Rroxscaffold_7G00203300

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000279
Physical Location & Seq
Reverse (-)
51915364 .. 51920810
5447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203300.1

Sequence Viewer

Length: 1761 bp
ATGGACAAGGAGAGTAGTAAGCCGAAGAAAGGAGTTGGAGGTAGGAGCTTGATTGATTTGGTCTTCTCTTGGTCTATTAGAGATGTTCTCAATAAAGATCATTACAAAAACCAGGTAACTACGATTCCTGAGACGTTCTCGACCGTAAAGAGTTACATGAAAGCATTTGTTCCTTCACTTCTTGAGGAAACACATGATGAATTACGCTCAAGCATGATGTCCCTGTCGCGGGCACCAACTTGTGAAATTCTAACAGTTGAAACTTCCAAGGATCATAAACCTCCCAAAGACTTGTTTTACCGAATTACATATAAGACGAGACAAGGAGAAGATTATGTAGGAGCATATGAGCCAGATGTTGGTGATGTTATTGCCTTGACCAATGTGAGACCAAAATACATTGATGATTTGAATAGATCCAGAAATTCTTATCTTATTGCTTATGTTATTAATGGATCACAACACGGAAGTTCTGATAAGCTTCCGATACTCGCATCAAAGTCTATCAATGGAGGAGGAGAGTCAGGAAACAAAAAGATTAAGAGCAAGAGTGATACACTTTTTGCTGTTTACCTCATGAACATGACAACAAACGTACGTGTATGGAAAGCTCTGAACTCAGAATTAGGGTCAAACACAAATCTGTTTAAGAAGGTTCTGCAAGTTCAACCACCAAATTCATCACATGGTCAGAATTCTTGCACAATTTGTTTTTCCAATTATAACGGCTGCCCTGAGCTTTCTACTAGATGGCCCACAATGTGTTCTGATCTAAATGATTCCCAAGAGGCTGCAGTTTTGAACTGTATCAGTTTGAGTAAGTGCCATCACCAGAATACGGTCAAGCTAATATGGGGTCCTCCAGGGACTGGAAAAACAAAAACAATTGGTCTGTCACTATTTGCTCTATTTCAGTTAAAGTGCAGAACACTGACATGCACTCCCACCAATATTGCCATCGTAGAAGTGACAACAAGGCTCGTGAGATCGGTTAACCAGTCATTGGATTATGGAAAGTATGGACTTGGAGATATAATTCTATTTGGGAATAGGAGGAGATTGAAGATTGATAATTATGATGACCTTCTTGAGGTATTTCTTGATCATCGTGCTAAAATTCTATCCAAATGTTTTGCCCGATTGTCTGGTTGGAAACATTGGCTAGAGTCAATGATAGACTTACTTGAGGATCCAAACAAAAAATACTCATTGTATTTGCAATCAATAAGGAAAAGACACAATTATAAACATGAAGATTCTGGTGATAGGAGCTCAGCAAGTGATGGTGGAAATGATAATCTAACGTTTGAGCAGTTTGTGAATGATAGACAGGACTCAATGTATTTGAAAAAGAGAGGGGAAAAATACAATAAAGACAATGATAATAGGAGCTCATCAAGTGATGCTTACAATGGTTTTTTGACACTTGAGGAGTTTGTGAAGGAGAAACAGTATTCACAGTATTTGAAAAAGGGAAAGGAAAGATGCGACAATGACGGTGAAGATACTGATAACACAAACTCATCAAGTGATGATGAAACTGATGTTTTGACGTTTGAGGAGTTTGTGAAGGAGAAACAGAATTACATTGGTGAGAATCTGAAGCTGTGTATGGTAAATTTGTATACTCACTTGCCAACTTCTTGCATTTCATTAAAGGAGGTGAAGGACATGATTAGAGCTATTAATTTTCTCGAGTCAATTAAATCTTTACTGTGTCAGGGGTTGGCATTGCTAGTGAAGGGTTCCAATTGGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

586

Amino Acids

66.44

Weight (kDa)

8.44

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 93 - 206 6.8e-10 Domain of unknown function (DUF6469)
AAA_11 PF13086 258 - 443 9.9e-13 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 723, 1245
AccB1I GGYRCC 1 cut(s) 232
AccB7I CCANNNNNTGG 3 cut(s) 359, 869, 1003
AccI GTMKAC 1 cut(s) 1625
AccII CGCG 1 cut(s) 229
AciI CCGC 1 cut(s) 229
AclI AACGTT 1 cut(s) 1304
AclWI GGATC 5 cut(s) 279, 411, 463, 1184, 1197
AcsI RAATTY 6 cut(s) 246, 424, 676, 694, 1116, 1618
AcuI CTGAAG 1 cut(s) 1622
AdeI CACNNNGTG 1 cut(s) 762
AfaI GTAC 1 cut(s) 597
AfiI CCNNNNNNNGG 8 cut(s) 29, 228, 229, 359, 838, 869, 1003, 1090
AflIII ACRYGT 1 cut(s) 598
AgsI TTSAA 7 cut(s) 260, 412, 668, 802, 1063, 1348, 1468
AjnI CCWGG 2 cut(s) 111, 862
AluBI AGCT 9 cut(s) 48, 481, 611, 739, 847, 1272, 1392, 1606, 1682
AluI AGCT 9 cut(s) 48, 481, 611, 739, 847, 1272, 1392, 1606, 1682
Alw21I GWGCWC 2 cut(s) 1274, 1394
Alw26I GTCTC 3 cut(s) 125, 313, 382
AlwI GGATC 5 cut(s) 279, 411, 463, 1184, 1197
AlwNI CAGNNNCTG 1 cut(s) 869
Ama87I CYCGRG 1 cut(s) 1694
AoxI GGCC 1 cut(s) 752
ApeKI GCWGC 2 cut(s) 729, 791
ApoI RAATTY 6 cut(s) 246, 424, 676, 694, 1116, 1618
AseI ATTAAT 2 cut(s) 450, 1686
AspS9I GGNCC 3 cut(s) 753, 857, 1755
AsuHPI GGTGA 6 cut(s) 374, 821, 1274, 1511, 1604, 1675
AvaI CYCGRG 1 cut(s) 1694
AvaII GGWCC 2 cut(s) 857, 1755
BaeGI GKGCMC 1 cut(s) 235
BamHI GGATCC 1 cut(s) 1189
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 2 cut(s) 1274, 1394
BauI CACGAG 1 cut(s) 980
BbsI GAAGAC 1 cut(s) 55
Bbv12I GWGCWC 2 cut(s) 1274, 1394
BbvI GCAGC 2 cut(s) 716, 778
BccI CCATC 4 cut(s) 744, 834, 965, 1277
BceAI ACGGC 1 cut(s) 742
BciT130I CCWGG 2 cut(s) 113, 864
BclI TGATCA 1 cut(s) 1102
BcoDI GTCTC 3 cut(s) 125, 313, 382
BfaI CTAG 3 cut(s) 747, 1163, 1736
BfmI CTRYAG 1 cut(s) 792
BisI GCNGC 2 cut(s) 730, 792
BlpI GCTNAGC 1 cut(s) 1273
BlsI GCNGC 2 cut(s) 731, 793
Bme1390I CCNGG 2 cut(s) 113, 864
Bme18I GGWCC 2 cut(s) 857, 1755
BmeT110I CYCGRG 1 cut(s) 1694
BmgT120I GGNCC 3 cut(s) 753, 857, 1755
BmiI GGNNCC 4 cut(s) 234, 858, 1191, 1747
BmrFI CCNGG 2 cut(s) 113, 864
BmsI GCATC 3 cut(s) 503, 1393, 1475
BpiI GAAGAC 1 cut(s) 55
BplI GAGNNNNNCTC 4 cut(s) 72, 104, 122, 154
BpmI CTGGAG 1 cut(s) 846
Bpu10I CCTNAGC 1 cut(s) 735
Bpu1102I GCTNAGC 1 cut(s) 1273
BpuEI CTTGAG 5 cut(s) 193, 203, 1109, 1205, 1448
BsaAI YACGTR 1 cut(s) 599
BsaI GGTCTC 1 cut(s) 382
BsaJI CCNNGG 2 cut(s) 267, 863
BsaXI ACNNNNNCTCC 4 cut(s) 925, 955, 1436, 1466
Bsc4I CCNNNNNNNGG 8 cut(s) 29, 228, 229, 359, 838, 869, 1003, 1090
Bse1I ACTGG 2 cut(s) 874, 997
Bse3DI GCAATG 1 cut(s) 1730
BseBI CCWGG 2 cut(s) 113, 864
BseDI CCNNGG 2 cut(s) 267, 863
BseLI CCNNNNNNNGG 8 cut(s) 29, 228, 229, 359, 838, 869, 1003, 1090
BseMI GCAATG 1 cut(s) 1730
BseMII CTCAG 4 cut(s) 120, 633, 726, 1287
BseNI ACTGG 2 cut(s) 874, 997
BseRI GAGGAG 5 cut(s) 528, 531, 1069, 1445, 1574
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 2 cut(s) 716, 778
BsgI GTGCAG 1 cut(s) 943
Bsh1236I CGCG 1 cut(s) 229
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 1 cut(s) 754
BshNI GGYRCC 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 2 cut(s) 1274, 1394
BsiHKCI CYCGRG 1 cut(s) 1694
BsiWI CGTACG 1 cut(s) 595
BslFI GGGAC 2 cut(s) 205, 880
BslI CCNNNNNNNGG 8 cut(s) 29, 228, 229, 359, 838, 869, 1003, 1090
BsmAI GTCTC 3 cut(s) 125, 313, 382
BsmBI CGTCTC 1 cut(s) 125
BsmFI GGGAC 2 cut(s) 205, 880
BsnI GGCC 1 cut(s) 754
Bso31I GGTCTC 1 cut(s) 382
BsoBI CYCGRG 1 cut(s) 1694
Bsp1286I GDGCHC 3 cut(s) 235, 1274, 1394
Bsp143I GATC 8 cut(s) 97, 271, 416, 455, 769, 986, 1102, 1189
Bsp1720I GCTNAGC 1 cut(s) 1273
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 754
BspCNI CTCAG 4 cut(s) 121, 632, 727, 1286
BspFNI CGCG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 576
BspLI GGNNCC 4 cut(s) 234, 858, 1191, 1747
BspMAI CTGCAG 1 cut(s) 796
BspPI GGATC 5 cut(s) 279, 411, 463, 1184, 1197
BspT107I GGYRCC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 1730
BsrI ACTGG 2 cut(s) 874, 997
BssECI CCNNGG 2 cut(s) 267, 863
BssMI GATC 8 cut(s) 97, 271, 416, 455, 769, 986, 1102, 1189
BssNAI GTATAC 1 cut(s) 1626
BssSI CACGAG 1 cut(s) 980
BssT1I CCWWGG 1 cut(s) 267
Bst1107I GTATAC 1 cut(s) 1626
Bst2BI CACGAG 1 cut(s) 980
Bst2UI CCWGG 2 cut(s) 113, 864
Bst4CI ACNGT 8 cut(s) 145, 256, 806, 841, 1452, 1461, 1499, 1716
BstBAI YACGTR 1 cut(s) 599
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 4 cut(s) 129, 619, 735, 1273
BstENI CCTNNNNNAGG 1 cut(s) 1088
BstFNI CGCG 1 cut(s) 229
BstKTI GATC 8 cut(s) 100, 274, 419, 458, 772, 989, 1105, 1192
BstMAI GTCTC 3 cut(s) 125, 313, 382
BstMBI GATC 8 cut(s) 97, 271, 416, 455, 769, 986, 1102, 1189
BstMCI CGRYCG 1 cut(s) 144
BstNI CCWGG 2 cut(s) 113, 864
BstNSI RCATGY 1 cut(s) 939
BstSCI CCNGG 2 cut(s) 111, 862
BstSFI CTRYAG 1 cut(s) 792
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 716, 778
BstV2I GAAGAC 1 cut(s) 55
BstX2I RGATCY 2 cut(s) 416, 1189
BstYI RGATCY 2 cut(s) 416, 1189
BstZ17I GTATAC 1 cut(s) 1626
BsuRI GGCC 1 cut(s) 754
BtsIMutI CAGTG 1 cut(s) 929
Cac8I GCNNGC 1 cut(s) 231
CaiI CAGNNNCTG 1 cut(s) 869
CciI TCATGA 1 cut(s) 576
Cfr13I GGNCC 3 cut(s) 753, 857, 1755
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 1 cut(s) 596
CspCI CAANNNNNGTGG 2 cut(s) 934, 969
CviAII CATG 9 cut(s) 157, 194, 214, 577, 583, 686, 936, 1250, 1672
CviQI GTAC 1 cut(s) 596
DdeI CTNAG 4 cut(s) 129, 619, 735, 1273
DpnI GATC 8 cut(s) 99, 273, 418, 457, 771, 988, 1104, 1191
DpnII GATC 8 cut(s) 97, 271, 416, 455, 769, 986, 1102, 1189
DraIII CACNNNGTG 1 cut(s) 762
Ecl136II GAGCTC 2 cut(s) 1272, 1392
Eco130I CCWWGG 1 cut(s) 267
Eco24I GRGCYC 2 cut(s) 1274, 1394
Eco31I GGTCTC 1 cut(s) 382
Eco47I GGWCC 2 cut(s) 857, 1755
Eco53kI GAGCTC 2 cut(s) 1272, 1392
Eco57I CTGAAG 1 cut(s) 1622
Eco88I CYCGRG 1 cut(s) 1694
EcoICRI GAGCTC 2 cut(s) 1272, 1392
EcoNI CCTNNNNNAGG 1 cut(s) 1088
EcoO109I RGGNCCY 1 cut(s) 857
EcoRI GAATTC 1 cut(s) 694
EcoRII CCWGG 2 cut(s) 111, 862
EcoT14I CCWWGG 1 cut(s) 267
EcoT38I GRGCYC 2 cut(s) 1274, 1394
ErhI CCWWGG 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 9 cut(s) 160, 197, 217, 580, 586, 689, 939, 1253, 1675
FalI AAGNNNNNCTT 2 cut(s) 1390, 1422
FaqI GGGAC 2 cut(s) 205, 880
FatI CATG 9 cut(s) 156, 193, 213, 576, 582, 685, 935, 1249, 1671
FauI CCCGC 1 cut(s) 222
FauNDI CATATG 1 cut(s) 346
FbaI TGATCA 1 cut(s) 1102
FblI GTMKAC 1 cut(s) 1625
Fnu4HI GCNGC 2 cut(s) 730, 792
FriOI GRGCYC 2 cut(s) 1274, 1394
Fsp4HI GCNGC 2 cut(s) 730, 792
FspBI CTAG 3 cut(s) 747, 1163, 1736
GluI GCNGC 2 cut(s) 730, 792
GsuI CTGGAG 1 cut(s) 846
HaeIII GGCC 1 cut(s) 754
Hin1II CATG 9 cut(s) 160, 197, 217, 580, 586, 689, 939, 1253, 1675
HincII GTYRAC 1 cut(s) 994
HindII GTYRAC 1 cut(s) 994
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 8 cut(s) 124, 521, 779, 1166, 1256, 1334, 1597, 1697
HpaI GTTAAC 1 cut(s) 994
HphI GGTGA 6 cut(s) 374, 821, 1274, 1511, 1604, 1675
Hpy166II GTNNAC 3 cut(s) 571, 994, 1626
Hpy188I TCNGA 7 cut(s) 475, 486, 615, 622, 693, 769, 1602
Hpy8I GTNNAC 3 cut(s) 571, 994, 1626
HpyAV CCTTC 7 cut(s) 183, 646, 1094, 1435, 1564, 1660, 1735
HpyCH4III ACNGT 8 cut(s) 145, 256, 806, 841, 1452, 1461, 1499, 1716
HpyCH4IV ACGT 5 cut(s) 134, 594, 598, 1304, 1553
HpyCH4V TGCA 7 cut(s) 661, 702, 794, 924, 939, 1219, 1647
HpyF3I CTNAG 4 cut(s) 129, 619, 735, 1273
HpySE526I ACGT 5 cut(s) 134, 594, 598, 1304, 1553
Hsp92II CATG 9 cut(s) 160, 197, 217, 580, 586, 689, 939, 1253, 1675
Ksp22I TGATCA 1 cut(s) 1102
KspAI GTTAAC 1 cut(s) 994
Kzo9I GATC 8 cut(s) 97, 271, 416, 455, 769, 986, 1102, 1189
LmnI GCTCC 4 cut(s) 45, 341, 1269, 1389
Lsp1109I GCAGC 2 cut(s) 716, 778
LweI GCATC 3 cut(s) 503, 1393, 1475
MabI ACCWGGT 1 cut(s) 111
MaeI CTAG 3 cut(s) 747, 1163, 1736
MaeII ACGT 5 cut(s) 134, 594, 598, 1304, 1553
MaeIII GTNAC 4 cut(s) 115, 152, 894, 967
MalI GATC 8 cut(s) 99, 273, 418, 457, 771, 988, 1104, 1191
MboI GATC 8 cut(s) 97, 271, 416, 455, 769, 986, 1102, 1189
MboII GAAGA 6 cut(s) 37, 55, 341, 1075, 1265, 1514
MfeI CAATTG 2 cut(s) 885, 1750
MflI RGATCY 2 cut(s) 416, 1189
MhlI GDGCHC 3 cut(s) 235, 1274, 1394
MlyI GAGTC 4 cut(s) 530, 1175, 1328, 1706
MmeI TCCRAC 2 cut(s) 16, 1130
MseI TTAA 8 cut(s) 450, 540, 648, 917, 993, 1655, 1686, 1704
MslI CAYNNNNRTG 2 cut(s) 581, 934
MspR9I CCNGG 2 cut(s) 113, 864
MunI CAATTG 2 cut(s) 885, 1750
MvaI CCWGG 2 cut(s) 113, 864
MvnI CGCG 1 cut(s) 229
NdeI CATATG 1 cut(s) 346
NdeII GATC 8 cut(s) 97, 271, 416, 455, 769, 986, 1102, 1189
NlaIII CATG 9 cut(s) 160, 197, 217, 580, 586, 689, 939, 1253, 1675
NlaIV GGNNCC 4 cut(s) 234, 858, 1191, 1747
NmuCI GTSAC 2 cut(s) 894, 967
NspI RCATGY 1 cut(s) 939
PaeR7I CTCGAG 1 cut(s) 1694
PagI TCATGA 1 cut(s) 576
PfeI GAWTC 4 cut(s) 124, 779, 1256, 1597
Pfl23II CGTACG 1 cut(s) 595
PflMI CCANNNNNTGG 3 cut(s) 359, 869, 1003
PkrI GCNGC 2 cut(s) 731, 793
PleI GAGTC 4 cut(s) 529, 1174, 1328, 1705
PpsI GAGTC 4 cut(s) 529, 1174, 1328, 1705
Ppu21I YACGTR 1 cut(s) 599
PpuMI RGGWCCY 1 cut(s) 857
PshBI ATTAAT 2 cut(s) 450, 1686
PsiI TTATAA 2 cut(s) 723, 1245
Psp124BI GAGCTC 2 cut(s) 1274, 1394
Psp1406I AACGTT 1 cut(s) 1304
Psp5II RGGWCCY 1 cut(s) 857
Psp6I CCWGG 2 cut(s) 111, 862
PspGI CCWGG 2 cut(s) 111, 862
PspLI CGTACG 1 cut(s) 595
PspN4I GGNNCC 4 cut(s) 234, 858, 1191, 1747
PspPI GGNCC 3 cut(s) 753, 857, 1755
PspPPI RGGWCCY 1 cut(s) 857
PstI CTGCAG 1 cut(s) 796
PstNI CAGNNNCTG 1 cut(s) 869
PsuI RGATCY 2 cut(s) 416, 1189
RsaI GTAC 1 cut(s) 597
RsaNI GTAC 1 cut(s) 596
RseI CAYNNNNRTG 2 cut(s) 581, 934
SacI GAGCTC 2 cut(s) 1274, 1394
SaqAI TTAA 8 cut(s) 450, 540, 648, 917, 993, 1655, 1686, 1704
SatI GCNGC 2 cut(s) 730, 792
Sau3AI GATC 8 cut(s) 97, 271, 416, 455, 769, 986, 1102, 1189
Sau96I GGNCC 3 cut(s) 753, 857, 1755
SchI GAGTC 4 cut(s) 530, 1175, 1328, 1706
ScrFI CCNGG 2 cut(s) 113, 864
SduI GDGCHC 3 cut(s) 235, 1274, 1394
SexAI ACCWGGT 1 cut(s) 111
SfaNI GCATC 3 cut(s) 503, 1393, 1475
SfcI CTRYAG 1 cut(s) 792
Sfr274I CTCGAG 1 cut(s) 1694
SinI GGWCC 2 cut(s) 857, 1755
SlaI CTCGAG 1 cut(s) 1694
SmiMI CAYNNNNRTG 2 cut(s) 581, 934
SmlI CTYRAG 6 cut(s) 182, 208, 1088, 1184, 1427, 1694
SmoI CTYRAG 6 cut(s) 182, 208, 1088, 1184, 1427, 1694
SsiI CCGC 1 cut(s) 229
SspI AATATT 1 cut(s) 952
SspMI CTAG 3 cut(s) 747, 1163, 1736
SstI GAGCTC 2 cut(s) 1274, 1394
StyD4I CCNGG 2 cut(s) 111, 862
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 8 cut(s) 145, 256, 806, 841, 1452, 1461, 1499, 1716
TaiI ACGT 5 cut(s) 137, 597, 601, 1307, 1556
TaqI TCGA 2 cut(s) 140, 1695
TfiI GAWTC 4 cut(s) 124, 779, 1256, 1597
Tru1I TTAA 8 cut(s) 450, 540, 648, 917, 993, 1655, 1686, 1704
Tru9I TTAA 8 cut(s) 450, 540, 648, 917, 993, 1655, 1686, 1704
TscAI CASTG 1 cut(s) 936
TseFI GTSAC 2 cut(s) 894, 967
TseI GCWGC 2 cut(s) 729, 791
Tsp45I GTSAC 2 cut(s) 894, 967
TspDTI ATGAA 7 cut(s) 173, 213, 593, 669, 1266, 1551, 1641
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 1 cut(s) 936
Van91I CCANNNNNTGG 3 cut(s) 359, 869, 1003
VpaK11BI GGWCC 2 cut(s) 857, 1755
VspI ATTAAT 2 cut(s) 450, 1686
XagI CCTNNNNNAGG 1 cut(s) 1088
XapI RAATTY 6 cut(s) 246, 424, 676, 694, 1116, 1618
XceI RCATGY 1 cut(s) 939
XhoI CTCGAG 1 cut(s) 1694
XmiI GTMKAC 1 cut(s) 1625
XspI CTAG 3 cut(s) 747, 1163, 1736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.