AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 823 |
| AccI | GTMKAC | 2 cut(s) | 112, 2180 |
| AccII | CGCG | 1 cut(s) | 1524 |
| AciI | CCGC | 4 cut(s) | 796, 823, 1186, 1306 |
| AclWI | GGATC | 3 cut(s) | 284, 611, 2069 |
| AcoI | YGGCCR | 1 cut(s) | 2042 |
| AcsI | RAATTY | 3 cut(s) | 593, 1178, 1670 |
| AcuI | CTGAAG | 5 cut(s) | 368, 422, 596, 1645, 1853 |
| AcvI | CACGTG | 1 cut(s) | 1430 |
| AfaI | GTAC | 5 cut(s) | 137, 256, 371, 670, 1058 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 21, 77, 838, 1408 |
| AflIII | ACRYGT | 1 cut(s) | 1427 |
| AgsI | TTSAA | 9 cut(s) | 333, 493, 514, 627, 1250, 1622, 1636, 1746, 2094 |
| AjnI | CCWGG | 1 cut(s) | 1890 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1770, 1802 |
| Alw21I | GWGCWC | 4 cut(s) | 184, 238, 1435, 2024 |
| Alw26I | GTCTC | 4 cut(s) | 706, 1153, 1513, 2249 |
| Alw44I | GTGCAC | 2 cut(s) | 1431, 2020 |
| AlwI | GGATC | 3 cut(s) | 284, 611, 2069 |
| AoxI | GGCC | 2 cut(s) | 68, 2042 |
| ApaLI | GTGCAC | 2 cut(s) | 1431, 2020 |
| ApeKI | GCWGC | 4 cut(s) | 743, 1574, 1577, 1837 |
| ApoI | RAATTY | 3 cut(s) | 593, 1178, 1670 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1946, 1978 |
| AspS9I | GGNCC | 2 cut(s) | 69, 1004 |
| AsuHPI | GGTGA | 3 cut(s) | 1212, 1343, 2235 |
| AsuII | TTCGAA | 2 cut(s) | 888, 2213 |
| AvaII | GGWCC | 1 cut(s) | 1004 |
| BaeGI | GKGCMC | 2 cut(s) | 1435, 2024 |
| BbrPI | CACGTG | 1 cut(s) | 1430 |
| Bbv12I | GWGCWC | 4 cut(s) | 184, 238, 1435, 2024 |
| BbvI | GCAGC | 4 cut(s) | 730, 1561, 1564, 1824 |
| BccI | CCATC | 9 cut(s) | 75, 958, 962, 995, 1310, 1641, 1746, 1777, 2034 |
| BciT130I | CCWGG | 1 cut(s) | 1892 |
| BciVI | GTATCC | 1 cut(s) | 803 |
| BclI | TGATCA | 2 cut(s) | 54, 1105 |
| BcoDI | GTCTC | 4 cut(s) | 706, 1153, 1513, 2249 |
| BfaI | CTAG | 4 cut(s) | 1502, 1935, 1940, 2055 |
| BfuI | GTATCC | 1 cut(s) | 803 |
| BisI | GCNGC | 5 cut(s) | 744, 824, 1575, 1578, 1838 |
| BlpI | GCTNAGC | 1 cut(s) | 747 |
| BlsI | GCNGC | 5 cut(s) | 745, 825, 1576, 1579, 1839 |
| BmcAI | AGTACT | 1 cut(s) | 137 |
| Bme1390I | CCNGG | 1 cut(s) | 1892 |
| Bme18I | GGWCC | 1 cut(s) | 1004 |
| BmgT120I | GGNCC | 2 cut(s) | 69, 1004 |
| BmiI | GGNNCC | 2 cut(s) | 123, 1322 |
| BmrFI | CCNGG | 1 cut(s) | 1892 |
| BmsI | GCATC | 7 cut(s) | 472, 683, 928, 933, 955, 1472, 1501 |
| BpmI | CTGGAG | 1 cut(s) | 1607 |
| Bpu10I | CCTNAGC | 1 cut(s) | 480 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 747 |
| Bpu14I | TTCGAA | 2 cut(s) | 888, 2213 |
| BpuEI | CTTGAG | 7 cut(s) | 40, 137, 168, 222, 425, 1028, 1218 |
| Bsa29I | ATCGAT | 1 cut(s) | 36 |
| BsaAI | YACGTR | 1 cut(s) | 1430 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1349 |
| BsaI | GGTCTC | 2 cut(s) | 706, 1153 |
| BsaJI | CCNNGG | 1 cut(s) | 1324 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 21, 77, 838, 1408 |
| Bse118I | RCCGGY | 1 cut(s) | 2044 |
| Bse1I | ACTGG | 2 cut(s) | 723, 2263 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1349 |
| BseBI | CCWGG | 1 cut(s) | 1892 |
| BseCI | ATCGAT | 1 cut(s) | 36 |
| BseDI | CCNNGG | 1 cut(s) | 1324 |
| BseJI | GATNNNNATC | 1 cut(s) | 1349 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 21, 77, 838, 1408 |
| BseMII | CTCAG | 5 cut(s) | 602, 761, 858, 1143, 2125 |
| BseNI | ACTGG | 2 cut(s) | 723, 2263 |
| BseRI | GAGGAG | 1 cut(s) | 320 |
| BseSI | GKGCMC | 2 cut(s) | 1435, 2024 |
| BseXI | GCAGC | 4 cut(s) | 730, 1561, 1564, 1824 |
| Bsh1236I | CGCG | 1 cut(s) | 1524 |
| Bsh1285I | CGRYCG | 3 cut(s) | 36, 40, 538 |
| BshFI | GGCC | 2 cut(s) | 70, 2044 |
| BshVI | ATCGAT | 1 cut(s) | 36 |
| BsiEI | CGRYCG | 3 cut(s) | 36, 40, 538 |
| BsiHKAI | GWGCWC | 4 cut(s) | 184, 238, 1435, 2024 |
| BsiSI | CCGG | 1 cut(s) | 2045 |
| BslFI | GGGAC | 4 cut(s) | 587, 921, 1810, 1981 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 21, 77, 838, 1408 |
| BsmAI | GTCTC | 4 cut(s) | 706, 1153, 1513, 2249 |
| BsmBI | CGTCTC | 1 cut(s) | 1513 |
| BsmFI | GGGAC | 4 cut(s) | 587, 921, 1810, 1981 |
| BsmI | GAATGC | 2 cut(s) | 393, 1465 |
| BsnI | GGCC | 2 cut(s) | 70, 2044 |
| Bso31I | GGTCTC | 2 cut(s) | 706, 1153 |
| Bsp119I | TTCGAA | 2 cut(s) | 888, 2213 |
| Bsp1286I | GDGCHC | 4 cut(s) | 184, 238, 1435, 2024 |
| Bsp1407I | TGTACA | 1 cut(s) | 369 |
| Bsp143I | GATC | 8 cut(s) | 33, 37, 54, 289, 616, 1105, 2074, 2277 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 747 |
| BspACI | CCGC | 4 cut(s) | 796, 823, 1186, 1306 |
| BspANI | GGCC | 2 cut(s) | 70, 2044 |
| BspCNI | CTCAG | 5 cut(s) | 601, 760, 859, 1144, 2124 |
| BspDI | ATCGAT | 1 cut(s) | 36 |
| BspFNI | CGCG | 1 cut(s) | 1524 |
| BspHI | TCATGA | 1 cut(s) | 1789 |
| BspLI | GGNNCC | 2 cut(s) | 123, 1322 |
| BspPI | GGATC | 3 cut(s) | 284, 611, 2069 |
| BspT104I | TTCGAA | 2 cut(s) | 888, 2213 |
| BspTNI | GGTCTC | 2 cut(s) | 706, 1153 |
| BsrBI | CCGCTC | 1 cut(s) | 823 |
| BsrFI | RCCGGY | 1 cut(s) | 2044 |
| BsrGI | TGTACA | 1 cut(s) | 369 |
| BsrI | ACTGG | 2 cut(s) | 723, 2263 |
| BssAI | RCCGGY | 1 cut(s) | 2044 |
| BssECI | CCNNGG | 1 cut(s) | 1324 |
| BssMI | GATC | 8 cut(s) | 33, 37, 54, 289, 616, 1105, 2074, 2277 |
| BssT1I | CCWWGG | 1 cut(s) | 1324 |
| Bst2UI | CCWGG | 1 cut(s) | 1892 |
| Bst6I | CTCTTC | 2 cut(s) | 126, 1329 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1418 |
| BstAUI | TGTACA | 1 cut(s) | 369 |
| BstBAI | YACGTR | 1 cut(s) | 1430 |
| BstBI | TTCGAA | 2 cut(s) | 888, 2213 |
| BstC8I | GCNNGC | 3 cut(s) | 644, 655, 2000 |
| BstDEI | CTNAG | 8 cut(s) | 480, 496, 588, 747, 867, 1152, 1613, 2111 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 19 |
| BstFNI | CGCG | 1 cut(s) | 1524 |
| BstKTI | GATC | 8 cut(s) | 36, 40, 57, 292, 619, 1108, 2077, 2280 |
| BstMAI | GTCTC | 4 cut(s) | 706, 1153, 1513, 2249 |
| BstMBI | GATC | 8 cut(s) | 33, 37, 54, 289, 616, 1105, 2074, 2277 |
| BstMCI | CGRYCG | 3 cut(s) | 36, 40, 538 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 863, 1418, 1574 |
| BstNI | CCWGG | 1 cut(s) | 1892 |
| BstSCI | CCNGG | 1 cut(s) | 1890 |
| BstSLI | GKGCMC | 2 cut(s) | 1435, 2024 |
| BstUI | CGCG | 1 cut(s) | 1524 |
| BstV1I | GCAGC | 4 cut(s) | 730, 1561, 1564, 1824 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2040 |
| Bsu15I | ATCGAT | 1 cut(s) | 36 |
| BsuI | GTATCC | 1 cut(s) | 803 |
| BsuRI | GGCC | 2 cut(s) | 70, 2044 |
| BsuTUI | ATCGAT | 1 cut(s) | 36 |
| BtsI | GCAGTG | 1 cut(s) | 2022 |
| Cac8I | GCNNGC | 3 cut(s) | 644, 655, 2000 |
| CciI | TCATGA | 1 cut(s) | 1789 |
| Cfr10I | RCCGGY | 1 cut(s) | 2044 |
| Cfr13I | GGNCC | 2 cut(s) | 69, 1004 |
| ClaI | ATCGAT | 1 cut(s) | 36 |
| CseI | GACGC | 2 cut(s) | 1530, 1937 |
| Csp6I | GTAC | 5 cut(s) | 136, 255, 370, 669, 1057 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 705, 740 |
| CviAII | CATG | 9 cut(s) | 358, 418, 460, 800, 1109, 1604, 1790, 2066, 2222 |
| CviQI | GTAC | 5 cut(s) | 136, 255, 370, 669, 1057 |
| DdeI | CTNAG | 8 cut(s) | 480, 496, 588, 747, 867, 1152, 1613, 2111 |
| DpnI | GATC | 8 cut(s) | 35, 39, 56, 291, 618, 1107, 2076, 2279 |
| DpnII | GATC | 8 cut(s) | 33, 37, 54, 289, 616, 1105, 2074, 2277 |
| DraI | TTTAAA | 1 cut(s) | 451 |
| EaeI | YGGCCR | 1 cut(s) | 2042 |
| Eam1104I | CTCTTC | 2 cut(s) | 126, 1329 |
| EarI | CTCTTC | 2 cut(s) | 126, 1329 |
| EciI | GGCGGA | 1 cut(s) | 785 |
| Eco130I | CCWWGG | 1 cut(s) | 1324 |
| Eco31I | GGTCTC | 2 cut(s) | 706, 1153 |
| Eco32I | GATATC | 1 cut(s) | 1912 |
| Eco47I | GGWCC | 1 cut(s) | 1004 |
| Eco57I | CTGAAG | 5 cut(s) | 368, 422, 596, 1645, 1853 |
| Eco72I | CACGTG | 1 cut(s) | 1430 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 19 |
| EcoO109I | RGGNCCY | 1 cut(s) | 69 |
| EcoRI | GAATTC | 1 cut(s) | 1178 |
| EcoRII | CCWGG | 1 cut(s) | 1890 |
| EcoRV | GATATC | 1 cut(s) | 1912 |
| EcoT14I | CCWWGG | 1 cut(s) | 1324 |
| EcoT22I | ATGCAT | 4 cut(s) | 465, 703, 948, 1465 |
| ErhI | CCWWGG | 1 cut(s) | 1324 |
| Esp3I | CGTCTC | 1 cut(s) | 1513 |
| FaeI | CATG | 9 cut(s) | 361, 421, 463, 803, 1112, 1607, 1793, 2069, 2225 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 31, 1643, 1675 |
| FaqI | GGGAC | 4 cut(s) | 587, 921, 1810, 1981 |
| FatI | CATG | 9 cut(s) | 357, 417, 459, 799, 1108, 1603, 1789, 2065, 2221 |
| FbaI | TGATCA | 2 cut(s) | 54, 1105 |
| FblI | GTMKAC | 2 cut(s) | 112, 2180 |
| Fnu4HI | GCNGC | 5 cut(s) | 744, 824, 1575, 1578, 1838 |
| Fsp4HI | GCNGC | 5 cut(s) | 744, 824, 1575, 1578, 1838 |
| FspBI | CTAG | 4 cut(s) | 1502, 1935, 1940, 2055 |
| GluI | GCNGC | 5 cut(s) | 744, 824, 1575, 1578, 1838 |
| GsuI | CTGGAG | 1 cut(s) | 1607 |
| HaeIII | GGCC | 2 cut(s) | 70, 2044 |
| HapII | CCGG | 1 cut(s) | 2045 |
| HgaI | GACGC | 2 cut(s) | 1530, 1937 |
| Hin1II | CATG | 9 cut(s) | 361, 421, 463, 803, 1112, 1607, 1793, 2069, 2225 |
| HincII | GTYRAC | 1 cut(s) | 1477 |
| HindII | GTYRAC | 1 cut(s) | 1477 |
| HindIII | AAGCTT | 3 cut(s) | 426, 880, 1739 |
| HpaI | GTTAAC | 1 cut(s) | 1477 |
| HpaII | CCGG | 1 cut(s) | 2045 |
| HphI | GGTGA | 3 cut(s) | 1212, 1343, 2235 |
| Hpy166II | GTNNAC | 7 cut(s) | 113, 372, 572, 1433, 1477, 2022, 2181 |
| Hpy188I | TCNGA | 9 cut(s) | 591, 993, 1008, 1032, 1122, 1153, 1364, 1927, 2324 |
| Hpy8I | GTNNAC | 7 cut(s) | 113, 372, 572, 1433, 1477, 2022, 2181 |
| Hpy99I | CGWCG | 1 cut(s) | 1716 |
| HpyCH4IV | ACGT | 5 cut(s) | 109, 299, 1371, 1429, 2250 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 863, 1418, 1574 |
| HpyF3I | CTNAG | 8 cut(s) | 480, 496, 588, 747, 867, 1152, 1613, 2111 |
| HpySE526I | ACGT | 5 cut(s) | 109, 299, 1371, 1429, 2250 |
| Hsp92II | CATG | 9 cut(s) | 361, 421, 463, 803, 1112, 1607, 1793, 2069, 2225 |
| Ksp22I | TGATCA | 2 cut(s) | 54, 1105 |
| KspAI | GTTAAC | 1 cut(s) | 1477 |
| Kzo9I | GATC | 8 cut(s) | 33, 37, 54, 289, 616, 1105, 2074, 2277 |
| LmnI | GCTCC | 1 cut(s) | 1588 |
| Lsp1109I | GCAGC | 4 cut(s) | 730, 1561, 1564, 1824 |
| LweI | GCATC | 7 cut(s) | 472, 683, 928, 933, 955, 1472, 1501 |
| MaeI | CTAG | 4 cut(s) | 1502, 1935, 1940, 2055 |
| MaeII | ACGT | 5 cut(s) | 109, 299, 1371, 1429, 2250 |
| MaeIII | GTNAC | 6 cut(s) | 1012, 1280, 1367, 1481, 1757, 1915 |
| MalI | GATC | 8 cut(s) | 35, 39, 56, 291, 618, 1107, 2076, 2279 |
| MbiI | CCGCTC | 1 cut(s) | 823 |
| MboI | GATC | 8 cut(s) | 33, 37, 54, 289, 616, 1105, 2074, 2277 |
| MfeI | CAATTG | 1 cut(s) | 1383 |
| MhlI | GDGCHC | 4 cut(s) | 184, 238, 1435, 2024 |
| MlyI | GAGTC | 3 cut(s) | 773, 1221, 1478 |
| MmeI | TCCRAC | 1 cut(s) | 1422 |
| Mph1103I | ATGCAT | 4 cut(s) | 465, 703, 948, 1465 |
| MspI | CCGG | 1 cut(s) | 2045 |
| MspR9I | CCNGG | 1 cut(s) | 1892 |
| MunI | CAATTG | 1 cut(s) | 1383 |
| Mva1269I | GAATGC | 2 cut(s) | 393, 1465 |
| MvaI | CCWGG | 1 cut(s) | 1892 |
| MvnI | CGCG | 1 cut(s) | 1524 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 863, 1418, 1574 |
| NdeII | GATC | 8 cut(s) | 33, 37, 54, 289, 616, 1105, 2074, 2277 |
| NlaIII | CATG | 9 cut(s) | 361, 421, 463, 803, 1112, 1607, 1793, 2069, 2225 |
| NlaIV | GGNNCC | 2 cut(s) | 123, 1322 |
| NmuCI | GTSAC | 4 cut(s) | 1012, 1481, 1757, 1915 |
| NsiI | ATGCAT | 4 cut(s) | 465, 703, 948, 1465 |
| NspV | TTCGAA | 2 cut(s) | 888, 2213 |
| PagI | TCATGA | 1 cut(s) | 1789 |
| PctI | GAATGC | 2 cut(s) | 393, 1465 |
| PfeI | GAWTC | 7 cut(s) | 329, 1622, 1843, 1990, 2051, 2132, 2262 |
| PkrI | GCNGC | 5 cut(s) | 745, 825, 1576, 1579, 1839 |
| Ple19I | CGATCG | 2 cut(s) | 36, 40 |
| PleI | GAGTC | 3 cut(s) | 772, 1220, 1478 |
| PmaCI | CACGTG | 1 cut(s) | 1430 |
| PmlI | CACGTG | 1 cut(s) | 1430 |
| PpsI | GAGTC | 3 cut(s) | 772, 1220, 1478 |
| Ppu21I | YACGTR | 1 cut(s) | 1430 |
| Psp6I | CCWGG | 1 cut(s) | 1890 |
| PspCI | CACGTG | 1 cut(s) | 1430 |
| PspGI | CCWGG | 1 cut(s) | 1890 |
| PspN4I | GGNNCC | 2 cut(s) | 123, 1322 |
| PspPI | GGNCC | 2 cut(s) | 69, 1004 |
| PvuI | CGATCG | 2 cut(s) | 36, 40 |
| RsaI | GTAC | 5 cut(s) | 137, 256, 371, 670, 1058 |
| RsaNI | GTAC | 5 cut(s) | 136, 255, 370, 669, 1057 |
| SatI | GCNGC | 5 cut(s) | 744, 824, 1575, 1578, 1838 |
| Sau3AI | GATC | 8 cut(s) | 33, 37, 54, 289, 616, 1105, 2074, 2277 |
| Sau96I | GGNCC | 2 cut(s) | 69, 1004 |
| ScaI | AGTACT | 1 cut(s) | 137 |
| SchI | GAGTC | 3 cut(s) | 773, 1221, 1478 |
| ScrFI | CCNGG | 1 cut(s) | 1892 |
| SduI | GDGCHC | 4 cut(s) | 184, 238, 1435, 2024 |
| SfaNI | GCATC | 7 cut(s) | 472, 683, 928, 933, 955, 1472, 1501 |
| SfuI | TTCGAA | 2 cut(s) | 888, 2213 |
| SinI | GGWCC | 1 cut(s) | 1004 |
| SmlI | CTYRAG | 8 cut(s) | 19, 116, 183, 237, 440, 1043, 1233, 2315 |
| SmoI | CTYRAG | 8 cut(s) | 19, 116, 183, 237, 440, 1043, 1233, 2315 |
| SsiI | CCGC | 4 cut(s) | 796, 823, 1186, 1306 |
| SspI | AATATT | 1 cut(s) | 663 |
| SspMI | CTAG | 4 cut(s) | 1502, 1935, 1940, 2055 |
| StyD4I | CCNGG | 1 cut(s) | 1890 |
| StyI | CCWWGG | 1 cut(s) | 1324 |
| TaiI | ACGT | 5 cut(s) | 112, 302, 1374, 1432, 2253 |
| TaqI | TCGA | 7 cut(s) | 32, 36, 888, 1134, 1466, 1714, 2213 |
| TaqII | GACCGA | 1 cut(s) | 524 |
| TatI | WGTACW | 3 cut(s) | 135, 369, 668 |
| TauI | GCSGC | 1 cut(s) | 826 |
| TfiI | GAWTC | 7 cut(s) | 329, 1622, 1843, 1990, 2051, 2132, 2262 |
| TseFI | GTSAC | 4 cut(s) | 1012, 1481, 1757, 1915 |
| TseI | GCWGC | 4 cut(s) | 743, 1574, 1577, 1837 |
| Tsp45I | GTSAC | 4 cut(s) | 1012, 1481, 1757, 1915 |
| VneI | GTGCAC | 2 cut(s) | 1431, 2020 |
| VpaK11BI | GGWCC | 1 cut(s) | 1004 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 19 |
| XapI | RAATTY | 3 cut(s) | 593, 1178, 1670 |
| XmiI | GTMKAC | 2 cut(s) | 112, 2180 |
| XspI | CTAG | 4 cut(s) | 1502, 1935, 1940, 2055 |
| ZrmI | AGTACT | 1 cut(s) | 137 |
| Zsp2I | ATGCAT | 4 cut(s) | 465, 703, 948, 1465 |