Rw5G020630

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000279
Physical Location & Seq
Forward (+)
27288583 .. 27289146
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G020630.1

Sequence Viewer

Length: 471 bp
ATGATCGGTGTTTACATTGACAGCATCTTAATAAATGTGGTAAATTACTTGATTGCAGTAAGTGCTGATTTTGGAAGAAGTTTGTTTGGAAGGCTGGCAAAGTTGGGACACAAGAAGCACCTACTCAATGTCCAGTACAGGATGCATCCATCCATCGGTTTATTTCCAAAAAGGGAGTTCTACGACAACCAGATAGTAGATGGTCCAAATGTCATAGAAAAAAGCTATGAGAGGTGCTTCCTCAAGGGGAAAATGTACCAATCCTATTCCTTCATAAATGTGGCCAATGGAAAAGAAGAATTTGATCACAGATTTAGTTGGAAAAATATGGTGGAGGTTGCTGTAGTCTCTGGGATAGTAGCAAGCCTTTATAAAGAATTCATTGGAACAAAGAAGAAAGTTAGTATTGGGGTCATATCACCATACAAGGCTCAAGTTTATGCAATTCAAGATACTCAGAAAATATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

156

Amino Acids

17.88

Weight (kDa)

9.5

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_12 PF13087 25 - 152 9.7e-29 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 2 cut(s) 299, 377
AfaI GTAC 2 cut(s) 137, 257
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 449
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 352
AoxI GGCC 1 cut(s) 282
ApoI RAATTY 2 cut(s) 299, 377
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 411
AvaII GGWCC 1 cut(s) 203
BalI TGGCCA 1 cut(s) 284
BccI CCATC 3 cut(s) 157, 161, 194
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 352
BfmI CTRYAG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmsI GCATC 3 cut(s) 33, 132, 154
BpuEI CTTGAG 2 cut(s) 227, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 133
BseGI GGATG 3 cut(s) 145, 147, 149
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 470
BseNI ACTGG 1 cut(s) 133
BshFI GGCC 1 cut(s) 284
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 120
BsnI GGCC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 3, 304
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 469
BsrI ACTGG 1 cut(s) 133
BssMI GATC 2 cut(s) 3, 304
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 96, 364
BstDEI CTNAG 1 cut(s) 456
BstF5I GGATG 3 cut(s) 145, 147, 149
BstKTI GATC 2 cut(s) 6, 307
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 2 cut(s) 3, 304
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 342
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 3 cut(s) 145, 147, 149
Cac8I GCNNGC 2 cut(s) 96, 364
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 136, 256
CviJI RGCY 5 cut(s) 94, 225, 284, 366, 431
CviKI_1 RGCY 5 cut(s) 94, 225, 284, 366, 431
CviQI GTAC 2 cut(s) 136, 256
DdeI CTNAG 1 cut(s) 456
DpnI GATC 2 cut(s) 5, 306
DpnII GATC 2 cut(s) 3, 304
EaeI YGGCCR 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 377
EcoT22I ATGCAT 1 cut(s) 147
FaiI YATR 9 cut(s) 215, 228, 275, 329, 372, 416, 424, 441, 466
FaqI GGGAC 1 cut(s) 120
FbaI TGATCA 1 cut(s) 304
FokI GGATG 3 cut(s) 132, 136, 154
HaeIII GGCC 1 cut(s) 284
HphI GGTGA 1 cut(s) 411
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 459
Hpy188III TCNNGA 1 cut(s) 449
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 84, 280
HpyCH4V TGCA 3 cut(s) 56, 145, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 456
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 3, 304
LpnPI CCDG 5 cut(s) 80, 124, 146, 203, 336
LweI GCATC 3 cut(s) 33, 132, 154
MalI GATC 2 cut(s) 5, 306
MboI GATC 2 cut(s) 3, 304
MboII GAAGA 3 cut(s) 87, 308, 406
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 4 cut(s) 43, 299, 377, 444
MluNI TGGCCA 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 3 cut(s) 225, 251, 328
Mox20I TGGCCA 1 cut(s) 284
Mph1103I ATGCAT 1 cut(s) 147
MscI TGGCCA 1 cut(s) 284
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 278
Msp20I TGGCCA 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 2 cut(s) 3, 304
NsiI ATGCAT 1 cut(s) 147
PsiI TTATAA 1 cut(s) 372
PspPI GGNCC 1 cut(s) 203
RsaI GTAC 2 cut(s) 137, 257
RsaNI GTAC 2 cut(s) 136, 256
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 2 cut(s) 3, 304
Sau96I GGNCC 1 cut(s) 203
SetI ASST 4 cut(s) 123, 227, 236, 339
SfaNI GCATC 3 cut(s) 33, 132, 154
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 2 cut(s) 242, 432
SmoI CTYRAG 2 cut(s) 242, 432
Sse9I AATT 4 cut(s) 43, 299, 377, 444
TasI AATT 4 cut(s) 43, 299, 377, 444
TatI WGTACW 1 cut(s) 135
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 262, 370
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 2 cut(s) 299, 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.