AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 311 |
| AciI | CCGC | 1 cut(s) | 718 |
| AclWI | GGATC | 1 cut(s) | 121 |
| AcsI | RAATTY | 6 cut(s) | 249, 422, 523, 795, 842, 974 |
| AcuI | CTGAAG | 1 cut(s) | 1446 |
| AcvI | CACGTG | 1 cut(s) | 1118 |
| AfaI | GTAC | 3 cut(s) | 493, 592, 923 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 311, 519, 760, 1209 |
| AflIII | ACRYGT | 1 cut(s) | 1115 |
| AgsI | TTSAA | 7 cut(s) | 364, 959, 1087, 1155, 1324, 1460, 1485 |
| AjnI | CCWGG | 1 cut(s) | 280 |
| AleI | CACNNNNGTG | 1 cut(s) | 140 |
| Alw26I | GTCTC | 2 cut(s) | 719, 895 |
| AlwI | GGATC | 1 cut(s) | 121 |
| AoxI | GGCC | 2 cut(s) | 368, 929 |
| ApeKI | GCWGC | 2 cut(s) | 665, 1265 |
| ApoI | RAATTY | 6 cut(s) | 249, 422, 523, 795, 842, 974 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 167, 1442 |
| AspS9I | GGNCC | 3 cut(s) | 275, 635, 929 |
| AsuHPI | GGTGA | 2 cut(s) | 296, 1052 |
| AsuII | TTCGAA | 1 cut(s) | 1376 |
| AsuNHI | GCTAGC | 1 cut(s) | 1189 |
| AvaII | GGWCC | 2 cut(s) | 275, 635 |
| BbrPI | CACGTG | 1 cut(s) | 1118 |
| BbsI | GAAGAC | 2 cut(s) | 1242, 1434 |
| BbvI | GCAGC | 2 cut(s) | 652, 1252 |
| BccI | CCATC | 1 cut(s) | 1498 |
| BciT130I | CCWGG | 1 cut(s) | 282 |
| BclI | TGATCA | 1 cut(s) | 847 |
| BcoDI | GTCTC | 2 cut(s) | 719, 895 |
| BfaI | CTAG | 5 cut(s) | 53, 711, 1167, 1190, 1314 |
| BfmI | CTRYAG | 1 cut(s) | 885 |
| BisI | GCNGC | 2 cut(s) | 666, 1266 |
| BlpI | GCTNAGC | 1 cut(s) | 669 |
| BlsI | GCNGC | 2 cut(s) | 667, 1267 |
| Bme1390I | CCNGG | 1 cut(s) | 282 |
| Bme18I | GGWCC | 2 cut(s) | 275, 635 |
| BmgT120I | GGNCC | 3 cut(s) | 275, 635, 929 |
| BmiI | GGNNCC | 2 cut(s) | 930, 1031 |
| BmrFI | CCNGG | 1 cut(s) | 282 |
| BmrI | ACTGGG | 1 cut(s) | 934 |
| BmsI | GCATC | 2 cut(s) | 421, 605 |
| BmtI | GCTAGC | 1 cut(s) | 1193 |
| BmuI | ACTGGG | 1 cut(s) | 934 |
| BpiI | GAAGAC | 2 cut(s) | 1242, 1434 |
| BpmI | CTGGAG | 2 cut(s) | 422, 1295 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1251 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 669 |
| Bpu14I | TTCGAA | 1 cut(s) | 1376 |
| BpuEI | CTTGAG | 2 cut(s) | 770, 927 |
| BsaAI | YACGTR | 1 cut(s) | 1118 |
| BsaJI | CCNNGG | 2 cut(s) | 374, 1033 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 311, 519, 760, 1209 |
| Bse118I | RCCGGY | 1 cut(s) | 1089 |
| Bse1I | ACTGG | 4 cut(s) | 439, 645, 929, 1000 |
| Bse3DI | GCAATG | 2 cut(s) | 321, 765 |
| BseBI | CCWGG | 1 cut(s) | 282 |
| BseDI | CCNNGG | 2 cut(s) | 374, 1033 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 311, 519, 760, 1209 |
| BseMI | GCAATG | 2 cut(s) | 321, 765 |
| BseMII | CTCAG | 3 cut(s) | 683, 982, 1265 |
| BseNI | ACTGG | 4 cut(s) | 439, 645, 929, 1000 |
| BseXI | GCAGC | 2 cut(s) | 652, 1252 |
| BsgI | GTGCAG | 1 cut(s) | 140 |
| BshFI | GGCC | 2 cut(s) | 370, 931 |
| BsiSI | CCGG | 1 cut(s) | 1090 |
| BslFI | GGGAC | 1 cut(s) | 495 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 311, 519, 760, 1209 |
| BsmAI | GTCTC | 2 cut(s) | 719, 895 |
| BsmFI | GGGAC | 1 cut(s) | 495 |
| BsmI | GAATGC | 1 cut(s) | 353 |
| BsnI | GGCC | 2 cut(s) | 370, 931 |
| Bsp119I | TTCGAA | 1 cut(s) | 1376 |
| Bsp1407I | TGTACA | 1 cut(s) | 491 |
| Bsp143I | GATC | 3 cut(s) | 126, 847, 1016 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 669 |
| BspACI | CCGC | 1 cut(s) | 718 |
| BspANI | GGCC | 2 cut(s) | 370, 931 |
| BspCNI | CTCAG | 3 cut(s) | 682, 981, 1264 |
| BspLI | GGNNCC | 2 cut(s) | 930, 1031 |
| BspOI | GCTAGC | 1 cut(s) | 1193 |
| BspPI | GGATC | 1 cut(s) | 121 |
| BspT104I | TTCGAA | 1 cut(s) | 1376 |
| BsrDI | GCAATG | 2 cut(s) | 321, 765 |
| BsrFI | RCCGGY | 1 cut(s) | 1089 |
| BsrGI | TGTACA | 1 cut(s) | 491 |
| BsrI | ACTGG | 4 cut(s) | 439, 645, 929, 1000 |
| BssAI | RCCGGY | 1 cut(s) | 1089 |
| BssECI | CCNNGG | 2 cut(s) | 374, 1033 |
| BssMI | GATC | 3 cut(s) | 126, 847, 1016 |
| BssT1I | CCWWGG | 2 cut(s) | 374, 1033 |
| Bst2UI | CCWGG | 1 cut(s) | 282 |
| Bst4CI | ACNGT | 3 cut(s) | 708, 1217, 1469 |
| BstAUI | TGTACA | 1 cut(s) | 491 |
| BstBAI | YACGTR | 1 cut(s) | 1118 |
| BstBI | TTCGAA | 1 cut(s) | 1376 |
| BstC8I | GCNNGC | 2 cut(s) | 577, 1191 |
| BstDEI | CTNAG | 4 cut(s) | 565, 669, 968, 1251 |
| BstKTI | GATC | 3 cut(s) | 129, 850, 1019 |
| BstMAI | GTCTC | 2 cut(s) | 719, 895 |
| BstMBI | GATC | 3 cut(s) | 126, 847, 1016 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 777, 1199, 1262 |
| BstNI | CCWGG | 1 cut(s) | 282 |
| BstNSI | RCATGY | 2 cut(s) | 236, 620 |
| BstSCI | CCNGG | 1 cut(s) | 280 |
| BstSFI | CTRYAG | 1 cut(s) | 885 |
| BstV1I | GCAGC | 2 cut(s) | 652, 1252 |
| BstV2I | GAAGAC | 2 cut(s) | 1242, 1434 |
| BsuRI | GGCC | 2 cut(s) | 370, 931 |
| BtsIMutI | CAGTG | 1 cut(s) | 638 |
| Cac8I | GCNNGC | 2 cut(s) | 577, 1191 |
| Cfr10I | RCCGGY | 1 cut(s) | 1089 |
| Cfr13I | GGNCC | 3 cut(s) | 275, 635, 929 |
| Csp6I | GTAC | 3 cut(s) | 492, 591, 922 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 627, 662 |
| CviAII | CATG | 5 cut(s) | 197, 233, 456, 617, 722 |
| CviQI | GTAC | 3 cut(s) | 492, 591, 922 |
| DdeI | CTNAG | 4 cut(s) | 565, 669, 968, 1251 |
| DpnI | GATC | 3 cut(s) | 128, 849, 1018 |
| DpnII | GATC | 3 cut(s) | 126, 847, 1016 |
| EciI | GGCGGA | 1 cut(s) | 707 |
| Eco130I | CCWWGG | 2 cut(s) | 374, 1033 |
| Eco147I | AGGCCT | 1 cut(s) | 370 |
| Eco47I | GGWCC | 2 cut(s) | 275, 635 |
| Eco57I | CTGAAG | 1 cut(s) | 1446 |
| Eco72I | CACGTG | 1 cut(s) | 1118 |
| EcoRI | GAATTC | 1 cut(s) | 523 |
| EcoRII | CCWGG | 1 cut(s) | 280 |
| EcoT14I | CCWWGG | 2 cut(s) | 374, 1033 |
| EcoT22I | ATGCAT | 1 cut(s) | 353 |
| ErhI | CCWWGG | 2 cut(s) | 374, 1033 |
| FaeI | CATG | 5 cut(s) | 200, 236, 459, 620, 725 |
| FaqI | GGGAC | 1 cut(s) | 495 |
| FatI | CATG | 5 cut(s) | 196, 232, 455, 616, 721 |
| FbaI | TGATCA | 1 cut(s) | 847 |
| Fnu4HI | GCNGC | 2 cut(s) | 666, 1266 |
| Fsp4HI | GCNGC | 2 cut(s) | 666, 1266 |
| FspBI | CTAG | 5 cut(s) | 53, 711, 1167, 1190, 1314 |
| GluI | GCNGC | 2 cut(s) | 666, 1266 |
| GsuI | CTGGAG | 2 cut(s) | 422, 1295 |
| HaeIII | GGCC | 2 cut(s) | 370, 931 |
| HapII | CCGG | 1 cut(s) | 1090 |
| Hin1II | CATG | 5 cut(s) | 200, 236, 459, 620, 725 |
| HincII | GTYRAC | 1 cut(s) | 222 |
| HindII | GTYRAC | 1 cut(s) | 222 |
| HinfI | GANTC | 5 cut(s) | 223, 266, 686, 1172, 1310 |
| HpaII | CCGG | 1 cut(s) | 1090 |
| HphI | GGTGA | 2 cut(s) | 296, 1052 |
| Hpy166II | GTNNAC | 2 cut(s) | 222, 492 |
| Hpy188I | TCNGA | 5 cut(s) | 255, 864, 971, 991, 1426 |
| Hpy188III | TCNNGA | 2 cut(s) | 428, 959 |
| Hpy8I | GTNNAC | 2 cut(s) | 222, 492 |
| HpyAV | CCTTC | 5 cut(s) | 186, 523, 823, 1332, 1432 |
| HpyCH4III | ACNGT | 3 cut(s) | 708, 1217, 1469 |
| HpyCH4IV | ACGT | 3 cut(s) | 1117, 1329, 1386 |
| HpyCH4V | TGCA | 8 cut(s) | 121, 236, 351, 596, 616, 758, 953, 1121 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 777, 1199, 1262 |
| HpyF3I | CTNAG | 4 cut(s) | 565, 669, 968, 1251 |
| HpySE526I | ACGT | 3 cut(s) | 1117, 1329, 1386 |
| Hsp92II | CATG | 5 cut(s) | 200, 236, 459, 620, 725 |
| Ksp22I | TGATCA | 1 cut(s) | 847 |
| Kzo9I | GATC | 3 cut(s) | 126, 847, 1016 |
| LmnI | GCTCC | 2 cut(s) | 459, 1276 |
| Lsp1109I | GCAGC | 2 cut(s) | 652, 1252 |
| LweI | GCATC | 2 cut(s) | 421, 605 |
| MaeI | CTAG | 5 cut(s) | 53, 711, 1167, 1190, 1314 |
| MaeII | ACGT | 3 cut(s) | 1117, 1329, 1386 |
| MaeIII | GTNAC | 5 cut(s) | 34, 142, 155, 228, 284 |
| MalI | GATC | 3 cut(s) | 128, 849, 1018 |
| MboI | GATC | 3 cut(s) | 126, 847, 1016 |
| MfeI | CAATTG | 1 cut(s) | 476 |
| MlyI | GAGTC | 3 cut(s) | 217, 1166, 1304 |
| MmeI | TCCRAC | 2 cut(s) | 292, 842 |
| MnlI | CCTC | 8 cut(s) | 181, 288, 381, 446, 738, 768, 794, 871 |
| Mph1103I | ATGCAT | 1 cut(s) | 353 |
| MroXI | GAANNNNTTC | 2 cut(s) | 167, 1442 |
| MseI | TTAA | 8 cut(s) | 444, 537, 551, 581, 675, 765, 1023, 1302 |
| MslI | CAYNNNNRTG | 1 cut(s) | 140 |
| MspA1I | CMGCKG | 2 cut(s) | 272, 1265 |
| MspI | CCGG | 1 cut(s) | 1090 |
| MspR9I | CCNGG | 1 cut(s) | 282 |
| MunI | CAATTG | 1 cut(s) | 476 |
| Mva1269I | GAATGC | 1 cut(s) | 353 |
| MvaI | CCWGG | 1 cut(s) | 282 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 777, 1199, 1262 |
| NdeII | GATC | 3 cut(s) | 126, 847, 1016 |
| NheI | GCTAGC | 1 cut(s) | 1189 |
| NlaIII | CATG | 5 cut(s) | 200, 236, 459, 620, 725 |
| NlaIV | GGNNCC | 2 cut(s) | 930, 1031 |
| NmuCI | GTSAC | 3 cut(s) | 142, 228, 284 |
| NsiI | ATGCAT | 1 cut(s) | 353 |
| NspI | RCATGY | 2 cut(s) | 236, 620 |
| NspV | TTCGAA | 1 cut(s) | 1376 |
| OliI | CACNNNNGTG | 1 cut(s) | 140 |
| PceI | AGGCCT | 1 cut(s) | 370 |
| PctI | GAATGC | 1 cut(s) | 353 |
| PdmI | GAANNNNTTC | 2 cut(s) | 167, 1442 |
| PfeI | GAWTC | 2 cut(s) | 266, 686 |
| PflFI | GACNNNGTC | 1 cut(s) | 226 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 311 |
| PkrI | GCNGC | 2 cut(s) | 667, 1267 |
| PleI | GAGTC | 3 cut(s) | 217, 1166, 1304 |
| PmaCI | CACGTG | 1 cut(s) | 1118 |
| PmlI | CACGTG | 1 cut(s) | 1118 |
| PpsI | GAGTC | 3 cut(s) | 217, 1166, 1304 |
| Ppu21I | YACGTR | 1 cut(s) | 1118 |
| Psp6I | CCWGG | 1 cut(s) | 280 |
| PspCI | CACGTG | 1 cut(s) | 1118 |
| PspGI | CCWGG | 1 cut(s) | 280 |
| PspN4I | GGNNCC | 2 cut(s) | 930, 1031 |
| PspPI | GGNCC | 3 cut(s) | 275, 635, 929 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 475, 507 |
| PsyI | GACNNNGTC | 1 cut(s) | 226 |
| PvuII | CAGCTG | 2 cut(s) | 272, 1265 |
| RsaI | GTAC | 3 cut(s) | 493, 592, 923 |
| RsaNI | GTAC | 3 cut(s) | 492, 591, 922 |
| RseI | CAYNNNNRTG | 1 cut(s) | 140 |
| SaqAI | TTAA | 8 cut(s) | 444, 537, 551, 581, 675, 765, 1023, 1302 |
| SatI | GCNGC | 2 cut(s) | 666, 1266 |
| Sau3AI | GATC | 3 cut(s) | 126, 847, 1016 |
| Sau96I | GGNCC | 3 cut(s) | 275, 635, 929 |
| SchI | GAGTC | 3 cut(s) | 217, 1166, 1304 |
| ScrFI | CCNGG | 1 cut(s) | 282 |
| SfaNI | GCATC | 2 cut(s) | 421, 605 |
| SfcI | CTRYAG | 1 cut(s) | 885 |
| SfuI | TTCGAA | 1 cut(s) | 1376 |
| SinI | GGWCC | 2 cut(s) | 275, 635 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 140 |
| SmlI | CTYRAG | 2 cut(s) | 785, 942 |
| SmoI | CTYRAG | 2 cut(s) | 785, 942 |
| SseBI | AGGCCT | 1 cut(s) | 370 |
| SsiI | CCGC | 1 cut(s) | 718 |
| SspI | AATATT | 1 cut(s) | 545 |
| SspMI | CTAG | 5 cut(s) | 53, 711, 1167, 1190, 1314 |
| StuI | AGGCCT | 1 cut(s) | 370 |
| StyD4I | CCNGG | 1 cut(s) | 280 |
| StyI | CCWWGG | 2 cut(s) | 374, 1033 |
| TaaI | ACNGT | 3 cut(s) | 708, 1217, 1469 |
| TaiI | ACGT | 3 cut(s) | 1120, 1332, 1389 |
| TaqI | TCGA | 3 cut(s) | 212, 1308, 1376 |
| TatI | WGTACW | 2 cut(s) | 491, 590 |
| TfiI | GAWTC | 2 cut(s) | 266, 686 |
| Tru1I | TTAA | 8 cut(s) | 444, 537, 551, 581, 675, 765, 1023, 1302 |
| Tru9I | TTAA | 8 cut(s) | 444, 537, 551, 581, 675, 765, 1023, 1302 |
| TscAI | CASTG | 1 cut(s) | 645 |
| TseFI | GTSAC | 3 cut(s) | 142, 228, 284 |
| TseI | GCWGC | 2 cut(s) | 665, 1265 |
| Tsp45I | GTSAC | 3 cut(s) | 142, 228, 284 |
| TspDTI | ATGAA | 8 cut(s) | 160, 276, 435, 537, 675, 805, 1248, 1280 |
| TspGWI | ACGGA | 2 cut(s) | 994, 1225 |
| TspRI | CASTG | 1 cut(s) | 645 |
| Tth111I | GACNNNGTC | 1 cut(s) | 226 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 311 |
| VpaK11BI | GGWCC | 2 cut(s) | 275, 635 |
| XapI | RAATTY | 6 cut(s) | 249, 422, 523, 795, 842, 974 |
| XceI | RCATGY | 2 cut(s) | 236, 620 |
| XmnI | GAANNNNTTC | 2 cut(s) | 167, 1442 |
| XspI | CTAG | 5 cut(s) | 53, 711, 1167, 1190, 1314 |
| Zsp2I | ATGCAT | 1 cut(s) | 353 |