RchiOBHm_Chr3g0488001

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000279
Physical Location & Seq
Forward (+)
35488047 .. 35489530
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45241

Sequence Viewer

Length: 861 bp
ATGAGCCACATCTTCCGCTCACAGATTGAGGTAAGCTTATTTGGACAAAATTTATTATTCCTAGAATCTCTCTTCATGTGTGAAGGGTCTTACGGGGTCGGGTGTTGTCAGAGGACTTGTTGCAGCGTCGTGGTATTTGTTTGGCTTCTCGCTGTATTCCTAGTTCCGTTGATGCGGAGATCATGTCGGTTATTCAGGCAAATGAGCTTGCTTGGGTTAGGGAGTGGAAGCACATTTGGCTTGAGGTTGATTCAGCTATGGTACTTAATTTCCTTCGTGCTCCCCATCTTGTTCCATGGAGGTTCCGTGTTGCTTGGGATAATTGTTTGCACCGTATCTCACAAATGCAATTTAAATCTTCTCATATTTTTAGAGAGGGAAATCAGGTGGCAGATGCGCTTGCTAATGTTGGTTTGTCATCGTCAGGCTTGGTGTGGTGGAATGAGGCTCCTCCTTTTCTTCTGGATCTTTGTCGACGAGACTCACTTGGTTGGAGATATTATTGCCTTGACAAATGTTAGACCAAAATGCATTGATGATTTGAACAGGCCTCCAAGGTTCTATCTAATCGCTTATGTTGGTAAAGCAAATGATATTGATGAATTTCCTGATGATCTCCGGATTCTCCCGTTCAAAATACTATCATCGAAGCCTATCAACTATGGAGAACCAGACATGCATAAGAGCAAGAGAGAAACACTTTTTGCTGTCTATCTTTTGAACTTGACAACAAATCTCCGTGTATGGAAGGCTTTGAACTCAGAAGAGGAAAATACAAATATCATTAGCAAAGTTCTGCAACCCAAGTCAGATGTATATATTTATATGGAGGCTCATCTAAAAATTTCCCTCGACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

286

Amino Acids

33.03

Weight (kDa)

8.63

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 163 - 254 1.7e-12 Domain of unknown function (DUF6469)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 474
AccIII TCCGGA 1 cut(s) 618
AciI CCGC 2 cut(s) 16, 175
AclWI GGATC 1 cut(s) 473
AcsI RAATTY 3 cut(s) 49, 602, 843
AfaI GTAC 1 cut(s) 263
AgsI TTSAA 4 cut(s) 544, 634, 721, 757
AluBI AGCT 3 cut(s) 36, 207, 256
AluI AGCT 3 cut(s) 36, 207, 256
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 1 cut(s) 473
Aor13HI TCCGGA 1 cut(s) 618
AoxI GGCC 1 cut(s) 548
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 3 cut(s) 49, 602, 843
AspLEI GCGC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 135
BccI CCATC 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 2 cut(s) 62, 161
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 304, 449
BmsI GCATC 2 cut(s) 162, 384
BpuEI CTTGAG 1 cut(s) 262
BsaJI CCNNGG 2 cut(s) 295, 554
BsaWI WCCGGW 1 cut(s) 618
BsaXI ACNNNNNCTCC 4 cut(s) 169, 199, 291, 321
BseAI TCCGGA 1 cut(s) 618
BseDI CCNNGG 2 cut(s) 295, 554
BseMII CTCAG 1 cut(s) 774
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 1 cut(s) 135
BshFI GGCC 1 cut(s) 550
BsiHKAI GWGCWC 1 cut(s) 282
BsiSI CCGG 1 cut(s) 619
BsmAI GTCTC 1 cut(s) 473
BsnI GGCC 1 cut(s) 550
Bsp1286I GDGCHC 1 cut(s) 282
Bsp13I TCCGGA 1 cut(s) 618
Bsp143I GATC 3 cut(s) 179, 465, 613
Bsp19I CCATGG 1 cut(s) 295
BspACI CCGC 2 cut(s) 16, 175
BspANI GGCC 1 cut(s) 550
BspCNI CTCAG 1 cut(s) 773
BspEI TCCGGA 1 cut(s) 618
BspLI GGNNCC 2 cut(s) 304, 449
BspPI GGATC 1 cut(s) 473
BsrBI CCGCTC 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 295, 554
BssMI GATC 3 cut(s) 179, 465, 613
BssT1I CCWWGG 2 cut(s) 295, 554
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 2 cut(s) 77, 759
BstC8I GCNNGC 2 cut(s) 209, 401
BstDEI CTNAG 1 cut(s) 760
BstDSI CCRYGG 1 cut(s) 295
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 3 cut(s) 182, 468, 616
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 3 cut(s) 179, 465, 613
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 679
BstV1I GCAGC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 465
BstYI RGATCY 1 cut(s) 465
BsuRI GGCC 1 cut(s) 550
BtgI CCRYGG 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 209, 401
CfoI GCGC 1 cut(s) 399
CseI GACGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 262
CviAII CATG 4 cut(s) 76, 183, 296, 676
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 1 cut(s) 760
DpnI GATC 3 cut(s) 181, 467, 615
DpnII GATC 3 cut(s) 179, 465, 613
DraI TTTAAA 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 77, 759
EarI CTCTTC 2 cut(s) 77, 759
Eco130I CCWWGG 2 cut(s) 295, 554
Eco147I AGGCCT 1 cut(s) 550
EcoT14I CCWWGG 2 cut(s) 295, 554
EcoT22I ATGCAT 2 cut(s) 533, 681
ErhI CCWWGG 2 cut(s) 295, 554
FaeI CATG 4 cut(s) 79, 186, 299, 679
FatI CATG 4 cut(s) 75, 182, 295, 675
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 2 cut(s) 62, 161
GlaI GCGC 1 cut(s) 398
GluI GCNGC 1 cut(s) 124
HaeIII GGCC 1 cut(s) 550
HapII CCGG 1 cut(s) 619
HgaI GACGC 1 cut(s) 115
HhaI GCGC 1 cut(s) 399
Hin1II CATG 4 cut(s) 79, 186, 299, 679
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 4 cut(s) 65, 250, 481, 622
HpaII CCGG 1 cut(s) 619
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 3 cut(s) 111, 763, 811
Hpy188III TCNNGA 3 cut(s) 463, 608, 619
Hpy8I GTNNAC 1 cut(s) 475
Hpy99I CGWCG 2 cut(s) 131, 479
HpyAV CCTTC 3 cut(s) 77, 283, 742
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 6 cut(s) 123, 330, 348, 531, 679, 799
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 760
Hsp92II CATG 4 cut(s) 79, 186, 299, 679
HspAI GCGC 1 cut(s) 397
Kpn2I TCCGGA 1 cut(s) 618
Kzo9I GATC 3 cut(s) 179, 465, 613
LmnI GCTCC 2 cut(s) 285, 453
LpnPI CCDG 8 cut(s) 181, 370, 410, 448, 532, 621, 632, 684
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 2 cut(s) 162, 384
MaeI CTAG 2 cut(s) 62, 161
MalI GATC 3 cut(s) 181, 467, 615
MbiI CCGCTC 1 cut(s) 18
MboI GATC 3 cut(s) 179, 465, 613
MboII GAAGA 5 cut(s) 4, 64, 350, 451, 776
MflI RGATCY 1 cut(s) 465
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 7 cut(s) 49, 267, 321, 349, 602, 843, 856
MlyI GAGTC 1 cut(s) 475
MmeI TCCRAC 1 cut(s) 472
Mph1103I ATGCAT 2 cut(s) 533, 681
MroI TCCGGA 1 cut(s) 618
MseI TTAA 3 cut(s) 266, 353, 859
MspI CCGG 1 cut(s) 619
MwoI GCNNNNNNNGC 1 cut(s) 237
NcoI CCATGG 1 cut(s) 295
NdeII GATC 3 cut(s) 179, 465, 613
NlaIII CATG 4 cut(s) 79, 186, 299, 679
NlaIV GGNNCC 2 cut(s) 304, 449
NsiI ATGCAT 2 cut(s) 533, 681
NspI RCATGY 1 cut(s) 679
PceI AGGCCT 1 cut(s) 550
PfeI GAWTC 3 cut(s) 65, 250, 622
PkrI GCNGC 1 cut(s) 125
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
PspN4I GGNNCC 2 cut(s) 304, 449
PsrI GAACNNNNNNTAC 2 cut(s) 147, 179
PsuI RGATCY 1 cut(s) 465
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SalI GTCGAC 1 cut(s) 473
SaqAI TTAA 3 cut(s) 266, 353, 859
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 3 cut(s) 179, 465, 613
SchI GAGTC 1 cut(s) 475
SduI GDGCHC 1 cut(s) 282
SetI ASST 8 cut(s) 33, 38, 209, 248, 258, 304, 389, 560
SfaNI GCATC 2 cut(s) 162, 384
SmiI ATTTAAAT 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 7 cut(s) 49, 267, 321, 349, 602, 843, 856
SseBI AGGCCT 1 cut(s) 550
SsiI CCGC 2 cut(s) 16, 175
SspMI CTAG 2 cut(s) 62, 161
StuI AGGCCT 1 cut(s) 550
StyI CCWWGG 2 cut(s) 295, 554
SwaI ATTTAAAT 1 cut(s) 354
TaaI ACNGT 1 cut(s) 334
TaqI TCGA 3 cut(s) 474, 647, 852
TasI AATT 7 cut(s) 49, 267, 321, 349, 602, 843, 856
TfiI GAWTC 3 cut(s) 65, 250, 622
Tru1I TTAA 3 cut(s) 266, 353, 859
Tru9I TTAA 3 cut(s) 266, 353, 859
TseI GCWGC 1 cut(s) 123
TspDTI ATGAA 2 cut(s) 64, 615
TspGWI ACGGA 3 cut(s) 156, 295, 728
XapI RAATTY 3 cut(s) 49, 602, 843
XceI RCATGY 1 cut(s) 679
XmiI GTMKAC 1 cut(s) 474
XspI CTAG 2 cut(s) 62, 161
Zsp2I ATGCAT 2 cut(s) 533, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.