AAA domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF6469 | PF20073 | 80 - 212 | 6.5e-14 | Domain of unknown function (DUF6469) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 777 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 365 |
| AciI | CCGC | 2 cut(s) | 1015, 2208 |
| AclWI | GGATC | 3 cut(s) | 121, 134, 2199 |
| AcoI | YGGCCR | 1 cut(s) | 1064 |
| AcsI | RAATTY | 2 cut(s) | 476, 991 |
| AcyI | GRCGYC | 1 cut(s) | 778 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 365, 2309 |
| AflII | CTTAAG | 1 cut(s) | 2291 |
| AhlI | ACTAGT | 1 cut(s) | 31 |
| AjnI | CCWGG | 2 cut(s) | 280, 891 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1594, 1626, 1798, 1830 |
| AleI | CACNNNNGTG | 1 cut(s) | 140 |
| Alw26I | GTCTC | 5 cut(s) | 1172, 1373, 1574, 1778, 1982 |
| AlwI | GGATC | 3 cut(s) | 121, 134, 2199 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 326 |
| AoxI | GGCC | 2 cut(s) | 422, 1064 |
| ApeKI | GCWGC | 2 cut(s) | 48, 1017 |
| ApoI | RAATTY | 2 cut(s) | 476, 991 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 968, 1000, 1109, 1141 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 167, 1475, 1679, 1883, 2087 |
| AspLEI | GCGC | 2 cut(s) | 780, 2336 |
| AspS9I | GGNCC | 1 cut(s) | 344 |
| AsuHPI | GGTGA | 7 cut(s) | 296, 1271, 1472, 1673, 1728, 1877, 2081 |
| AsuII | TTCGAA | 4 cut(s) | 512, 1412, 1613, 1817 |
| AvaII | GGWCC | 1 cut(s) | 344 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1035, 1068 |
| BamHI | GGATCC | 1 cut(s) | 126 |
| BanI | GGYRCC | 1 cut(s) | 777 |
| BbsI | GAAGAC | 3 cut(s) | 227, 1119, 2283 |
| BbvI | GCAGC | 2 cut(s) | 60, 1004 |
| BccI | CCATC | 3 cut(s) | 768, 809, 1056 |
| BceAI | ACGGC | 1 cut(s) | 1803 |
| BciT130I | CCWGG | 2 cut(s) | 282, 893 |
| BciVI | GTATCC | 1 cut(s) | 1036 |
| BclI | TGATCA | 1 cut(s) | 1096 |
| BcoDI | GTCTC | 5 cut(s) | 1172, 1373, 1574, 1778, 1982 |
| BcuI | ACTAGT | 1 cut(s) | 31 |
| BfaI | CTAG | 7 cut(s) | 32, 45, 273, 962, 1340, 1949, 2153 |
| BfmI | CTRYAG | 2 cut(s) | 804, 1089 |
| BfoI | RGCGCY | 1 cut(s) | 781 |
| BfrI | CTTAAG | 1 cut(s) | 2291 |
| BfuI | GTATCC | 1 cut(s) | 1036 |
| BisI | GCNGC | 2 cut(s) | 49, 1018 |
| BlsI | GCNGC | 2 cut(s) | 50, 1019 |
| Bme1390I | CCNGG | 2 cut(s) | 282, 893 |
| Bme18I | GGWCC | 1 cut(s) | 344 |
| BmgT120I | GGNCC | 1 cut(s) | 344 |
| BmiI | GGNNCC | 2 cut(s) | 128, 779 |
| BmrFI | CCNGG | 2 cut(s) | 282, 893 |
| BmrI | ACTGGG | 1 cut(s) | 65 |
| BmsI | GCATC | 5 cut(s) | 1367, 1568, 1772, 1976, 2180 |
| BmuI | ACTGGG | 1 cut(s) | 65 |
| BpiI | GAAGAC | 3 cut(s) | 227, 1119, 2283 |
| BpmI | CTGGAG | 2 cut(s) | 476, 875 |
| Bpu14I | TTCGAA | 4 cut(s) | 512, 1412, 1613, 1817 |
| BpuEI | CTTGAG | 1 cut(s) | 206 |
| BsaBI | GATNNNNATC | 2 cut(s) | 333, 2257 |
| BsaHI | GRCGYC | 1 cut(s) | 778 |
| BsaJI | CCNNGG | 2 cut(s) | 428, 2329 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1499, 1529, 1703, 1733, 1907, 1937 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 365, 2309 |
| Bse118I | RCCGGY | 1 cut(s) | 1066 |
| Bse1I | ACTGG | 2 cut(s) | 60, 493 |
| Bse3DI | GCAATG | 5 cut(s) | 375, 1225, 1426, 1831, 2035 |
| Bse8I | GATNNNNATC | 2 cut(s) | 333, 2257 |
| BseBI | CCWGG | 2 cut(s) | 282, 893 |
| BseDI | CCNNGG | 2 cut(s) | 428, 2329 |
| BseGI | GGATG | 4 cut(s) | 91, 779, 909, 2141 |
| BseJI | GATNNNNATC | 2 cut(s) | 333, 2257 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 365, 2309 |
| BseMI | GCAATG | 5 cut(s) | 375, 1225, 1426, 1831, 2035 |
| BseMII | CTCAG | 2 cut(s) | 639, 2358 |
| BseNI | ACTGG | 2 cut(s) | 60, 493 |
| BseRI | GAGGAG | 1 cut(s) | 1118 |
| BseXI | GCAGC | 2 cut(s) | 60, 1004 |
| BsgI | GTGCAG | 1 cut(s) | 140 |
| BshFI | GGCC | 2 cut(s) | 424, 1066 |
| BshNI | GGYRCC | 1 cut(s) | 777 |
| BsiSI | CCGG | 1 cut(s) | 1067 |
| BslFI | GGGAC | 1 cut(s) | 832 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 365, 2309 |
| BsmAI | GTCTC | 5 cut(s) | 1172, 1373, 1574, 1778, 1982 |
| BsmBI | CGTCTC | 1 cut(s) | 1778 |
| BsmFI | GGGAC | 1 cut(s) | 832 |
| BsmI | GAATGC | 1 cut(s) | 904 |
| BsnI | GGCC | 2 cut(s) | 424, 1066 |
| Bsp119I | TTCGAA | 4 cut(s) | 512, 1412, 1613, 1817 |
| Bsp143I | GATC | 5 cut(s) | 126, 487, 1096, 2204, 2252 |
| BspACI | CCGC | 2 cut(s) | 1015, 2208 |
| BspANI | GGCC | 2 cut(s) | 424, 1066 |
| BspCNI | CTCAG | 2 cut(s) | 638, 2359 |
| BspHI | TCATGA | 2 cut(s) | 688, 1099 |
| BspLI | GGNNCC | 2 cut(s) | 128, 779 |
| BspPI | GGATC | 3 cut(s) | 121, 134, 2199 |
| BspT104I | TTCGAA | 4 cut(s) | 512, 1412, 1613, 1817 |
| BspT107I | GGYRCC | 1 cut(s) | 777 |
| BspTI | CTTAAG | 1 cut(s) | 2291 |
| BsrDI | GCAATG | 5 cut(s) | 375, 1225, 1426, 1831, 2035 |
| BsrFI | RCCGGY | 1 cut(s) | 1066 |
| BsrI | ACTGG | 2 cut(s) | 60, 493 |
| BssAI | RCCGGY | 1 cut(s) | 1066 |
| BssECI | CCNNGG | 2 cut(s) | 428, 2329 |
| BssMI | GATC | 5 cut(s) | 126, 487, 1096, 2204, 2252 |
| BssNI | GRCGYC | 1 cut(s) | 778 |
| BssT1I | CCWWGG | 2 cut(s) | 428, 2329 |
| Bst2UI | CCWGG | 2 cut(s) | 282, 893 |
| Bst4CI | ACNGT | 7 cut(s) | 255, 727, 834, 880, 1000, 1048, 2352 |
| Bst6I | CTCTTC | 2 cut(s) | 5, 1213 |
| BstACI | GRCGYC | 1 cut(s) | 778 |
| BstAFI | CTTAAG | 1 cut(s) | 2291 |
| BstBI | TTCGAA | 4 cut(s) | 512, 1412, 1613, 1817 |
| BstC8I | GCNNGC | 1 cut(s) | 747 |
| BstDEI | CTNAG | 5 cut(s) | 625, 1334, 1943, 2147, 2367 |
| BstF5I | GGATG | 4 cut(s) | 91, 779, 909, 2141 |
| BstH2I | RGCGCY | 1 cut(s) | 781 |
| BstHHI | GCGC | 2 cut(s) | 780, 2336 |
| BstKTI | GATC | 5 cut(s) | 129, 490, 1099, 2207, 2255 |
| BstMAI | GTCTC | 5 cut(s) | 1172, 1373, 1574, 1778, 1982 |
| BstMBI | GATC | 5 cut(s) | 126, 487, 1096, 2204, 2252 |
| BstNI | CCWGG | 2 cut(s) | 282, 893 |
| BstNSI | RCATGY | 1 cut(s) | 236 |
| BstSCI | CCNGG | 2 cut(s) | 280, 891 |
| BstSFI | CTRYAG | 2 cut(s) | 804, 1089 |
| BstV1I | GCAGC | 2 cut(s) | 60, 1004 |
| BstV2I | GAAGAC | 3 cut(s) | 227, 1119, 2283 |
| BstX2I | RGATCY | 2 cut(s) | 126, 2204 |
| BstXI | CCANNNNNNTGG | 6 cut(s) | 1062, 1375, 1576, 1780, 1984, 2188 |
| BstYI | RGATCY | 2 cut(s) | 126, 2204 |
| BsuI | GTATCC | 1 cut(s) | 1036 |
| BsuRI | GGCC | 2 cut(s) | 424, 1066 |
| BtsCI | GGATG | 4 cut(s) | 91, 779, 909, 2141 |
| BtsI | GCAGTG | 1 cut(s) | 2232 |
| BtsIMutI | CAGTG | 8 cut(s) | 723, 1005, 1368, 1569, 1773, 1977, 2181, 2232 |
| Cac8I | GCNNGC | 1 cut(s) | 747 |
| CaiI | CAGNNNCTG | 1 cut(s) | 326 |
| CciI | TCATGA | 2 cut(s) | 688, 1099 |
| CfoI | GCGC | 2 cut(s) | 780, 2336 |
| Cfr10I | RCCGGY | 1 cut(s) | 1066 |
| Cfr13I | GGNCC | 1 cut(s) | 344 |
| CseI | GACGC | 1 cut(s) | 959 |
| DdeI | CTNAG | 5 cut(s) | 625, 1334, 1943, 2147, 2367 |
| DinI | GGCGCC | 1 cut(s) | 779 |
| DpnI | GATC | 5 cut(s) | 128, 489, 1098, 2206, 2254 |
| DpnII | GATC | 5 cut(s) | 126, 487, 1096, 2204, 2252 |
| EaeI | YGGCCR | 1 cut(s) | 1064 |
| Eam1104I | CTCTTC | 2 cut(s) | 5, 1213 |
| EarI | CTCTTC | 2 cut(s) | 5, 1213 |
| Eco130I | CCWWGG | 2 cut(s) | 428, 2329 |
| Eco147I | AGGCCT | 1 cut(s) | 424 |
| Eco32I | GATATC | 1 cut(s) | 373 |
| Eco47I | GGWCC | 1 cut(s) | 344 |
| EcoRII | CCWGG | 2 cut(s) | 280, 891 |
| EcoRV | GATATC | 1 cut(s) | 373 |
| EcoT14I | CCWWGG | 2 cut(s) | 428, 2329 |
| EcoT22I | ATGCAT | 2 cut(s) | 546, 1034 |
| EgeI | GGCGCC | 1 cut(s) | 779 |
| EheI | GGCGCC | 1 cut(s) | 779 |
| ErhI | CCWWGG | 2 cut(s) | 428, 2329 |
| Esp3I | CGTCTC | 1 cut(s) | 1778 |
| FaqI | GGGAC | 1 cut(s) | 832 |
| FauNDI | CATATG | 1 cut(s) | 1171 |
| FbaI | TGATCA | 1 cut(s) | 1096 |
| Fnu4HI | GCNGC | 2 cut(s) | 49, 1018 |
| FokI | GGATG | 4 cut(s) | 98, 786, 896, 2128 |
| Fsp4HI | GCNGC | 2 cut(s) | 49, 1018 |
| FspBI | CTAG | 7 cut(s) | 32, 45, 273, 962, 1340, 1949, 2153 |
| GlaI | GCGC | 2 cut(s) | 779, 2335 |
| GluI | GCNGC | 2 cut(s) | 49, 1018 |
| GsuI | CTGGAG | 2 cut(s) | 476, 875 |
| HaeII | RGCGCY | 1 cut(s) | 781 |
| HaeIII | GGCC | 2 cut(s) | 424, 1066 |
| HapII | CCGG | 1 cut(s) | 1067 |
| HgaI | GACGC | 1 cut(s) | 959 |
| HhaI | GCGC | 2 cut(s) | 780, 2336 |
| Hin1I | GRCGYC | 1 cut(s) | 778 |
| Hin6I | GCGC | 2 cut(s) | 778, 2334 |
| HinP1I | GCGC | 2 cut(s) | 778, 2334 |
| HindIII | AAGCTT | 1 cut(s) | 761 |
| HinfI | GANTC | 7 cut(s) | 223, 334, 730, 865, 2192, 2239, 2296 |
| HpaII | CCGG | 1 cut(s) | 1067 |
| HphI | GGTGA | 7 cut(s) | 296, 1271, 1472, 1673, 1728, 1877, 2081 |
| Hpy166II | GTNNAC | 3 cut(s) | 679, 1003, 2355 |
| Hpy188I | TCNGA | 8 cut(s) | 85, 628, 673, 1306, 1546, 1750, 2368, 2377 |
| Hpy188III | TCNNGA | 6 cut(s) | 185, 482, 689, 974, 1100, 1151 |
| Hpy8I | GTNNAC | 3 cut(s) | 679, 1003, 2355 |
| HpyCH4III | ACNGT | 7 cut(s) | 255, 727, 834, 880, 1000, 1048, 2352 |
| HpyCH4V | TGCA | 7 cut(s) | 121, 236, 405, 544, 661, 902, 1032 |
| HpyF3I | CTNAG | 5 cut(s) | 625, 1334, 1943, 2147, 2367 |
| Hsp92I | GRCGYC | 1 cut(s) | 778 |
| HspAI | GCGC | 2 cut(s) | 778, 2334 |
| KasI | GGCGCC | 1 cut(s) | 777 |
| Ksp22I | TGATCA | 1 cut(s) | 1096 |
| Kzo9I | GATC | 5 cut(s) | 126, 487, 1096, 2204, 2252 |
| Lsp1109I | GCAGC | 2 cut(s) | 60, 1004 |
| LweI | GCATC | 5 cut(s) | 1367, 1568, 1772, 1976, 2180 |
| MaeI | CTAG | 7 cut(s) | 32, 45, 273, 962, 1340, 1949, 2153 |
| MaeIII | GTNAC | 5 cut(s) | 34, 142, 155, 228, 284 |
| MalI | GATC | 5 cut(s) | 128, 489, 1098, 2206, 2254 |
| MboI | GATC | 5 cut(s) | 126, 487, 1096, 2204, 2252 |
| MflI | RGATCY | 2 cut(s) | 126, 2204 |
| Mly113I | GGCGCC | 1 cut(s) | 778 |
| MlyI | GAGTC | 2 cut(s) | 217, 2248 |
| MmeI | TCCRAC | 1 cut(s) | 346 |
| MnlI | CCTC | 9 cut(s) | 181, 288, 435, 622, 692, 795, 1096, 1264, 2362 |
| Mph1103I | ATGCAT | 2 cut(s) | 546, 1034 |
| MroXI | GAANNNNTTC | 5 cut(s) | 167, 1475, 1679, 1883, 2087 |
| MseI | TTAA | 5 cut(s) | 648, 717, 755, 2292, 2316 |
| MslI | CAYNNNNRTG | 6 cut(s) | 140, 1373, 1574, 1778, 1982, 2186 |
| MspA1I | CMGCKG | 1 cut(s) | 1017 |
| MspCI | CTTAAG | 1 cut(s) | 2291 |
| MspI | CCGG | 1 cut(s) | 1067 |
| MspR9I | CCNGG | 2 cut(s) | 282, 893 |
| Mva1269I | GAATGC | 1 cut(s) | 904 |
| MvaI | CCWGG | 2 cut(s) | 282, 893 |
| NarI | GGCGCC | 1 cut(s) | 778 |
| NdeI | CATATG | 1 cut(s) | 1171 |
| NdeII | GATC | 5 cut(s) | 126, 487, 1096, 2204, 2252 |
| NlaIV | GGNNCC | 2 cut(s) | 128, 779 |
| NmuCI | GTSAC | 3 cut(s) | 142, 228, 284 |
| NsiI | ATGCAT | 2 cut(s) | 546, 1034 |
| NspI | RCATGY | 1 cut(s) | 236 |
| NspV | TTCGAA | 4 cut(s) | 512, 1412, 1613, 1817 |
| OliI | CACNNNNGTG | 1 cut(s) | 140 |
| PagI | TCATGA | 2 cut(s) | 688, 1099 |
| PceI | AGGCCT | 1 cut(s) | 424 |
| PctI | GAATGC | 1 cut(s) | 904 |
| PdmI | GAANNNNTTC | 5 cut(s) | 167, 1475, 1679, 1883, 2087 |
| PfeI | GAWTC | 5 cut(s) | 334, 730, 865, 2192, 2296 |
| PflFI | GACNNNGTC | 1 cut(s) | 226 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 365 |
| PfoI | TCCNGGA | 1 cut(s) | 891 |
| PkrI | GCNGC | 2 cut(s) | 50, 1019 |
| PleI | GAGTC | 2 cut(s) | 217, 2247 |
| PluTI | GGCGCC | 1 cut(s) | 781 |
| PpsI | GAGTC | 2 cut(s) | 217, 2247 |
| Psp6I | CCWGG | 2 cut(s) | 280, 891 |
| PspGI | CCWGG | 2 cut(s) | 280, 891 |
| PspN4I | GGNNCC | 2 cut(s) | 128, 779 |
| PspPI | GGNCC | 1 cut(s) | 344 |
| PstNI | CAGNNNCTG | 1 cut(s) | 326 |
| PsuI | RGATCY | 2 cut(s) | 126, 2204 |
| PsyI | GACNNNGTC | 1 cut(s) | 226 |
| RseI | CAYNNNNRTG | 6 cut(s) | 140, 1373, 1574, 1778, 1982, 2186 |
| SaqAI | TTAA | 5 cut(s) | 648, 717, 755, 2292, 2316 |
| SatI | GCNGC | 2 cut(s) | 49, 1018 |
| Sau3AI | GATC | 5 cut(s) | 126, 487, 1096, 2204, 2252 |
| Sau96I | GGNCC | 1 cut(s) | 344 |
| SchI | GAGTC | 2 cut(s) | 217, 2248 |
| ScrFI | CCNGG | 2 cut(s) | 282, 893 |
| SfaNI | GCATC | 5 cut(s) | 1367, 1568, 1772, 1976, 2180 |
| SfcI | CTRYAG | 2 cut(s) | 804, 1089 |
| SfoI | GGCGCC | 1 cut(s) | 779 |
| SfuI | TTCGAA | 4 cut(s) | 512, 1412, 1613, 1817 |
| SinI | GGWCC | 1 cut(s) | 344 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 140, 1373, 1574, 1778, 1982, 2186 |
| SmlI | CTYRAG | 2 cut(s) | 185, 2291 |
| SmoI | CTYRAG | 2 cut(s) | 185, 2291 |
| SpeI | ACTAGT | 1 cut(s) | 31 |
| SseBI | AGGCCT | 1 cut(s) | 424 |
| SsiI | CCGC | 2 cut(s) | 1015, 2208 |
| SspDI | GGCGCC | 1 cut(s) | 777 |
| SspI | AATATT | 1 cut(s) | 266 |
| SspMI | CTAG | 7 cut(s) | 32, 45, 273, 962, 1340, 1949, 2153 |
| StuI | AGGCCT | 1 cut(s) | 424 |
| StyD4I | CCNGG | 2 cut(s) | 280, 891 |
| StyI | CCWWGG | 2 cut(s) | 428, 2329 |
| TaaI | ACNGT | 7 cut(s) | 255, 727, 834, 880, 1000, 1048, 2352 |
| TaqII | GACCGA | 1 cut(s) | 361 |
| TfiI | GAWTC | 5 cut(s) | 334, 730, 865, 2192, 2296 |
| Tru1I | TTAA | 5 cut(s) | 648, 717, 755, 2292, 2316 |
| Tru9I | TTAA | 5 cut(s) | 648, 717, 755, 2292, 2316 |
| TscAI | CASTG | 8 cut(s) | 730, 1005, 1375, 1576, 1780, 1984, 2188, 2239 |
| TseFI | GTSAC | 3 cut(s) | 142, 228, 284 |
| TseI | GCWGC | 2 cut(s) | 48, 1017 |
| Tsp45I | GTSAC | 3 cut(s) | 142, 228, 284 |
| TspGWI | ACGGA | 1 cut(s) | 593 |
| TspRI | CASTG | 8 cut(s) | 730, 1005, 1375, 1576, 1780, 1984, 2188, 2239 |
| Tth111I | GACNNNGTC | 1 cut(s) | 226 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 365 |
| Vha464I | CTTAAG | 1 cut(s) | 2291 |
| VpaK11BI | GGWCC | 1 cut(s) | 344 |
| XapI | RAATTY | 2 cut(s) | 476, 991 |
| XceI | RCATGY | 1 cut(s) | 236 |
| XmnI | GAANNNNTTC | 5 cut(s) | 167, 1475, 1679, 1883, 2087 |
| XspI | CTAG | 7 cut(s) | 32, 45, 273, 962, 1340, 1949, 2153 |
| Zsp2I | ATGCAT | 2 cut(s) | 546, 1034 |