Rh6AG133800

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000279
Physical Location & Seq
Forward (+)
20284193 .. 20287119
2927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG133800.1

Sequence Viewer

Length: 903 bp
ATGGACAAGGAGAGTGATGTTCTCAATAAAGATCATTACAAAACCCAGGTAACTAAGATTCCTGAGACGTTCTCGACCGTAACGAGTTACATGAAAGCATTTGTTCCTTCACTTCTTGAGGAAATACATGATGAATTACGCTCAAGCATGATGTCCCTGGCGCAGGCGCGAACTTGTGAAATTCTGACAGTTGAAACTTCCAAGGATCATAAACCTCCCAAAGACTTGTTTTACCAAATTACATGTGCAGAAGATTACGTAGGAGCATACGAGCCAGTTGTTGGTGATATCATTGCCTTGACAGATGTGAGACCAAAATCCATTGATGATTTGAATAGATCCAGAAATTCTTATCTTATTACTTATGTTATTGGATCGCAACACGGAAGTTCTGATAAGCTTCCGATACTCGCATCAAAGTCTATCAATAAAGGAGAGTCAGGAAACAAAAAGATTAATAATTCTGGTGATAGGAGTTCAGCAAGTGATGGTGAAAATGATAATTTGACGTTTGAGCAGTATGTGAATGATAGACAGGACTCAATGTATTTGAAAAAGAGAAGGGAAAAATACAATGATGATGGTAAAGACAGTGATAATAGGAACTCATCAAGTGATGATCTCATTGGTTTTTTGACACTTGAGGAGTTTGTGAAGGAGAAACAGTATTCACTGTATTTGAAAAAGGGAAAGGAAAGATGCGACATTGACGGTGAAGATAGTGATAACACAAACTCATCAAGTGATGATGTAATTAATGTTTTGACGTTTGAGGAGTTTATGAAGGAGAAACAGAATGACATTGGTGAGAATCTGAAGCTGTGTATGGGGGTTGGCATTGCTAGTGAAGGGTTTCAATTGGTCCTGAACAATTGTGTTCATATACTGAGTCTTAGCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

300

Amino Acids

33.8

Weight (kDa)

4.82

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 281
AccII CGCG 1 cut(s) 169
AclWI GGATC 3 cut(s) 213, 333, 382
AcsI RAATTY 2 cut(s) 180, 346
AcuI CTGAAG 1 cut(s) 836
AfiI CCNNNNNNNGG 2 cut(s) 163, 281
AflIII ACRYGT 1 cut(s) 242
AgsI TTSAA 5 cut(s) 194, 334, 553, 682, 857
AjnI CCWGG 2 cut(s) 45, 156
AluBI AGCT 2 cut(s) 400, 820
AluI AGCT 2 cut(s) 400, 820
Alw26I GTCTC 2 cut(s) 59, 304
AlwI GGATC 3 cut(s) 213, 333, 382
ApoI RAATTY 2 cut(s) 180, 346
AseI ATTAAT 2 cut(s) 456, 756
Asp700I GAANNNNTTC 1 cut(s) 852
AspLEI GCGC 2 cut(s) 163, 169
AspS9I GGNCC 1 cut(s) 862
AsuHPI GGTGA 5 cut(s) 296, 479, 503, 725, 818
AvaII GGWCC 1 cut(s) 862
BccI CCATC 2 cut(s) 482, 575
BciT130I CCWGG 2 cut(s) 47, 158
BcoDI GTCTC 2 cut(s) 59, 304
BfaI CTAG 1 cut(s) 843
Bme1390I CCNGG 2 cut(s) 47, 158
Bme18I GGWCC 1 cut(s) 862
BmgT120I GGNCC 1 cut(s) 862
BmrFI CCNGG 2 cut(s) 47, 158
BmsI GCATC 2 cut(s) 422, 689
BplI GAGNNNNNCTC 2 cut(s) 56, 88
BpuEI CTTGAG 3 cut(s) 127, 137, 662
BsaAI YACGTR 1 cut(s) 259
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 3 cut(s) 45, 156, 201
BsaXI ACNNNNNCTCC 2 cut(s) 650, 680
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 281
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 2 cut(s) 291, 837
BseBI CCWGG 2 cut(s) 47, 158
BseDI CCNNGG 3 cut(s) 45, 156, 201
BseLI CCNNNNNNNGG 2 cut(s) 163, 281
BseMI GCAATG 2 cut(s) 291, 837
BseMII CTCAG 2 cut(s) 54, 878
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 2 cut(s) 659, 788
BsgI GTGCAG 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 163, 281
BsmAI GTCTC 2 cut(s) 59, 304
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 139
Bso31I GGTCTC 1 cut(s) 304
Bsp143I GATC 5 cut(s) 31, 205, 338, 374, 619
BspCNI CTCAG 2 cut(s) 55, 879
BspFNI CGCG 1 cut(s) 169
BspPI GGATC 3 cut(s) 213, 333, 382
BspTNI GGTCTC 1 cut(s) 304
BsrDI GCAATG 2 cut(s) 291, 837
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 3 cut(s) 45, 156, 201
BssMI GATC 5 cut(s) 31, 205, 338, 374, 619
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 2 cut(s) 47, 158
Bst4CI ACNGT 6 cut(s) 79, 190, 593, 666, 675, 713
BstBAI YACGTR 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 4 cut(s) 54, 63, 887, 893
BstENI CCTNNNNNAGG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 169
BstHHI GCGC 2 cut(s) 163, 169
BstKTI GATC 5 cut(s) 34, 208, 341, 377, 622
BstMAI GTCTC 2 cut(s) 59, 304
BstMBI GATC 5 cut(s) 31, 205, 338, 374, 619
BstMCI CGRYCG 1 cut(s) 78
BstNI CCWGG 2 cut(s) 47, 158
BstNSI RCATGY 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 45, 156
BstSNI TACGTA 1 cut(s) 259
BstUI CGCG 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BtsIMutI CAGTG 2 cut(s) 598, 671
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 2 cut(s) 163, 169
Cfr13I GGNCC 1 cut(s) 862
CseI GACGC 1 cut(s) 886
CviAII CATG 4 cut(s) 91, 128, 148, 243
CviJI RGCY 3 cut(s) 274, 400, 820
CviKI_1 RGCY 3 cut(s) 274, 400, 820
DdeI CTNAG 4 cut(s) 54, 63, 887, 893
DpnI GATC 5 cut(s) 33, 207, 340, 376, 621
DpnII GATC 5 cut(s) 31, 205, 338, 374, 619
Eco105I TACGTA 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 304
Eco32I GATATC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 862
Eco57I CTGAAG 1 cut(s) 836
EcoNI CCTNNNNNAGG 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 45, 156
EcoRV GATATC 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 4 cut(s) 94, 131, 151, 246
FaqI GGGAC 1 cut(s) 139
FatI CATG 4 cut(s) 90, 127, 147, 242
FspBI CTAG 1 cut(s) 843
GlaI GCGC 2 cut(s) 162, 168
HgaI GACGC 1 cut(s) 886
HhaI GCGC 2 cut(s) 163, 169
Hin1II CATG 4 cut(s) 94, 131, 151, 246
Hin6I GCGC 2 cut(s) 161, 167
HinP1I GCGC 2 cut(s) 161, 167
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 5 cut(s) 58, 437, 539, 811, 889
HphI GGTGA 5 cut(s) 296, 479, 503, 725, 818
Hpy188I TCNGA 5 cut(s) 186, 394, 405, 816, 902
Hpy188III TCNNGA 6 cut(s) 62, 73, 116, 342, 441, 865
HpyAV CCTTC 5 cut(s) 117, 555, 649, 778, 842
HpyCH4III ACNGT 6 cut(s) 79, 190, 593, 666, 675, 713
HpyCH4IV ACGT 4 cut(s) 68, 258, 509, 767
HpyCH4V TGCA 1 cut(s) 248
HpyF3I CTNAG 4 cut(s) 54, 63, 887, 893
HpySE526I ACGT 4 cut(s) 68, 258, 509, 767
Hsp92II CATG 4 cut(s) 94, 131, 151, 246
HspAI GCGC 2 cut(s) 161, 167
Kzo9I GATC 5 cut(s) 31, 205, 338, 374, 619
LmnI GCTCC 1 cut(s) 263
LweI GCATC 2 cut(s) 422, 689
MaeI CTAG 1 cut(s) 843
MaeII ACGT 4 cut(s) 68, 258, 509, 767
MaeIII GTNAC 3 cut(s) 49, 79, 86
MalI GATC 5 cut(s) 33, 207, 340, 376, 621
MboI GATC 5 cut(s) 31, 205, 338, 374, 619
MboII GAAGA 2 cut(s) 263, 728
MfeI CAATTG 2 cut(s) 857, 871
MflI RGATCY 1 cut(s) 338
MluCI AATT 9 cut(s) 134, 180, 237, 346, 460, 502, 753, 857, 871
MlyI GAGTC 3 cut(s) 446, 533, 898
MnlI CCTC 4 cut(s) 112, 225, 637, 766
MroXI GAANNNNTTC 1 cut(s) 852
MseI TTAA 2 cut(s) 456, 756
MspR9I CCNGG 2 cut(s) 47, 158
MunI CAATTG 2 cut(s) 857, 871
MvaI CCWGG 2 cut(s) 47, 158
MvnI CGCG 1 cut(s) 169
NdeII GATC 5 cut(s) 31, 205, 338, 374, 619
NlaIII CATG 4 cut(s) 94, 131, 151, 246
NspI RCATGY 1 cut(s) 246
PciI ACATGT 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 852
PfeI GAWTC 2 cut(s) 58, 811
PflMI CCANNNNNTGG 1 cut(s) 281
PleI GAGTC 3 cut(s) 445, 533, 897
PpsI GAGTC 3 cut(s) 445, 533, 897
Ppu21I YACGTR 1 cut(s) 259
PscI ACATGT 1 cut(s) 242
PshBI ATTAAT 2 cut(s) 456, 756
Psp6I CCWGG 2 cut(s) 45, 156
PspGI CCWGG 2 cut(s) 45, 156
PspPI GGNCC 1 cut(s) 862
PsuI RGATCY 1 cut(s) 338
SaqAI TTAA 2 cut(s) 456, 756
Sau3AI GATC 5 cut(s) 31, 205, 338, 374, 619
Sau96I GGNCC 1 cut(s) 862
SchI GAGTC 3 cut(s) 446, 533, 898
ScrFI CCNGG 2 cut(s) 47, 158
SetI ASST 8 cut(s) 51, 71, 217, 261, 402, 512, 770, 822
SfaNI GCATC 2 cut(s) 422, 689
SinI GGWCC 1 cut(s) 862
SmlI CTYRAG 3 cut(s) 116, 142, 641
SmoI CTYRAG 3 cut(s) 116, 142, 641
SnaBI TACGTA 1 cut(s) 259
Sse9I AATT 9 cut(s) 134, 180, 237, 346, 460, 502, 753, 857, 871
SspMI CTAG 1 cut(s) 843
StyD4I CCNGG 2 cut(s) 45, 156
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 6 cut(s) 79, 190, 593, 666, 675, 713
TaiI ACGT 4 cut(s) 71, 261, 512, 770
TaqI TCGA 1 cut(s) 74
TasI AATT 9 cut(s) 134, 180, 237, 346, 460, 502, 753, 857, 871
TfiI GAWTC 2 cut(s) 58, 811
Tru1I TTAA 2 cut(s) 456, 756
Tru9I TTAA 2 cut(s) 456, 756
TscAI CASTG 2 cut(s) 598, 678
TspDTI ATGAA 4 cut(s) 107, 147, 797, 869
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 2 cut(s) 598, 678
Van91I CCANNNNNTGG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 862
VspI ATTAAT 2 cut(s) 456, 756
XagI CCTNNNNNAGG 1 cut(s) 161
XapI RAATTY 2 cut(s) 180, 346
XceI RCATGY 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 852
XspI CTAG 1 cut(s) 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.