MD08G1077700.v1.1

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000279
Physical Location & Seq
Forward (+)
6488492 .. 6489000
509 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1077700.v1.1.491

Sequence Viewer

Length: 351 bp
ATGGTGCCCCTGGAATTGTTAGTCATGGATGAAGCTGCTCAGCTTAAAGAATGCGAATCAGCAATTCTGTTACAACTACCAGGTCTTCGCCATGCTATTCTCATAGGAGGTGAGAGGCAACTCCCTGCATTGGTTGAAAGCAAGATCTCTGAGAAGGCTGAATTTGGAAGAAGTTTGTTCCACAGACTTGTACTGTTAGGACACGAGAAGCACCTGCTCAATGTCCAGTATACGATGCATCCTTCAATCAGCTTGTTTCTGAAAAGGGAATTTTACGACAATCAGATATTAGATGGTCCAAATCTCAATGAAATGAGCTACAAGAAGTGCTTCCTTGATGAAAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

117

Amino Acids

13.32

Weight (kDa)

5.93

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_11 PF13086 4 - 48 7.7e-06 AAA domain
AAA_12 PF13087 56 - 108 1.2e-10 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 222
Acc36I ACCTGC 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 230
AcsI RAATTY 3 cut(s) 161, 269, 345
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 2 cut(s) 137, 246
AjnI CCWGG 2 cut(s) 9, 79
AluBI AGCT 4 cut(s) 35, 43, 252, 318
AluI AGCT 4 cut(s) 35, 43, 252, 318
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 3 cut(s) 161, 269, 345
Asp700I GAANNNNTTC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 9
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 287
BciT130I CCWGG 2 cut(s) 11, 81
BfuAI ACCTGC 1 cut(s) 222
BglII AGATCT 1 cut(s) 144
BisI GCNGC 1 cut(s) 36
BlpI GCTNAGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 11, 81
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 11, 81
BmsI GCATC 2 cut(s) 225, 247
BpiI GAAGAC 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 226
BseBI CCWGG 2 cut(s) 11, 81
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 34, 238
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 2 cut(s) 53, 141
BseNI ACTGG 1 cut(s) 226
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 4
BslI CCNNNNNNNGG 1 cut(s) 130
BsmI GAATGC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 144
Bsp1720I GCTNAGC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 52, 142
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 1 cut(s) 144
BssNAI GTATAC 1 cut(s) 231
BssSI CACGAG 1 cut(s) 203
Bst1107I GTATAC 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 203
Bst2UI CCWGG 2 cut(s) 11, 81
Bst4CI ACNGT 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 39, 150
BstF5I GGATG 2 cut(s) 34, 238
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstNI CCWGG 2 cut(s) 11, 81
BstSCI CCNGG 2 cut(s) 9, 79
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BstZ17I GTATAC 1 cut(s) 231
BtsCI GGATG 2 cut(s) 34, 238
BveI ACCTGC 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 296
CsiI ACCWGGT 1 cut(s) 79
Csp6I GTAC 1 cut(s) 191
CviAII CATG 2 cut(s) 25, 92
CviJI RGCY 5 cut(s) 35, 43, 158, 252, 318
CviKI_1 RGCY 5 cut(s) 35, 43, 158, 252, 318
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 2 cut(s) 39, 150
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 296
EcoRII CCWGG 2 cut(s) 9, 79
EcoT22I ATGCAT 1 cut(s) 240
FaeI CATG 2 cut(s) 28, 95
FaiI YATR 4 cut(s) 26, 93, 104, 231
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FatI CATG 2 cut(s) 24, 91
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 41, 225
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
Hin1II CATG 2 cut(s) 28, 95
HinfI GANTC 1 cut(s) 56
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 3 cut(s) 151, 261, 285
Hpy8I GTNNAC 1 cut(s) 231
HpyAV CCTTC 2 cut(s) 148, 252
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 128, 238
HpyF3I CTNAG 2 cut(s) 39, 150
Hsp92II CATG 2 cut(s) 28, 95
Kzo9I GATC 1 cut(s) 144
LpnPI CCDG 6 cut(s) 23, 66, 93, 138, 227, 239
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 225, 247
MabI ACCWGGT 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 69
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 2 cut(s) 77, 180
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 5 cut(s) 14, 63, 161, 269, 345
MnlI CCTC 2 cut(s) 101, 108
Mph1103I ATGCAT 1 cut(s) 240
MroXI GAANNNNTTC 1 cut(s) 329
MseI TTAA 2 cut(s) 45, 349
MspR9I CCNGG 2 cut(s) 11, 81
Mva1269I GAATGC 1 cut(s) 56
MvaI CCWGG 2 cut(s) 11, 81
NdeII GATC 1 cut(s) 144
NlaIII CATG 2 cut(s) 28, 95
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 240
PaqCI CACCTGC 1 cut(s) 222
PctI GAATGC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 9, 79
PspGI CCWGG 2 cut(s) 9, 79
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 296
PsuI RGATCY 1 cut(s) 144
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 45, 349
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 1 cut(s) 296
ScrFI CCNGG 2 cut(s) 11, 81
SduI GDGCHC 1 cut(s) 9
SetI ASST 7 cut(s) 37, 45, 85, 112, 216, 254, 320
SexAI ACCWGGT 1 cut(s) 79
SfaNI GCATC 2 cut(s) 225, 247
SinI GGWCC 1 cut(s) 296
Sse9I AATT 5 cut(s) 14, 63, 161, 269, 345
StyD4I CCNGG 2 cut(s) 9, 79
TaaI ACNGT 1 cut(s) 195
TasI AATT 5 cut(s) 14, 63, 161, 269, 345
TatI WGTACW 1 cut(s) 190
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 2 cut(s) 45, 349
Tru9I TTAA 2 cut(s) 45, 349
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 45, 324
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 3 cut(s) 161, 269, 345
XmiI GTMKAC 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.