Rmu_co8424869.1_g000001

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8424869.1
OG0000279
Physical Location & Seq
Reverse (-)
2 .. 1414
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8424869.1_g000001.1.cds

Sequence Viewer

Length: 1231 bp
atgatacatttacttgatgatcctgaggaacaatattctttgtatttggaaaagagagctgaaaagcagaaacagaatgcacaaaaaagtgaggaggataatcgaaaacataatggagatgaagattatcctttgacatttgaggagtttgtaaagaatgaatttgattcaatcagtcaggagctgaagatttgtatggtacatttatacacccacttaccaacttcttgcatttcactcaaagtggtgaaggacatggtcagagctttgggtttgctcaactctattgaatcttcattgcatactattggtgttgctaatgaagggttgaagttaatcaaagatttcaaagttccaggaagcgttgttggttgccttatgcagttgagaacagactgtacaaaaacactaaagtcgcttccaatggaattctctgttcctattaataaatatgcattaatgaacttctgcctagaaaatgcttgcttaatattctgtactgcatcaacttcttccaaattgcatgttgtagcaggaaaaagaccattggaattgttggtcattgatgaagctgctcaacttaaagaatgtgaatcagcaattcctttacaactatctggtctccgccatgctatccttgtaggagatgagaggcaactccctgccatggttcaaagcaagattgcagcaagtgctgattttggaagaagtttgtttggaaggctggcaaagctgggacacaagaagcacctactcaatgtccagtacaggatgcatccatccatcagtttatttccgaaaagggagttctacgacaaccagatagtagatggtccaaatgtcaaagaaagaagctatgagaggtgcttcctcctgggaaaaatgtaccaatcctattccttcataaatgtagccaatggaaaagaagaatttgatcacagatttagtcagaaaaatatggtggaggttgctgtagtctctgggatagtagcaagcctttataaagattttattggaacaaagaagaaagttagtattggggtcatatcaccatacaaggctcaagtttatgcaattcaagagatactcagaaaatatgctgaaacttctgctactggattctccgtaagtgtgcgatctgttgatgggttccaaggtggtgaagaagatgtgataattatatccactgtccgatgtaatgggaacgggtcagttggtttcttgtcgaacc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

410

Amino Acids

45.91

Weight (kDa)

7.95

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1002
AciI CCGC 1 cut(s) 625
AclWI GGATC 1 cut(s) 14
AcsI RAATTY 3 cut(s) 161, 428, 929
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 5 cut(s) 201, 400, 499, 767, 887
AfiI CCNNNNNNNGG 1 cut(s) 667
AgsI TTSAA 6 cut(s) 171, 290, 331, 349, 674, 1079
AjnI CCWGG 2 cut(s) 355, 873
AluBI AGCT 6 cut(s) 59, 184, 266, 572, 733, 855
AluI AGCT 6 cut(s) 59, 184, 266, 572, 733, 855
Alw26I GTCTC 2 cut(s) 626, 982
AlwI GGATC 1 cut(s) 14
AlwNI CAGNNNCTG 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 572, 686
ApoI RAATTY 3 cut(s) 161, 428, 929
AseI ATTAAT 2 cut(s) 444, 458
AspS9I GGNCC 1 cut(s) 833
AsuHPI GGTGA 3 cut(s) 259, 1041, 1172
AvaII GGWCC 1 cut(s) 833
AxyI CCTNAGG 1 cut(s) 24
BbvI GCAGC 2 cut(s) 559, 698
BccI CCATC 4 cut(s) 787, 791, 824, 1139
BciT130I CCWGG 2 cut(s) 357, 875
BclI TGATCA 1 cut(s) 934
BcoDI GTCTC 2 cut(s) 626, 982
BfaI CTAG 1 cut(s) 473
BfmI CTRYAG 1 cut(s) 972
BisI GCNGC 2 cut(s) 573, 687
BlsI GCNGC 2 cut(s) 574, 688
Bme1390I CCNGG 2 cut(s) 357, 875
Bme18I GGWCC 1 cut(s) 833
BmgT120I GGNCC 1 cut(s) 833
BmiI GGNNCC 1 cut(s) 1151
BmrFI CCNGG 2 cut(s) 357, 875
BmsI GCATC 3 cut(s) 512, 762, 784
BpuEI CTTGAG 1 cut(s) 1047
BsaI GGTCTC 1 cut(s) 626
BsaJI CCNNGG 3 cut(s) 666, 874, 1153
Bsc4I CCNNNNNNNGG 1 cut(s) 667
Bse1I ACTGG 2 cut(s) 763, 1120
Bse21I CCTNAGG 1 cut(s) 24
Bse3DI GCAATG 1 cut(s) 296
BseBI CCWGG 2 cut(s) 357, 875
BseDI CCNNGG 3 cut(s) 666, 874, 1153
BseGI GGATG 3 cut(s) 775, 777, 779
BseLI CCNNNNNNNGG 1 cut(s) 667
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 2 cut(s) 15, 1102
BseNI ACTGG 2 cut(s) 763, 1120
BseRI GAGGAG 2 cut(s) 107, 158
BseXI GCAGC 2 cut(s) 559, 698
BseYI CCCAGC 1 cut(s) 733
BslFI GGGAC 1 cut(s) 750
BslI CCNNNNNNNGG 1 cut(s) 667
BsmAI GTCTC 2 cut(s) 626, 982
BsmFI GGGAC 1 cut(s) 750
BsmI GAATGC 1 cut(s) 82
Bso31I GGTCTC 1 cut(s) 626
Bsp1407I TGTACA 1 cut(s) 398
Bsp143I GATC 3 cut(s) 19, 934, 1136
Bsp19I CCATGG 1 cut(s) 666
BspACI CCGC 1 cut(s) 625
BspCNI CTCAG 2 cut(s) 16, 1101
BspLI GGNNCC 1 cut(s) 1151
BspPI GGATC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 296
BsrGI TGTACA 1 cut(s) 398
BsrI ACTGG 2 cut(s) 763, 1120
BssECI CCNNGG 3 cut(s) 666, 874, 1153
BssMI GATC 3 cut(s) 19, 934, 1136
BssT1I CCWWGG 2 cut(s) 666, 1153
Bst2UI CCWGG 2 cut(s) 357, 875
Bst4CI ACNGT 2 cut(s) 398, 1189
BstAPI GCANNNNNTGC 1 cut(s) 692
BstAUI TGTACA 1 cut(s) 398
BstC8I GCNNGC 3 cut(s) 484, 726, 994
BstDEI CTNAG 2 cut(s) 24, 1088
BstDSI CCRYGG 1 cut(s) 666
BstF5I GGATG 3 cut(s) 775, 777, 779
BstKTI GATC 3 cut(s) 22, 937, 1139
BstMAI GTCTC 2 cut(s) 626, 982
BstMBI GATC 3 cut(s) 19, 934, 1136
BstMWI GCNNNNNNNGC 2 cut(s) 692, 730
BstNI CCWGG 2 cut(s) 357, 875
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 2 cut(s) 355, 873
BstSFI CTRYAG 1 cut(s) 972
BstV1I GCAGC 2 cut(s) 559, 698
Bsu36I CCTNAGG 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 666
BtsCI GGATG 3 cut(s) 775, 777, 779
BtsIMutI CAGTG 1 cut(s) 1185
Cac8I GCNNGC 3 cut(s) 484, 726, 994
CaiI CAGNNNCTG 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 833
Csp6I GTAC 5 cut(s) 200, 399, 498, 766, 886
CviAII CATG 4 cut(s) 256, 524, 629, 667
CviQI GTAC 5 cut(s) 200, 399, 498, 766, 886
DdeI CTNAG 2 cut(s) 24, 1088
DpnI GATC 3 cut(s) 21, 936, 1138
DpnII GATC 3 cut(s) 19, 934, 1136
EciI GGCGGA 1 cut(s) 614
Eco130I CCWWGG 2 cut(s) 666, 1153
Eco31I GGTCTC 1 cut(s) 626
Eco47I GGWCC 1 cut(s) 833
Eco57I CTGAAG 1 cut(s) 206
Eco81I CCTNAGG 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 428
EcoRII CCWGG 2 cut(s) 355, 873
EcoT14I CCWWGG 2 cut(s) 666, 1153
EcoT22I ATGCAT 2 cut(s) 457, 777
ErhI CCWWGG 2 cut(s) 666, 1153
FaeI CATG 4 cut(s) 259, 527, 632, 670
FaqI GGGAC 1 cut(s) 750
FatI CATG 4 cut(s) 255, 523, 628, 666
FbaI TGATCA 1 cut(s) 934
Fnu4HI GCNGC 2 cut(s) 573, 687
FokI GGATG 3 cut(s) 762, 766, 784
Fsp4HI GCNGC 2 cut(s) 573, 687
FspBI CTAG 1 cut(s) 473
GluI GCNGC 2 cut(s) 573, 687
GsaI CCCAGC 1 cut(s) 737
Hin1II CATG 4 cut(s) 259, 527, 632, 670
HinfI GANTC 4 cut(s) 167, 290, 593, 1119
HphI GGTGA 3 cut(s) 259, 1041, 1172
Hpy188I TCNGA 5 cut(s) 263, 798, 951, 1091, 1193
Hpy188III TCNNGA 3 cut(s) 23, 179, 1079
HpyAV CCTTC 4 cut(s) 244, 317, 714, 910
HpyCH4III ACNGT 2 cut(s) 398, 1189
HpyF10VI GCNNNNNNNGC 2 cut(s) 692, 730
HpyF3I CTNAG 2 cut(s) 24, 1088
Hsp92II CATG 4 cut(s) 259, 527, 632, 670
Ksp22I TGATCA 1 cut(s) 934
Kzo9I GATC 3 cut(s) 19, 934, 1136
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 2 cut(s) 559, 698
LweI GCATC 3 cut(s) 512, 762, 784
MaeI CTAG 1 cut(s) 473
MalI GATC 3 cut(s) 21, 936, 1138
MboI GATC 3 cut(s) 19, 934, 1136
MboII GAAGA 9 cut(s) 134, 199, 285, 504, 717, 938, 1036, 1175, 1178
MluCI AATT 8 cut(s) 161, 428, 518, 551, 600, 929, 1074, 1176
MnlI CCTC 8 cut(s) 19, 85, 88, 136, 645, 855, 881, 958
Mph1103I ATGCAT 2 cut(s) 457, 777
MseI TTAA 5 cut(s) 335, 444, 458, 488, 582
MspR9I CCNGG 2 cut(s) 357, 875
Mva1269I GAATGC 1 cut(s) 82
MvaI CCWGG 2 cut(s) 357, 875
MwoI GCNNNNNNNGC 2 cut(s) 692, 730
NcoI CCATGG 1 cut(s) 666
NdeII GATC 3 cut(s) 19, 934, 1136
NlaIII CATG 4 cut(s) 259, 527, 632, 670
NlaIV GGNNCC 1 cut(s) 1151
NsiI ATGCAT 2 cut(s) 457, 777
NspI RCATGY 1 cut(s) 527
PctI GAATGC 1 cut(s) 82
PfeI GAWTC 4 cut(s) 167, 290, 593, 1119
PflFI GACNNNGTC 1 cut(s) 257
PfoI TCCNGGA 1 cut(s) 355
PkrI GCNGC 2 cut(s) 574, 688
PshBI ATTAAT 2 cut(s) 444, 458
PsiI TTATAA 1 cut(s) 1002
Psp6I CCWGG 2 cut(s) 355, 873
PspFI CCCAGC 1 cut(s) 733
PspGI CCWGG 2 cut(s) 355, 873
PspN4I GGNNCC 1 cut(s) 1151
PspPI GGNCC 1 cut(s) 833
PsrI GAACNNNNNNTAC 2 cut(s) 382, 414
PstNI CAGNNNCTG 1 cut(s) 184
PsyI GACNNNGTC 1 cut(s) 257
RsaI GTAC 5 cut(s) 201, 400, 499, 767, 887
RsaNI GTAC 5 cut(s) 200, 399, 498, 766, 886
SaqAI TTAA 5 cut(s) 335, 444, 458, 488, 582
SatI GCNGC 2 cut(s) 573, 687
Sau3AI GATC 3 cut(s) 19, 934, 1136
Sau96I GGNCC 1 cut(s) 833
ScrFI CCNGG 2 cut(s) 357, 875
SfaNI GCATC 3 cut(s) 512, 762, 784
SfcI CTRYAG 1 cut(s) 972
SinI GGWCC 1 cut(s) 833
SmlI CTYRAG 1 cut(s) 1062
SmoI CTYRAG 1 cut(s) 1062
Sse9I AATT 8 cut(s) 161, 428, 518, 551, 600, 929, 1074, 1176
SsiI CCGC 1 cut(s) 625
SspI AATATT 2 cut(s) 35, 492
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 2 cut(s) 355, 873
StyI CCWWGG 2 cut(s) 666, 1153
TaaI ACNGT 2 cut(s) 398, 1189
TaqI TCGA 2 cut(s) 103, 1226
TasI AATT 8 cut(s) 161, 428, 518, 551, 600, 929, 1074, 1176
TatI WGTACW 3 cut(s) 398, 497, 765
TfiI GAWTC 4 cut(s) 167, 290, 593, 1119
Tru1I TTAA 5 cut(s) 335, 444, 458, 488, 582
Tru9I TTAA 5 cut(s) 335, 444, 458, 488, 582
TscAI CASTG 1 cut(s) 1192
TseI GCWGC 2 cut(s) 572, 686
TspDTI ATGAA 7 cut(s) 135, 174, 285, 336, 476, 582, 892
TspGWI ACGGA 1 cut(s) 1114
TspRI CASTG 1 cut(s) 1192
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 833
VspI ATTAAT 2 cut(s) 444, 458
XapI RAATTY 3 cut(s) 161, 428, 929
XceI RCATGY 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 1 cut(s) 827
XspI CTAG 1 cut(s) 473
Zsp2I ATGCAT 2 cut(s) 457, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.