Rroxscaffold_7G00205740

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000279
Physical Location & Seq
Forward (+)
55364032 .. 55371137
7106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205740.1

Sequence Viewer

Length: 495 bp
ATGGCAAGCCTGCACTCTTCTCTGCAATTGCCCAGCGCGTGGAGAAGCTTCGACCGCTCCGGCGACTTCGGCGACTCCGATCACCGATCGAACTGCTTGTGCAGAACAAGACCATTGGAATTGTTGGTCTTTGATGAAGCTGCTCAGCTTAAAGAATGTGAATCAACAATTCCTTTACAACTATCTGGTCTCCGCCATGCTATCCTTGTAGGAGATGAGAGGCAACTCCCCGCCATGGTTAAAAACGAGATTGCAGTAACTACTATTTTTGGAAGAAGTTTGTTTGGAAGGCTGGCAAAGTTGGGGCACTTGAAGCATCTACTCAATATTATCAATGACATGTTTCTCTATTGTATCACATATGATAAAATGCAAGAAGAGAAGAGGATAAAAAGGCAAAAAAAGAAAAAGAAAGAAGTAGCGAAGAATGAGAAAGGTACAGAGGGGAATGTTGGATGGGAAGTTAACCAACATTCCTCTTCTTACTACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

164

Amino Acids

18.78

Weight (kDa)

9.19

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_11 PF13086 33 - 82 1.2e-10 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 39
AccBSI CCGCTC 1 cut(s) 57
AccII CGCG 1 cut(s) 38
AciI CCGC 3 cut(s) 55, 193, 231
AfaI GTAC 1 cut(s) 439
AfiI CCNNNNNNNGG 2 cut(s) 39, 235
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 1 cut(s) 313
AluBI AGCT 3 cut(s) 48, 140, 148
AluI AGCT 3 cut(s) 48, 140, 148
Alw26I GTCTC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 450
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BcoDI GTCTC 1 cut(s) 194
BisI GCNGC 1 cut(s) 141
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 142
BmsI GCATC 1 cut(s) 325
Bpu1102I GCTNAGC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 235
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 461
BseLI CCNNNNNNNGG 2 cut(s) 39, 235
BseMII CTCAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 309
BseXI GCAGC 1 cut(s) 127
BseYI CCCAGC 1 cut(s) 32
BsgI GTGCAG 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 38
Bsh1285I CGRYCG 2 cut(s) 55, 89
BsiEI CGRYCG 2 cut(s) 55, 89
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 39, 235
BsmAI GTCTC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 2 cut(s) 79, 86
Bsp1720I GCTNAGC 1 cut(s) 144
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 3 cut(s) 55, 193, 231
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 2 cut(s) 79, 86
BssT1I CCWWGG 1 cut(s) 234
Bst6I CTCTTC 4 cut(s) 22, 372, 377, 484
BstC8I GCNNGC 3 cut(s) 7, 11, 294
BstDEI CTNAG 1 cut(s) 144
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 461
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 2 cut(s) 82, 89
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 2 cut(s) 79, 86
BstMCI CGRYCG 2 cut(s) 55, 89
BstMWI GCNNNNNNNGC 3 cut(s) 54, 69, 313
BstNSI RCATGY 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 309
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 1 cut(s) 461
Cac8I GCNNGC 3 cut(s) 7, 11, 294
CfoI GCGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 438
CviAII CATG 3 cut(s) 197, 235, 340
CviJI RGCY 5 cut(s) 9, 48, 140, 148, 292
CviKI_1 RGCY 5 cut(s) 9, 48, 140, 148, 292
CviQI GTAC 1 cut(s) 438
DdeI CTNAG 1 cut(s) 144
DpnI GATC 2 cut(s) 81, 88
DpnII GATC 2 cut(s) 79, 86
Eam1104I CTCTTC 4 cut(s) 22, 372, 377, 484
EarI CTCTTC 4 cut(s) 22, 372, 377, 484
EciI GGCGGA 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 3 cut(s) 200, 238, 343
FaiI YATR 5 cut(s) 198, 236, 341, 361, 363
FatI CATG 3 cut(s) 196, 234, 339
FauI CCCGC 1 cut(s) 238
FauNDI CATATG 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 468
Fsp4HI GCNGC 1 cut(s) 141
GlaI GCGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 141
GsaI CCCAGC 1 cut(s) 36
HapII CCGG 1 cut(s) 60
HhaI GCGC 1 cut(s) 38
Hin1II CATG 3 cut(s) 200, 238, 343
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 2 cut(s) 74, 161
HpaI GTTAAC 1 cut(s) 466
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 466
HpyAV CCTTC 1 cut(s) 282
HpyCH4V TGCA 5 cut(s) 13, 25, 102, 254, 373
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 69, 313
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 3 cut(s) 200, 238, 343
HspAI GCGC 1 cut(s) 36
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 2 cut(s) 79, 86
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 5 cut(s) 23, 46, 73, 171, 278
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 256
MalI GATC 2 cut(s) 81, 88
MbiI CCGCTC 1 cut(s) 57
MboI GATC 2 cut(s) 79, 86
MboII GAAGA 6 cut(s) 9, 285, 389, 394, 436, 471
MfeI CAATTG 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 3 cut(s) 26, 119, 168
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 4 cut(s) 213, 378, 436, 487
MseI TTAA 3 cut(s) 150, 240, 465
MspI CCGG 1 cut(s) 60
MunI CAATTG 1 cut(s) 26
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 54, 69, 313
NcoI CCATGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 361
NdeII GATC 2 cut(s) 79, 86
NlaIII CATG 3 cut(s) 200, 238, 343
NspI RCATGY 1 cut(s) 343
PciI ACATGT 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 1 cut(s) 161
PflMI CCANNNNNTGG 1 cut(s) 39
PkrI GCNGC 1 cut(s) 142
Ple19I CGATCG 1 cut(s) 89
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PscI ACATGT 1 cut(s) 339
PspFI CCCAGC 1 cut(s) 32
PvuI CGATCG 1 cut(s) 89
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
SaqAI TTAA 3 cut(s) 150, 240, 465
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 2 cut(s) 79, 86
SchI GAGTC 1 cut(s) 68
SduI GDGCHC 1 cut(s) 309
SetI ASST 4 cut(s) 50, 142, 150, 439
SfaNI GCATC 1 cut(s) 325
Sse9I AATT 3 cut(s) 26, 119, 168
SsiI CCGC 3 cut(s) 55, 193, 231
SspI AATATT 1 cut(s) 328
StyI CCWWGG 1 cut(s) 234
TaqI TCGA 2 cut(s) 51, 89
TasI AATT 3 cut(s) 26, 119, 168
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 3 cut(s) 150, 240, 465
Tru9I TTAA 3 cut(s) 150, 240, 465
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 150
Van91I CCANNNNNTGG 1 cut(s) 39
XceI RCATGY 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.