RchiOBHm_Chr3g0488031

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000279
Physical Location & Seq
Reverse (-)
35563554 .. 35566596
3043 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45244

Sequence Viewer

Length: 543 bp
ATGAAGCTAGTCCTTCATGCCAAGAAACGGAACTGTTTTTATAATGCTGATGAAGACAGCAACTTGGCTCAGGCTATTACAGCTGCCCTGCTGGAGCTTGACCAACTTCATTCTCTGCTTAATATCGACTCTCTACTGTTCAAAAATGCTATATGGAAGGTTTGCTTCACTCATGACTTTTTGAACTCCATAACAAAAGTTAAAGACATTGTGATTCTTTGCGAAGTGCTTGCGTTATTAACCAAGCTTTTGAGTGGATGGCGCCAACCTCTTGAGGACAAAGGAACTTTAGTGTATGATGGGACTTCTGCTCAACTGTTAGAGAAGTATAAAATCAAAGGGAACTTGAATCCCATTTGGACTGTAGATATTCTCCAGGGGAATGTACATTACATCCAAATTATGAAGTTTTGGGATATTTTGCCATTTTGTCATATACCAAAACTAGCAAAGCGTCTTGACATTGTTTTTGGGAATTTTACAGTGGACAAAATGAACCACTGCCGTTACAAATGCATTGACAGGATACTATTGTTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

180

Amino Acids

20.85

Weight (kDa)

8.7

Isoelectric Point (pI)

28.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 261
AcsI RAATTY 1 cut(s) 475
AcyI GRCGYC 1 cut(s) 262
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 3 cut(s) 142, 184, 349
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 4 cut(s) 7, 83, 97, 247
AluI AGCT 4 cut(s) 7, 83, 97, 247
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 475
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AspLEI GCGC 1 cut(s) 264
BaeI ACNNNNGTAYC 1 cut(s) 518
BanI GGYRCC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 70
BccI CCATC 2 cut(s) 252, 293
BceAI ACGGC 1 cut(s) 489
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BciT130I CCWGG 1 cut(s) 377
BciVI GTATCC 1 cut(s) 519
BfaI CTAG 2 cut(s) 8, 446
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 265
BfuI GTATCC 1 cut(s) 519
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 377
BmiI GGNNCC 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 377
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 2 cut(s) 113, 359
Bpu10I CCTNAGC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 376
Bsc4I CCNNNNNNNGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 2 cut(s) 263, 393
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 261
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 316
Bsp1407I TGTACA 1 cut(s) 385
BspCNI CTCAG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 385
BssECI CCNNGG 1 cut(s) 376
BssNI GRCGYC 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 5 cut(s) 35, 138, 318, 364, 484
BstACI GRCGYC 1 cut(s) 262
BstAUI TGTACA 1 cut(s) 385
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 2 cut(s) 263, 393
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 1 cut(s) 264
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 60
BsuI GTATCC 1 cut(s) 519
BtsCI GGATG 2 cut(s) 263, 393
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 2 cut(s) 489, 499
Cac8I GCNNGC 1 cut(s) 231
CciI TCATGA 1 cut(s) 172
CfoI GCGC 1 cut(s) 264
CseI GACGC 1 cut(s) 443
Csp6I GTAC 1 cut(s) 386
CviAII CATG 2 cut(s) 17, 173
CviJI RGCY 6 cut(s) 7, 68, 74, 83, 97, 247
CviKI_1 RGCY 6 cut(s) 7, 68, 74, 83, 97, 247
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 1 cut(s) 69
DinI GGCGCC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 375
EcoT22I ATGCAT 1 cut(s) 518
EgeI GGCGCC 1 cut(s) 263
EheI GGCGCC 1 cut(s) 263
FaeI CATG 2 cut(s) 20, 176
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 316
FatI CATG 2 cut(s) 16, 172
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 2 cut(s) 270, 380
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 2 cut(s) 8, 446
GlaI GCGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 84
GsuI CTGGAG 2 cut(s) 113, 359
HaeII RGCGCY 1 cut(s) 265
HgaI GACGC 1 cut(s) 443
HhaI GCGC 1 cut(s) 264
Hin1I GRCGYC 1 cut(s) 262
Hin1II CATG 2 cut(s) 20, 176
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 3 cut(s) 128, 214, 349
Hpy166II GTNNAC 1 cut(s) 487
Hpy188III TCNNGA 3 cut(s) 173, 272, 458
Hpy8I GTNNAC 1 cut(s) 487
HpyAV CCTTC 2 cut(s) 23, 151
HpyCH4III ACNGT 5 cut(s) 35, 138, 318, 364, 484
HpyCH4V TGCA 1 cut(s) 516
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 262
Hsp92II CATG 2 cut(s) 20, 176
HspAI GCGC 1 cut(s) 262
KasI GGCGCC 1 cut(s) 261
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 6 cut(s) 56, 77, 101, 362, 389, 508
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 2 cut(s) 8, 446
MaeIII GTNAC 1 cut(s) 506
MboII GAAGA 1 cut(s) 65
MluCI AATT 2 cut(s) 399, 475
Mly113I GGCGCC 1 cut(s) 262
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 2 cut(s) 268, 279
Mph1103I ATGCAT 1 cut(s) 518
MseI TTAA 3 cut(s) 120, 201, 239
MspA1I CMGCKG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 80
NarI GGCGCC 1 cut(s) 262
NlaIII CATG 2 cut(s) 20, 176
NlaIV GGNNCC 1 cut(s) 263
NsiI ATGCAT 1 cut(s) 518
PagI TCATGA 1 cut(s) 172
PfeI GAWTC 2 cut(s) 214, 349
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 122
PluTI GGCGCC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 122
PsiI TTATAA 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
SaqAI TTAA 3 cut(s) 120, 201, 239
SatI GCNGC 1 cut(s) 84
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 377
SetI ASST 6 cut(s) 9, 85, 99, 162, 249, 271
SfcI CTRYAG 1 cut(s) 363
SfoI GGCGCC 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 2 cut(s) 399, 475
SspDI GGCGCC 1 cut(s) 261
SspMI CTAG 2 cut(s) 8, 446
StyD4I CCNGG 1 cut(s) 375
TaaI ACNGT 5 cut(s) 35, 138, 318, 364, 484
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 399, 475
TatI WGTACW 1 cut(s) 385
TfiI GAWTC 2 cut(s) 214, 349
Tru1I TTAA 3 cut(s) 120, 201, 239
Tru9I TTAA 3 cut(s) 120, 201, 239
TscAI CASTG 2 cut(s) 489, 506
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 6 cut(s) 5, 17, 66, 98, 419, 509
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 2 cut(s) 489, 506
XapI RAATTY 1 cut(s) 475
XspI CTAG 2 cut(s) 8, 446
Zsp2I ATGCAT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.