Prupe.1G201900_v2.0.a1

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000279
Physical Location & Seq
Reverse (-)
20010019 .. 20020186
10168 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G201900.3

Sequence Viewer

Length: 3087 bp
ATGGATCATCAAGAGACTAGTGTGGAAAAGGAGGGAGTTGCTGACAGTGGCTTAATCGATTTGGTCTTCTCCTGGTCTATGGAGGATGTTCTCAACATAAATCTATACAAAAACCAGGTGACGGAAATTCCTGATACATTTTCGACTGTGAAGAGTTACATGAAAACGTTCATTCCTTCGCTTGTTGAGGAAACACATGCTGATTTACTCTCAAGCATGGAGACTCTGCCACAGGCACCTACTCGTGAAATTCTGGCTGTTACACCTAAGCGTCATAAAAATGCCAAGGACTTTTCTTATGTTATTATAATAAGGGGCAGTGGAGAAGCCGAAAATTATGAGCCGCAGACTGGAGATCTTATTGCCTTGACTGATATTAGACCAACATGCAGTGATCATTTGAACAGGCTGAGAGATTCATATCTCATTGCGTATGTTCGTCCAGGCAGAGATAATAGGCTCTTTATACGCTCATCAAAGCCTATAAGTAGAGGAGGAGGACGAAAACTTTTTGCTGTCTTTCTGATCAACATGACAACAAATGTTCGCATATGGAAAGCTTTGATCTCAGAAAAGGCAAACACAAATATAATTAAGAATGTGCTGCAAGTGCAACCCAATTCATCACAGGGTGGGAATTCTTGTTCAATTTGCTTTTCTAAGGAAAAATGCTCTGCTGCCGTTTCAAATAGATGGCCCTCAATGGGCTCTGATCTAAATGATTCCCAAGAAGCTACAGTTTTGAACTGTATCAATTTGAGTAAATGTACTCACCAAAATACCATCAAACTAATATGGGGTCCTCCTGGGACTGGAAAAACCAAGACAGTTGCTATGTCACTCCTTGCCCTCTCGAAGTTGAAGTGCAGAACACTAACATGTGCTCCAACGAATGTCGCCTTGTTAGAAGTGACAGCGAGACTCCTGGGATTGATTAATCAGTCTCTTGATTATGGAAAGTATGGACTTGGAGATATAATTCTATTTGGGAATGGGGAGCGAATGAAGATCGATAATTATGATGACCTTGTTGAGGTATTTCTTGATTATCGTATTGAAATTCTGGCCCAGTGTTTTAACCCTGGGACTGGATGGAAACATTGGTTGGAGTCAATGATAGGTTTGCTTGAGGATCCACAGCAAAAGTACTCAACAAGGGATGATGAGAATGATTTTCAGACCTTTGAGGAGTTTGTGAAGGAAAAACTTAATTCAGTCGGTGAGCATGTGGAGTTTTGCATGGTAAATTTGTACACTCACTTACCAACTTCTTGCATTTCACTAGAGGTTGTGACTGACATGATTGGAGCTCTGGATTTGCTCAATTCTCTTAAATCTTTACTGCGTGAGGTTGGTTTTGCTAATGAGAGGTCACAATTAGTTCTAAAAGATTTTCTTCGTAAACTGAGGTGGCTTCGTAAATTTTGTGTTCCTAATTTGAAAAATTTGGAGAAAATAAGGAAATTCTGCTTGGCAAATGCTTCCTTAATATTTTGCACCGTGTCAAGCTCTGCTAAATTGCAGACAGAGGAAAAGGCACCCCTGGATTTGTTAGTGATTGAGGAAGCTGCTCAGCTTAAAGAATGTGAATCAGCAATTCCTTTGCAACTACCGGGTCTTCGCCATGCTGTTCTCATAGGAGATGAGAGGCAACTCCCTGCTGTGGTTATAAGCAAGATCTCCGAGAAGGCTGGTTTTGGAAGAAGTTTGTTCGGAAGACTTCTACTGTTGGGACATGAGAGGCACCTTCTCAATGTCCAGTATAGAATGCATCCATCAATCAGCTTATTCCCAAAAAGGGAGTTTTACAACAACCAGATATTAGACGGTCCAAATGTCAAGCAAGGAAGCTATGAGAAGTGCTTTCTTTCGGGAAAAATGTACGGATGCTATTCCTTTATAGATGTAGCCAATGGACAAGAAGAATTTGATCGCGGCCATAGTCGGAAAAATATGGTTGAGGTTGCTGTGGTCTGTGAGATTGTTGCAAGCCTATACAGAGAATTTATTCGAACAAAAAAGAAGGTTAGTGTTGGGGTAATATCACCTTACAAAGCTCAAGTTAATGCAATTCAAGAGAGAGTCACAGAATACAGTGAAGTTTCTGGCACTGATGGATTCTCTGTAAGTGTGCAATCTGTTGATGGATTCCAAGGTGGTGAAGATGATGTGATAATTATCTCCACAGTCAGATGTAACGAGGAAGGATATGTTGGTTTCATTTCCAATCTTCAAAGAGCAAACGTGATGCTAACGCGTGCAAGGCACTGTCTTTGGATTTTGGGGAACGAAGCAACTTTGATTAGAAGTAACTCTATTTGGAAGAAGCTAATTCTTGACGCAAAGAAACGCAAATGTTTTTATAATGCTGATGAGGAAAAGAACTTGGCTCAGGCCATTGCAGTTGCCCTCATGGAGCTTGGCCAAGTTCATATTCCACTTAATTCTGACTCTCTGCTGTTCAAAAATGCCAAATGGAAGGTTTGCTTCACCAATGAATTTCAGAATTCCATACAAAAGATTAAGGACACTGAGATCCATCGGGAAGTGGTTTCCTTATTAACAAAGCTCGCCAATGGTTGGCGCCAATCTCGCAAGAATAAAAGAACTATAGGCCATGGGACTTGTGCTCAAGTGTTACAGAAGTACAAAGTTAAAGGGCTGCTGAATCTCATTTGGTCTGTAGATGTTCTCCAGGAGAATTCAGATTATGTCCAGGTTTTGAAGATTTGGGATGTTCTTCCAGTTTCTGATACTCCCGAACTTGATAAGCGGCTTGAGAACATGTTTCGTAGCTATACAACCGCTCAGATGAACCTTTGCCTGCTCAGATGTGTTGATGGAGACGCAGTTGTCCCAATTAGAATGCCGGTGGATTTGAGCAGCTCCCATGAGGCTGAGGCTGATCCTGTGCAGGTTCTTTCAAAACCATTATCTTCACTCAGTCTAAAAGATGAGCCCCAAACATCAAGCAGTGAACCACAGAGTCATAGGATATTCTCACCAAGGAGATCATTGGGCGTGGTACTAAATGAGGGGGGCTGTACTATGTGGATGGCTTCAGTATGGGACGTGCCAATAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

1029

Amino Acids

115.65

Weight (kDa)

7.86

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 308, 1670, 2364
AasI GACNNNNNNGTC 1 cut(s) 2852
Acc36I ACCTGC 1 cut(s) 2905
AccB1I GGYRCC 4 cut(s) 235, 1537, 1743, 2583
AccB7I CCANNNNNTGG 1 cut(s) 2580
AccBSI CCGCTC 1 cut(s) 2807
AccII CGCG 2 cut(s) 1935, 2257
AciI CCGC 4 cut(s) 344, 1935, 2773, 2805
AclI AACGTT 1 cut(s) 167
AclWI GGATC 5 cut(s) 12, 1127, 1140, 2530, 2900
AcoI YGGCCR 2 cut(s) 1936, 2422
AcuI CTGAAG 1 cut(s) 3045
AcyI GRCGYC 1 cut(s) 2584
AdeI CACNNNGTG 1 cut(s) 632
AfaI GTAC 7 cut(s) 769, 1148, 1253, 1883, 2648, 3027, 3046
AfiI CCNNNNNNNGG 9 cut(s) 121, 350, 704, 812, 1033, 1088, 1663, 1798, 2580
AflIII ACRYGT 3 cut(s) 878, 2255, 2784
AhlI ACTAGT 1 cut(s) 17
AjiI CACGTC 1 cut(s) 3073
AjnI CCWGG 9 cut(s) 71, 114, 442, 805, 924, 1081, 1542, 2694, 2715
AjuI GAANNNNNNNTTGG 8 cut(s) 1088, 1120, 1454, 1486, 2196, 2228, 2418, 2450
AloI GAACNNNNNNTCC 2 cut(s) 628, 660
Alw21I GWGCWC 3 cut(s) 886, 1312, 2632
Alw26I GTCTC 5 cut(s) 8, 215, 913, 948, 2838
AlwI GGATC 5 cut(s) 12, 1127, 1140, 2530, 2900
AlwNI CAGNNNCTG 1 cut(s) 2750
AoxI GGCC 6 cut(s) 695, 1065, 1936, 2394, 2422, 2614
ApeKI GCWGC 5 cut(s) 604, 677, 1568, 2662, 2883
AseI ATTAAT 1 cut(s) 936
Asp700I GAANNNNTTC 2 cut(s) 167, 2007
AspLEI GCGC 1 cut(s) 2586
AspS9I GGNCC 4 cut(s) 696, 800, 1066, 1829
AsuC2I CCSGG 1 cut(s) 1614
AsuHPI GGTGA 7 cut(s) 130, 764, 1232, 2037, 2171, 2482, 2994
AsuII TTCGAA 1 cut(s) 2011
AvaII GGWCC 2 cut(s) 800, 1829
BalI TGGCCA 1 cut(s) 2424
BamHI GGATCC 1 cut(s) 1132
BanI GGYRCC 4 cut(s) 235, 1537, 1743, 2583
BanII GRGCYC 3 cut(s) 710, 1312, 2961
BauI CACGAG 1 cut(s) 243
BbsI GAAGAC 3 cut(s) 58, 1610, 1723
Bbv12I GWGCWC 3 cut(s) 886, 1312, 2632
BbvCI CCTCAGC 1 cut(s) 2898
BbvI GCAGC 5 cut(s) 591, 664, 1555, 2649, 2895
BccI CCATC 9 cut(s) 687, 791, 1086, 1783, 2108, 2138, 2547, 2834, 3049
BceAI ACGGC 1 cut(s) 665
BciT130I CCWGG 9 cut(s) 73, 116, 444, 807, 926, 1083, 1544, 2696, 2717
BclI TGATCA 2 cut(s) 394, 525
BcnI CCSGG 1 cut(s) 1614
BcoDI GTCTC 5 cut(s) 8, 215, 913, 948, 2838
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 2 cut(s) 18, 1283
BfmI CTRYAG 3 cut(s) 735, 2610, 2682
BfoI RGCGCY 1 cut(s) 2587
BfuAI ACCTGC 1 cut(s) 2905
BglII AGATCT 2 cut(s) 355, 1677
BisI GCNGC 8 cut(s) 344, 605, 678, 1569, 1936, 2663, 2774, 2884
BlpI GCTNAGC 1 cut(s) 1572
BlsI GCNGC 8 cut(s) 345, 606, 679, 1570, 1937, 2664, 2775, 2885
BmcAI AGTACT 1 cut(s) 1148
Bme18I GGWCC 2 cut(s) 800, 1829
BmgBI CACGTC 1 cut(s) 3073
BmgT120I GGNCC 4 cut(s) 696, 800, 1066, 1829
BmiI GGNNCC 6 cut(s) 237, 801, 1134, 1539, 1745, 2585
BmrI ACTGGG 1 cut(s) 1063
BmsI GCATC 3 cut(s) 1780, 1877, 2238
BmuI ACTGGG 1 cut(s) 1063
BpiI GAAGAC 3 cut(s) 58, 1610, 1723
BpmI CTGGAG 2 cut(s) 372, 2678
Bpu10I CCTNAGC 3 cut(s) 267, 2391, 2898
Bpu1102I GCTNAGC 1 cut(s) 1572
Bpu14I TTCGAA 1 cut(s) 2011
BpuEI CTTGAG 5 cut(s) 196, 1148, 2043, 2616, 2798
BpuMI CCSGG 1 cut(s) 1614
Bsa29I ATCGAT 2 cut(s) 57, 1011
BsaBI GATNNNNATC 2 cut(s) 420, 2177
BsaHI GRCGYC 1 cut(s) 2584
BsaJI CCNNGG 9 cut(s) 285, 806, 925, 1081, 1082, 1542, 2152, 2617, 3005
BsaXI ACNNNNNCTCC 4 cut(s) 868, 898, 2835, 2865
Bsc4I CCNNNNNNNGG 9 cut(s) 121, 350, 704, 812, 1033, 1088, 1663, 1798, 2580
Bse118I RCCGGY 1 cut(s) 2869
Bse1I ACTGG 6 cut(s) 355, 817, 1069, 1093, 1759, 2744
Bse3DI GCAATG 2 cut(s) 426, 2397
Bse8I GATNNNNATC 2 cut(s) 420, 2177
BseBI CCWGG 9 cut(s) 73, 116, 444, 807, 926, 1083, 1544, 2696, 2717
BseCI ATCGAT 2 cut(s) 57, 1011
BseDI CCNNGG 9 cut(s) 285, 806, 925, 1081, 1082, 1542, 2152, 2617, 3005
BseGI GGATG 7 cut(s) 91, 1097, 1165, 1771, 1892, 2740, 3060
BseJI GATNNNNATC 2 cut(s) 420, 2177
BseLI CCNNNNNNNGG 9 cut(s) 121, 350, 704, 812, 1033, 1088, 1663, 1798, 2580
BseMI GCAATG 2 cut(s) 426, 2397
BseNI ACTGG 6 cut(s) 355, 817, 1069, 1093, 1759, 2744
BseRI GAGGAG 3 cut(s) 507, 510, 1202
BseXI GCAGC 5 cut(s) 591, 664, 1555, 2649, 2895
BsgI GTGCAG 2 cut(s) 886, 2933
Bsh1236I CGCG 2 cut(s) 1935, 2257
BshFI GGCC 6 cut(s) 697, 1067, 1938, 2396, 2424, 2616
BshNI GGYRCC 4 cut(s) 235, 1537, 1743, 2583
BshVI ATCGAT 2 cut(s) 57, 1011
BsiHKAI GWGCWC 3 cut(s) 886, 1312, 2632
BsiSI CCGG 2 cut(s) 1613, 2870
BslFI GGGAC 6 cut(s) 823, 1099, 1746, 2635, 2840, 3083
BslI CCNNNNNNNGG 9 cut(s) 121, 350, 704, 812, 1033, 1088, 1663, 1798, 2580
BsmAI GTCTC 5 cut(s) 8, 215, 913, 948, 2838
BsmBI CGTCTC 1 cut(s) 2838
BsmFI GGGAC 6 cut(s) 823, 1099, 1746, 2635, 2840, 3083
BsmI GAATGC 2 cut(s) 1773, 2871
BsnI GGCC 6 cut(s) 697, 1067, 1938, 2396, 2424, 2616
Bsp119I TTCGAA 1 cut(s) 2011
Bsp1286I GDGCHC 5 cut(s) 710, 886, 1312, 2632, 2961
Bsp1407I TGTACA 1 cut(s) 1251
Bsp1720I GCTNAGC 1 cut(s) 1572
Bsp19I CCATGG 1 cut(s) 2617
BspACI CCGC 4 cut(s) 344, 1935, 2773, 2805
BspANI GGCC 6 cut(s) 697, 1067, 1938, 2396, 2424, 2616
BspDI ATCGAT 2 cut(s) 57, 1011
BspFNI CGCG 2 cut(s) 1935, 2257
BspLI GGNNCC 6 cut(s) 237, 801, 1134, 1539, 1745, 2585
BspMI ACCTGC 1 cut(s) 2905
BspPI GGATC 5 cut(s) 12, 1127, 1140, 2530, 2900
BspT104I TTCGAA 1 cut(s) 2011
BspT107I GGYRCC 4 cut(s) 235, 1537, 1743, 2583
BsrBI CCGCTC 1 cut(s) 2807
BsrDI GCAATG 2 cut(s) 426, 2397
BsrFI RCCGGY 1 cut(s) 2869
BsrGI TGTACA 1 cut(s) 1251
BsrI ACTGG 6 cut(s) 355, 817, 1069, 1093, 1759, 2744
BssAI RCCGGY 1 cut(s) 2869
BssECI CCNNGG 9 cut(s) 285, 806, 925, 1081, 1082, 1542, 2152, 2617, 3005
BssNI GRCGYC 1 cut(s) 2584
BssSI CACGAG 1 cut(s) 243
BssT1I CCWWGG 4 cut(s) 285, 2152, 2617, 3005
Bst2BI CACGAG 1 cut(s) 243
Bst2UI CCWGG 9 cut(s) 73, 116, 444, 807, 926, 1083, 1544, 2696, 2717
Bst6I CTCTTC 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 2584
BstAUI TGTACA 1 cut(s) 1251
BstBI TTCGAA 1 cut(s) 2011
BstC8I GCNNGC 4 cut(s) 1990, 2259, 2571, 2825
BstDSI CCRYGG 1 cut(s) 2617
BstENI CCTNNNNNAGG 1 cut(s) 1031
BstF5I GGATG 7 cut(s) 91, 1097, 1165, 1771, 1892, 2740, 3060
BstFNI CGCG 2 cut(s) 1935, 2257
BstH2I RGCGCY 1 cut(s) 2587
BstHHI GCGC 1 cut(s) 2586
BstMAI GTCTC 5 cut(s) 8, 215, 913, 948, 2838
BstMWI GCNNNNNNNGC 3 cut(s) 610, 2263, 2592
BstNI CCWGG 9 cut(s) 73, 116, 444, 807, 926, 1083, 1544, 2696, 2717
BstNSI RCATGY 5 cut(s) 200, 390, 882, 1229, 2788
BstSFI CTRYAG 3 cut(s) 735, 2610, 2682
BstUI CGCG 2 cut(s) 1935, 2257
BstV1I GCAGC 5 cut(s) 591, 664, 1555, 2649, 2895
BstV2I GAAGAC 3 cut(s) 58, 1610, 1723
BstX2I RGATCY 4 cut(s) 355, 1132, 1677, 2535
BstYI RGATCY 4 cut(s) 355, 1132, 1677, 2535
Bsu15I ATCGAT 2 cut(s) 57, 1011
BsuRI GGCC 6 cut(s) 697, 1067, 1938, 2396, 2424, 2616
BsuTUI ATCGAT 2 cut(s) 57, 1011
BtgI CCRYGG 1 cut(s) 2617
BtrI CACGTC 1 cut(s) 3073
BtsCI GGATG 7 cut(s) 91, 1097, 1165, 1771, 1892, 2740, 3060
BtsI GCAGTG 3 cut(s) 325, 397, 2980
BtsIMutI CAGTG 9 cut(s) 52, 325, 397, 1076, 2101, 2109, 2266, 2529, 2980
BveI ACCTGC 1 cut(s) 2905
Cac8I GCNNGC 4 cut(s) 1990, 2259, 2571, 2825
CaiI CAGNNNCTG 1 cut(s) 2750
CfoI GCGC 1 cut(s) 2586
Cfr10I RCCGGY 1 cut(s) 2869
Cfr13I GGNCC 4 cut(s) 696, 800, 1066, 1829
ClaI ATCGAT 2 cut(s) 57, 1011
CseI GACGC 3 cut(s) 260, 2348, 2855
CsiI ACCWGGT 1 cut(s) 114
Csp6I GTAC 7 cut(s) 768, 1147, 1252, 1882, 2647, 3026, 3045
CviQI GTAC 7 cut(s) 768, 1147, 1252, 1882, 2647, 3026, 3045
DinI GGCGCC 1 cut(s) 2585
DraIII CACNNNGTG 1 cut(s) 632
DrdI GACNNNNNNGTC 1 cut(s) 2852
DseDI GACNNNNNNGTC 1 cut(s) 2852
EaeI YGGCCR 2 cut(s) 1936, 2422
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Ecl136II GAGCTC 1 cut(s) 1310
Eco130I CCWWGG 4 cut(s) 285, 2152, 2617, 3005
Eco24I GRGCYC 3 cut(s) 710, 1312, 2961
Eco47I GGWCC 2 cut(s) 800, 1829
Eco53kI GAGCTC 1 cut(s) 1310
Eco57I CTGAAG 1 cut(s) 3045
EcoICRI GAGCTC 1 cut(s) 1310
EcoNI CCTNNNNNAGG 1 cut(s) 1031
EcoO109I RGGNCCY 1 cut(s) 800
EcoRI GAATTC 3 cut(s) 637, 2506, 2701
EcoRII CCWGG 9 cut(s) 71, 114, 442, 805, 924, 1081, 1542, 2694, 2715
EcoT14I CCWWGG 4 cut(s) 285, 2152, 2617, 3005
EcoT22I ATGCAT 1 cut(s) 1773
EcoT38I GRGCYC 3 cut(s) 710, 1312, 2961
EgeI GGCGCC 1 cut(s) 2585
EheI GGCGCC 1 cut(s) 2585
ErhI CCWWGG 4 cut(s) 285, 2152, 2617, 3005
Esp3I CGTCTC 1 cut(s) 2838
FalI AAGNNNNNCTT 4 cut(s) 1380, 1412, 2471, 2503
FaqI GGGAC 6 cut(s) 823, 1099, 1746, 2635, 2840, 3083
FauNDI CATATG 1 cut(s) 551
FbaI TGATCA 2 cut(s) 394, 525
Fnu4HI GCNGC 8 cut(s) 344, 605, 678, 1569, 1936, 2663, 2774, 2884
FokI GGATG 7 cut(s) 98, 1104, 1172, 1758, 1899, 2747, 3067
FriOI GRGCYC 3 cut(s) 710, 1312, 2961
Fsp4HI GCNGC 8 cut(s) 344, 605, 678, 1569, 1936, 2663, 2774, 2884
FspBI CTAG 2 cut(s) 18, 1283
GlaI GCGC 1 cut(s) 2585
GluI GCNGC 8 cut(s) 344, 605, 678, 1569, 1936, 2663, 2774, 2884
GsuI CTGGAG 2 cut(s) 372, 2678
HaeII RGCGCY 1 cut(s) 2587
HaeIII GGCC 6 cut(s) 697, 1067, 1938, 2396, 2424, 2616
HapII CCGG 2 cut(s) 1613, 2870
HgaI GACGC 3 cut(s) 260, 2348, 2855
HhaI GCGC 1 cut(s) 2586
Hin1I GRCGYC 1 cut(s) 2584
Hin6I GCGC 1 cut(s) 2584
HinP1I GCGC 1 cut(s) 2584
HindIII AAGCTT 1 cut(s) 558
HpaII CCGG 2 cut(s) 1613, 2870
HphI GGTGA 7 cut(s) 130, 764, 1232, 2037, 2171, 2482, 2994
Hpy166II GTNNAC 3 cut(s) 1254, 1403, 2978
Hpy8I GTNNAC 3 cut(s) 1254, 1403, 2978
HpyAV CCTTC 7 cut(s) 186, 1192, 1681, 1757, 2017, 2198, 2473
HpyCH4IV ACGT 3 cut(s) 167, 2244, 3072
HpyF10VI GCNNNNNNNGC 3 cut(s) 610, 2263, 2592
HpySE526I ACGT 3 cut(s) 167, 2244, 3072
Hsp92I GRCGYC 1 cut(s) 2584
HspAI GCGC 1 cut(s) 2584
KasI GGCGCC 1 cut(s) 2583
Ksp22I TGATCA 2 cut(s) 394, 525
LmnI GCTCC 5 cut(s) 889, 997, 1307, 2416, 2891
Lsp1109I GCAGC 5 cut(s) 591, 664, 1555, 2649, 2895
LweI GCATC 3 cut(s) 1780, 1877, 2238
MabI ACCWGGT 1 cut(s) 114
MaeI CTAG 2 cut(s) 18, 1283
MaeII ACGT 3 cut(s) 167, 2244, 3072
MbiI CCGCTC 1 cut(s) 2807
MflI RGATCY 4 cut(s) 355, 1132, 1677, 2535
MhlI GDGCHC 5 cut(s) 710, 886, 1312, 2632, 2961
MlsI TGGCCA 1 cut(s) 2424
MluI ACGCGT 1 cut(s) 2255
MluNI TGGCCA 1 cut(s) 2424
Mly113I GGCGCC 1 cut(s) 2584
MlyI GAGTC 6 cut(s) 217, 915, 1118, 2091, 2444, 2995
MmeI TCCRAC 3 cut(s) 911, 1086, 1925
Mox20I TGGCCA 1 cut(s) 2424
Mph1103I ATGCAT 1 cut(s) 1773
MroXI GAANNNNTTC 2 cut(s) 167, 2007
MscI TGGCCA 1 cut(s) 2424
MslI CAYNNNNRTG 2 cut(s) 279, 877
Msp20I TGGCCA 1 cut(s) 2424
MspI CCGG 2 cut(s) 1613, 2870
Mva1269I GAATGC 2 cut(s) 1773, 2871
MvaI CCWGG 9 cut(s) 73, 116, 444, 807, 926, 1083, 1544, 2696, 2717
MvnI CGCG 2 cut(s) 1935, 2257
MwoI GCNNNNNNNGC 3 cut(s) 610, 2263, 2592
NarI GGCGCC 1 cut(s) 2584
NciI CCSGG 1 cut(s) 1614
NcoI CCATGG 1 cut(s) 2617
NdeI CATATG 1 cut(s) 551
NlaIV GGNNCC 6 cut(s) 237, 801, 1134, 1539, 1745, 2585
NmuCI GTSAC 6 cut(s) 118, 837, 910, 1291, 1371, 2083
NsiI ATGCAT 1 cut(s) 1773
NspI RCATGY 5 cut(s) 200, 390, 882, 1229, 2788
NspV TTCGAA 1 cut(s) 2011
PasI CCCWGGG 1 cut(s) 1082
PciI ACATGT 2 cut(s) 878, 2784
PctI GAATGC 2 cut(s) 1773, 2871
PdmI GAANNNNTTC 2 cut(s) 167, 2007
PfeI GAWTC 6 cut(s) 416, 722, 1589, 2118, 2148, 2668
PflMI CCANNNNNTGG 1 cut(s) 2580
PfoI TCCNGGA 1 cut(s) 2694
PkrI GCNGC 8 cut(s) 345, 606, 679, 1570, 1937, 2664, 2775, 2885
PleI GAGTC 6 cut(s) 217, 915, 1117, 2090, 2444, 2994
PluTI GGCGCC 1 cut(s) 2587
PpsI GAGTC 6 cut(s) 217, 915, 1117, 2090, 2444, 2994
PpuMI RGGWCCY 1 cut(s) 800
PscI ACATGT 2 cut(s) 878, 2784
PshBI ATTAAT 1 cut(s) 936
PsiI TTATAA 3 cut(s) 308, 1670, 2364
Psp124BI GAGCTC 1 cut(s) 1312
Psp1406I AACGTT 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 800
Psp6I CCWGG 9 cut(s) 71, 114, 442, 805, 924, 1081, 1542, 2694, 2715
PspGI CCWGG 9 cut(s) 71, 114, 442, 805, 924, 1081, 1542, 2694, 2715
PspN4I GGNNCC 6 cut(s) 237, 801, 1134, 1539, 1745, 2585
PspPI GGNCC 4 cut(s) 696, 800, 1066, 1829
PspPPI RGGWCCY 1 cut(s) 800
PstNI CAGNNNCTG 1 cut(s) 2750
PsuI RGATCY 4 cut(s) 355, 1132, 1677, 2535
RsaI GTAC 7 cut(s) 769, 1148, 1253, 1883, 2648, 3027, 3046
RsaNI GTAC 7 cut(s) 768, 1147, 1252, 1882, 2647, 3026, 3045
RseI CAYNNNNRTG 2 cut(s) 279, 877
SacI GAGCTC 1 cut(s) 1312
SatI GCNGC 8 cut(s) 344, 605, 678, 1569, 1936, 2663, 2774, 2884
Sau96I GGNCC 4 cut(s) 696, 800, 1066, 1829
ScaI AGTACT 1 cut(s) 1148
SchI GAGTC 6 cut(s) 217, 915, 1118, 2091, 2444, 2995
SduI GDGCHC 5 cut(s) 710, 886, 1312, 2632, 2961
SexAI ACCWGGT 1 cut(s) 114
SfaNI GCATC 3 cut(s) 1780, 1877, 2238
SfcI CTRYAG 3 cut(s) 735, 2610, 2682
SfoI GGCGCC 1 cut(s) 2585
SfuI TTCGAA 1 cut(s) 2011
SinI GGWCC 2 cut(s) 800, 1829
SmiMI CAYNNNNRTG 2 cut(s) 279, 877
SmlI CTYRAG 5 cut(s) 211, 1127, 2058, 2631, 2777
SmoI CTYRAG 5 cut(s) 211, 1127, 2058, 2631, 2777
SpeI ACTAGT 1 cut(s) 17
SsiI CCGC 4 cut(s) 344, 1935, 2773, 2805
SspDI GGCGCC 1 cut(s) 2583
SspI AATATT 1 cut(s) 1491
SspMI CTAG 2 cut(s) 18, 1283
SstI GAGCTC 1 cut(s) 1312
StyI CCWWGG 4 cut(s) 285, 2152, 2617, 3005
TaiI ACGT 3 cut(s) 170, 2247, 3075
TaqI TCGA 5 cut(s) 57, 143, 854, 1011, 2011
TatI WGTACW 5 cut(s) 767, 1146, 1251, 2646, 3044
TauI GCSGC 3 cut(s) 346, 1938, 2776
TfiI GAWTC 6 cut(s) 416, 722, 1589, 2118, 2148, 2668
TscAI CASTG 9 cut(s) 52, 325, 397, 1076, 2101, 2116, 2273, 2536, 2980
TseFI GTSAC 6 cut(s) 118, 837, 910, 1291, 1371, 2083
TseI GCWGC 5 cut(s) 604, 677, 1568, 2662, 2883
Tsp45I GTSAC 6 cut(s) 118, 837, 910, 1291, 1371, 2083
TspDTI ATGAA 9 cut(s) 160, 176, 408, 612, 1019, 2209, 2420, 2511, 2828
TspGWI ACGGA 2 cut(s) 137, 1899
TspRI CASTG 9 cut(s) 52, 325, 397, 1076, 2101, 2116, 2273, 2536, 2980
Van91I CCANNNNNTGG 1 cut(s) 2580
VpaK11BI GGWCC 2 cut(s) 800, 1829
VspI ATTAAT 1 cut(s) 936
XagI CCTNNNNNAGG 1 cut(s) 1031
XceI RCATGY 5 cut(s) 200, 390, 882, 1229, 2788
XmnI GAANNNNTTC 2 cut(s) 167, 2007
XspI CTAG 2 cut(s) 18, 1283
ZrmI AGTACT 1 cut(s) 1148
Zsp2I ATGCAT 1 cut(s) 1773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.