Rmu_co8075388.1_g000001

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8075388.1
OG0000279
Physical Location & Seq
Reverse (-)
2 .. 329
328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8075388.1_g000001.1.cds

Sequence Viewer

Length: 328 bp
atggaacttaatactgttgatggtttccaaggtcgggaggttgatatactaatactttccactgttagagcagcagaaccaagctctgctgcacctggaaacaattccagcagtattggatttgttgctgatgttagaaggatgaatgttgctctgacgagagccaaactctcactttggattttgggaaatgcaaggactttgcagacgaaccaaaactgggctgctcttgtaaaagatgctagaaagaggaatttggttataacaactaaaatgccttacaagtacacatttgaaacagctctccagaaaaattctggcaatcatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 SEN1_N

Protein Analysis

109

Amino Acids

12.03

Weight (kDa)

10.19

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 263
AcsI RAATTY 2 cut(s) 253, 313
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 2 cut(s) 34, 220
AgsI TTSAA 1 cut(s) 296
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 2 cut(s) 84, 302
AluI AGCT 2 cut(s) 84, 302
ApeKI GCWGC 3 cut(s) 71, 89, 224
ApoI RAATTY 2 cut(s) 253, 313
Asp700I GAANNNNTTC 1 cut(s) 103
BbvI GCAGC 3 cut(s) 76, 83, 211
BccI CCATC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 96
BfaI CTAG 1 cut(s) 243
BisI GCNGC 3 cut(s) 72, 90, 225
BlsI GCNGC 3 cut(s) 73, 91, 226
Bme1390I CCNGG 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 96
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 229
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpmI CTGGAG 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 220
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 34, 220
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 3 cut(s) 76, 83, 211
BsgI GTGCAG 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 34, 220
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 2 cut(s) 16, 64
BstF5I GGATG 1 cut(s) 147
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstV1I GCAGC 3 cut(s) 76, 83, 211
BtsCI GGATG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 60
Csp6I GTAC 1 cut(s) 286
CviJI RGCY 4 cut(s) 84, 164, 224, 302
CviKI_1 RGCY 4 cut(s) 84, 164, 224, 302
CviQI GTAC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaiI YATR 2 cut(s) 47, 263
Fnu4HI GCNGC 3 cut(s) 72, 90, 225
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 3 cut(s) 72, 90, 225
FspBI CTAG 1 cut(s) 243
GluI GCNGC 3 cut(s) 72, 90, 225
GsuI CTGGAG 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 35, 307
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 2 cut(s) 16, 64
HpyCH4V TGCA 3 cut(s) 92, 194, 205
LpnPI CCDG 6 cut(s) 81, 108, 121, 205, 303, 320
Lsp1109I GCAGC 3 cut(s) 76, 83, 211
LweI GCATC 1 cut(s) 229
MaeI CTAG 1 cut(s) 243
MluCI AATT 3 cut(s) 103, 253, 313
MnlI CCTC 2 cut(s) 31, 243
MroXI GAANNNNTTC 1 cut(s) 103
MseI TTAA 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 103
PkrI GCNGC 3 cut(s) 73, 91, 226
PsiI TTATAA 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 3 cut(s) 72, 90, 225
ScrFI CCNGG 1 cut(s) 96
SetI ASST 5 cut(s) 34, 42, 86, 97, 304
SfaNI GCATC 1 cut(s) 229
Sse9I AATT 3 cut(s) 103, 253, 313
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 16, 64
TasI AATT 3 cut(s) 103, 253, 313
TatI WGTACW 1 cut(s) 285
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 67
TseI GCWGC 3 cut(s) 71, 89, 224
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 1 cut(s) 67
XapI RAATTY 2 cut(s) 253, 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 103
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.