Rh2AG244800

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000279
Physical Location & Seq
Forward (+)
27077648 .. 27080573
2926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG244800.1

Sequence Viewer

Length: 684 bp
ATGAATTTCCATGGCGAGGCTGGTGCAGCATCAACCTACGCAATATCCCACATCCGAGGAGTTGAGGTCTGGAAGGATTACTACGCAAAGGTTTGCTTCACTCATGACTTTTTGAACTCCATAACTAAAGTTAAAGACATTGTGATTCTTTGCGAAGTGCTTGCGTTATTAACCAAGCTTTTGAGTGGATGGTGCCGACCTCTTGAGGACAAAGGAACTTTAGTGTATGATGGGACTTCTGCTCAACTGTTAGAGAAGTATAAAATCAAAGGGAACTTGAATCTCATTTGGACTGTAGATATTCTCCAGGAGAATGCACATTACATCCAAATTATGAAGTTTTGGGATATTTTGCCATTTTCTCATATACCAGAACTAGCAAAGCGTCTTGACATTGTTTTTGGGAATTTTACAGTGGACAAAATGAACCGCTGCCGTCACAACGTTGACAGGTGGTCTTTCTTTGATTTGACTGTAATTCATGATGGCCACAAAGATAGTACAGTAACAGTGCTACAAGCTGATTTTTATCGTGCCAATGAGTTGTTAGTACTGACAGATAAGCAAATAGTTGCCAAGGTGACATCTTACCAGTCAAAGTGCATCAAGGACTTCGAGAATGCTGCTGTGATATATAAGGACAAGTTTTATGTTTTCCGGCTTTATGTATTTATATGCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

227

Amino Acids

26.34

Weight (kDa)

7.63

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AciI CCGC 1 cut(s) 430
AclI AACGTT 1 cut(s) 444
AcoI YGGCCR 1 cut(s) 487
AcsI RAATTY 2 cut(s) 4, 406
AfaI GTAC 2 cut(s) 502, 552
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 2 cut(s) 115, 280
AhdI GACNNNNNGTC 1 cut(s) 454
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 2 cut(s) 178, 521
AluI AGCT 2 cut(s) 178, 521
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 3 cut(s) 26, 432, 623
ApoI RAATTY 2 cut(s) 4, 406
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AsuHPI GGTGA 1 cut(s) 592
BalI TGGCCA 1 cut(s) 489
BanI GGYRCC 1 cut(s) 192
BarI GAAGNNNNNNTAC 2 cut(s) 65, 97
BbvI GCAGC 3 cut(s) 38, 419, 610
BccI CCATC 3 cut(s) 183, 224, 479
BceAI ACGGC 1 cut(s) 420
BcgI CGANNNNNNTGC 6 cut(s) 5, 39, 143, 177, 605, 639
BciT130I CCWGG 1 cut(s) 308
BfaI CTAG 1 cut(s) 377
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 3 cut(s) 27, 433, 624
BlsI GCNGC 3 cut(s) 28, 434, 625
BmcAI AGTACT 1 cut(s) 552
Bme1390I CCNGG 1 cut(s) 308
BmeRI GACNNNNNGTC 1 cut(s) 454
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 2 cut(s) 38, 612
BpmI CTGGAG 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 528
BsaJI CCNNGG 3 cut(s) 10, 55, 576
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 592
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 3 cut(s) 10, 55, 576
BseGI GGATG 3 cut(s) 51, 194, 324
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 1 cut(s) 16
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 3 cut(s) 38, 419, 610
BsgI GTGCAG 1 cut(s) 45
BshFI GGCC 1 cut(s) 489
BshNI GGYRCC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 658
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 247
BsmI GAATGC 2 cut(s) 319, 625
BsnI GGCC 1 cut(s) 489
Bsp19I CCATGG 1 cut(s) 10
BspACI CCGC 1 cut(s) 430
BspANI GGCC 1 cut(s) 489
BspHI TCATGA 2 cut(s) 103, 481
BspLI GGNNCC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 592
BssECI CCNNGG 3 cut(s) 10, 55, 576
BssT1I CCWWGG 2 cut(s) 10, 576
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 6 cut(s) 249, 295, 415, 475, 505, 511
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 681
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 3 cut(s) 51, 194, 324
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 38, 419, 610
BsuRI GGCC 1 cut(s) 489
BtgI CCRYGG 1 cut(s) 10
BtsCI GGATG 3 cut(s) 51, 194, 324
BtsIMutI CAGTG 2 cut(s) 420, 516
Cac8I GCNNGC 1 cut(s) 162
CciI TCATGA 2 cut(s) 103, 481
CseI GACGC 1 cut(s) 374
Csp6I GTAC 2 cut(s) 501, 551
CviAII CATG 3 cut(s) 11, 104, 482
CviJI RGCY 5 cut(s) 20, 178, 489, 521, 661
CviKI_1 RGCY 5 cut(s) 20, 178, 489, 521, 661
CviQI GTAC 2 cut(s) 501, 551
DdeI CTNAG 1 cut(s) 681
DriI GACNNNNNGTC 1 cut(s) 454
EaeI YGGCCR 1 cut(s) 487
Eam1105I GACNNNNNGTC 1 cut(s) 454
Eco130I CCWWGG 2 cut(s) 10, 576
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 2 cut(s) 10, 576
ErhI CCWWGG 2 cut(s) 10, 576
FaeI CATG 3 cut(s) 14, 107, 485
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 247
FatI CATG 3 cut(s) 10, 103, 481
Fnu4HI GCNGC 3 cut(s) 27, 433, 624
FokI GGATG 3 cut(s) 38, 201, 311
Fsp4HI GCNGC 3 cut(s) 27, 433, 624
FspBI CTAG 1 cut(s) 377
GluI GCNGC 3 cut(s) 27, 433, 624
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 489
HapII CCGG 1 cut(s) 658
HgaI GACGC 1 cut(s) 374
Hin1II CATG 3 cut(s) 14, 107, 485
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 2 cut(s) 145, 280
HpaII CCGG 1 cut(s) 658
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 2 cut(s) 418, 448
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 6 cut(s) 70, 104, 203, 389, 482, 616
Hpy8I GTNNAC 2 cut(s) 418, 448
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 6 cut(s) 249, 295, 415, 475, 505, 511
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 4 cut(s) 26, 317, 603, 678
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 681
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 3 cut(s) 14, 107, 485
LpnPI CCDG 8 cut(s) 6, 55, 293, 320, 384, 436, 605, 671
Lsp1109I GCAGC 3 cut(s) 38, 419, 610
LweI GCATC 2 cut(s) 38, 612
MaeI CTAG 1 cut(s) 377
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 3 cut(s) 437, 505, 580
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 4 cut(s) 4, 330, 406, 477
MluNI TGGCCA 1 cut(s) 489
MnlI CCTC 5 cut(s) 10, 50, 58, 199, 210
Mox20I TGGCCA 1 cut(s) 489
MscI TGGCCA 1 cut(s) 489
MseI TTAA 2 cut(s) 132, 170
Msp20I TGGCCA 1 cut(s) 489
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 1 cut(s) 658
MspR9I CCNGG 1 cut(s) 308
Mva1269I GAATGC 2 cut(s) 319, 625
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 26
NcoI CCATGG 1 cut(s) 10
NlaIII CATG 3 cut(s) 14, 107, 485
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 2 cut(s) 437, 580
PagI TCATGA 2 cut(s) 103, 481
PctI GAATGC 2 cut(s) 319, 625
PfeI GAWTC 2 cut(s) 145, 280
PfoI TCCNGGA 1 cut(s) 306
PkrI GCNGC 3 cut(s) 28, 434, 625
Psp1406I AACGTT 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 194
RsaI GTAC 2 cut(s) 502, 552
RsaNI GTAC 2 cut(s) 501, 551
SaqAI TTAA 2 cut(s) 132, 170
SatI GCNGC 3 cut(s) 27, 433, 624
ScaI AGTACT 1 cut(s) 552
ScrFI CCNGG 1 cut(s) 308
SetI ASST 9 cut(s) 38, 69, 93, 180, 202, 447, 455, 523, 582
SfaNI GCATC 2 cut(s) 38, 612
SfcI CTRYAG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 4 cut(s) 4, 330, 406, 477
SsiI CCGC 1 cut(s) 430
SspMI CTAG 1 cut(s) 377
StyD4I CCNGG 1 cut(s) 306
StyI CCWWGG 2 cut(s) 10, 576
TaaI ACNGT 6 cut(s) 249, 295, 415, 475, 505, 511
TaiI ACGT 1 cut(s) 447
TaqI TCGA 1 cut(s) 615
TasI AATT 4 cut(s) 4, 330, 406, 477
TatI WGTACW 2 cut(s) 500, 550
TfiI GAWTC 2 cut(s) 145, 280
Tru1I TTAA 2 cut(s) 132, 170
Tru9I TTAA 2 cut(s) 132, 170
TscAI CASTG 2 cut(s) 420, 516
TseFI GTSAC 2 cut(s) 437, 580
TseI GCWGC 3 cut(s) 26, 432, 623
Tsp45I GTSAC 2 cut(s) 437, 580
TspDTI ATGAA 4 cut(s) 17, 350, 440, 470
TspRI CASTG 2 cut(s) 420, 516
XapI RAATTY 2 cut(s) 4, 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XspI CTAG 1 cut(s) 377
ZrmI AGTACT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.