AAA domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 720, 1143 |
| Acc36I | ACCTGC | 1 cut(s) | 1201 |
| AccB1I | GGYRCC | 2 cut(s) | 232, 2859 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 359, 886, 901, 1043 |
| AccII | CGCG | 1 cut(s) | 229 |
| AciI | CCGC | 2 cut(s) | 229, 2410 |
| AclI | AACGTT | 2 cut(s) | 1202, 3117 |
| AcoI | YGGCCR | 1 cut(s) | 3137 |
| AcuI | CTGAAG | 1 cut(s) | 1520 |
| AcvI | CACGTG | 1 cut(s) | 2534 |
| AcyI | GRCGYC | 1 cut(s) | 2860 |
| AdeI | CACNNNGTG | 2 cut(s) | 759, 1691 |
| AfaI | GTAC | 7 cut(s) | 594, 1232, 1523, 1771, 1796, 2371, 2526 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 228, 229, 359, 835, 886, 901, 988, 1043 |
| AflIII | ACRYGT | 2 cut(s) | 595, 2531 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2898 |
| AhlI | ACTAGT | 2 cut(s) | 1634, 1993 |
| AjnI | CCWGG | 2 cut(s) | 111, 1885 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1727, 1759 |
| Alw21I | GWGCWC | 2 cut(s) | 1172, 1292 |
| Alw26I | GTCTC | 6 cut(s) | 125, 313, 382, 1219, 2670, 3212 |
| Ama87I | CYCGRG | 1 cut(s) | 1592 |
| AoxI | GGCC | 4 cut(s) | 749, 1888, 3137, 3288 |
| ApeKI | GCWGC | 5 cut(s) | 726, 788, 1841, 2237, 3090 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1980, 2012, 2319, 2351, 3041, 3073 |
| AseI | ATTAAT | 1 cut(s) | 1584 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2135, 2845 |
| AspLEI | GCGC | 1 cut(s) | 2862 |
| AspS9I | GGNCC | 4 cut(s) | 750, 854, 1654, 2102 |
| AsuHPI | GGTGA | 8 cut(s) | 374, 818, 1172, 1409, 1502, 1573, 2310, 2447 |
| AsuII | TTCGAA | 2 cut(s) | 1986, 2219 |
| AvaI | CYCGRG | 1 cut(s) | 1592 |
| AvaII | GGWCC | 3 cut(s) | 854, 1654, 2102 |
| BaeGI | GKGCMC | 1 cut(s) | 235 |
| BalI | TGGCCA | 1 cut(s) | 3139 |
| BamHI | GGATCC | 3 cut(s) | 1087, 2159, 2931 |
| BanI | GGYRCC | 2 cut(s) | 232, 2859 |
| BanII | GRGCYC | 2 cut(s) | 1172, 1292 |
| BbrPI | CACGTG | 1 cut(s) | 2534 |
| BbsI | GAAGAC | 1 cut(s) | 55 |
| Bbv12I | GWGCWC | 2 cut(s) | 1172, 1292 |
| BbvI | GCAGC | 5 cut(s) | 713, 775, 1828, 2224, 3077 |
| BceAI | ACGGC | 2 cut(s) | 739, 890 |
| BciT130I | CCWGG | 2 cut(s) | 113, 1887 |
| BclI | TGATCA | 1 cut(s) | 1000 |
| BcoDI | GTCTC | 6 cut(s) | 125, 313, 382, 1219, 2670, 3212 |
| BcuI | ACTAGT | 2 cut(s) | 1634, 1993 |
| BfaI | CTAG | 4 cut(s) | 744, 1061, 1635, 1994 |
| BfmI | CTRYAG | 1 cut(s) | 789 |
| BfoI | RGCGCY | 1 cut(s) | 2863 |
| BfuAI | ACCTGC | 1 cut(s) | 1201 |
| BisI | GCNGC | 5 cut(s) | 727, 789, 1842, 2238, 3091 |
| BlpI | GCTNAGC | 2 cut(s) | 1171, 1845 |
| BlsI | GCNGC | 5 cut(s) | 728, 790, 1843, 2239, 3092 |
| BmcAI | AGTACT | 1 cut(s) | 1232 |
| Bme1390I | CCNGG | 2 cut(s) | 113, 1887 |
| Bme18I | GGWCC | 3 cut(s) | 854, 1654, 2102 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2898 |
| BmeT110I | CYCGRG | 1 cut(s) | 1592 |
| BmgT120I | GGNCC | 4 cut(s) | 750, 854, 1654, 2102 |
| BmiI | GGNNCC | 8 cut(s) | 234, 855, 878, 1089, 1646, 2161, 2861, 2933 |
| BmrFI | CCNGG | 2 cut(s) | 113, 1887 |
| BmsI | GCATC | 7 cut(s) | 500, 1373, 1784, 2053, 2605, 2687, 3275 |
| BpiI | GAAGAC | 1 cut(s) | 55 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 72, 104, 122, 154 |
| BpmI | CTGGAG | 3 cut(s) | 843, 863, 3200 |
| Bpu10I | CCTNAGC | 1 cut(s) | 732 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1171, 1845 |
| Bpu14I | TTCGAA | 2 cut(s) | 1986, 2219 |
| BpuEI | CTTGAG | 7 cut(s) | 193, 203, 1007, 1103, 1346, 2162, 3128 |
| BsaAI | YACGTR | 2 cut(s) | 596, 2534 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2453 |
| BsaHI | GRCGYC | 1 cut(s) | 2860 |
| BsaI | GGTCTC | 1 cut(s) | 382 |
| BsaJI | CCNNGG | 2 cut(s) | 267, 2428 |
| BsaWI | WCCGGW | 1 cut(s) | 3293 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1214, 1244, 1334, 1364 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 228, 229, 359, 835, 886, 901, 988, 1043 |
| Bse1I | ACTGG | 5 cut(s) | 895, 1821, 2032, 2395, 3140 |
| Bse3DI | GCAATG | 1 cut(s) | 369 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2453 |
| BseBI | CCWGG | 2 cut(s) | 113, 1887 |
| BseDI | CCNNGG | 2 cut(s) | 267, 2428 |
| BseGI | GGATG | 4 cut(s) | 2044, 2104, 2449, 3266 |
| BseJI | GATNNNNATC | 1 cut(s) | 2453 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 228, 229, 359, 835, 886, 901, 988, 1043 |
| BseMI | GCAATG | 1 cut(s) | 369 |
| BseMII | CTCAG | 8 cut(s) | 120, 630, 723, 1185, 1859, 1947, 2681, 2828 |
| BseNI | ACTGG | 5 cut(s) | 895, 1821, 2032, 2395, 3140 |
| BseRI | GAGGAG | 6 cut(s) | 331, 525, 528, 967, 1343, 1472 |
| BseSI | GKGCMC | 1 cut(s) | 235 |
| BseXI | GCAGC | 5 cut(s) | 713, 775, 1828, 2224, 3077 |
| Bsh1236I | CGCG | 1 cut(s) | 229 |
| BshFI | GGCC | 4 cut(s) | 751, 1890, 3139, 3290 |
| BshNI | GGYRCC | 2 cut(s) | 232, 2859 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1172, 1292 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1592 |
| BsiSI | CCGG | 1 cut(s) | 3294 |
| BsiWI | CGTACG | 1 cut(s) | 592 |
| BslFI | GGGAC | 3 cut(s) | 205, 2019, 3233 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 228, 229, 359, 835, 886, 901, 988, 1043 |
| BsmAI | GTCTC | 6 cut(s) | 125, 313, 382, 1219, 2670, 3212 |
| BsmBI | CGTCTC | 1 cut(s) | 125 |
| BsmFI | GGGAC | 3 cut(s) | 205, 2019, 3233 |
| BsmI | GAATGC | 2 cut(s) | 1966, 2046 |
| BsnI | GGCC | 4 cut(s) | 751, 1890, 3139, 3290 |
| Bso31I | GGTCTC | 1 cut(s) | 382 |
| BsoBI | CYCGRG | 1 cut(s) | 1592 |
| Bsp119I | TTCGAA | 2 cut(s) | 1986, 2219 |
| Bsp1286I | GDGCHC | 3 cut(s) | 235, 1172, 1292 |
| Bsp1407I | TGTACA | 2 cut(s) | 1521, 1794 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1171, 1845 |
| BspACI | CCGC | 2 cut(s) | 229, 2410 |
| BspANI | GGCC | 4 cut(s) | 751, 1890, 3139, 3290 |
| BspCNI | CTCAG | 8 cut(s) | 121, 629, 724, 1184, 1858, 1948, 2680, 2829 |
| BspFNI | CGCG | 1 cut(s) | 229 |
| BspHI | TCATGA | 2 cut(s) | 573, 2869 |
| BspLI | GGNNCC | 8 cut(s) | 234, 855, 878, 1089, 1646, 2161, 2861, 2933 |
| BspMAI | CTGCAG | 1 cut(s) | 793 |
| BspMI | ACCTGC | 1 cut(s) | 1201 |
| BspT104I | TTCGAA | 2 cut(s) | 1986, 2219 |
| BspT107I | GGYRCC | 2 cut(s) | 232, 2859 |
| BspTNI | GGTCTC | 1 cut(s) | 382 |
| BsrDI | GCAATG | 1 cut(s) | 369 |
| BsrGI | TGTACA | 2 cut(s) | 1521, 1794 |
| BsrI | ACTGG | 5 cut(s) | 895, 1821, 2032, 2395, 3140 |
| BssECI | CCNNGG | 2 cut(s) | 267, 2428 |
| BssNI | GRCGYC | 1 cut(s) | 2860 |
| BssT1I | CCWWGG | 2 cut(s) | 267, 2428 |
| Bst2UI | CCWGG | 2 cut(s) | 113, 1887 |
| Bst6I | CTCTTC | 1 cut(s) | 2433 |
| BstACI | GRCGYC | 1 cut(s) | 2860 |
| BstAUI | TGTACA | 2 cut(s) | 1521, 1794 |
| BstBAI | YACGTR | 2 cut(s) | 596, 2534 |
| BstBI | TTCGAA | 2 cut(s) | 1986, 2219 |
| BstC8I | GCNNGC | 4 cut(s) | 231, 1756, 1899, 3228 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 986 |
| BstF5I | GGATG | 4 cut(s) | 2044, 2104, 2449, 3266 |
| BstFNI | CGCG | 1 cut(s) | 229 |
| BstH2I | RGCGCY | 1 cut(s) | 2863 |
| BstHHI | GCGC | 1 cut(s) | 2862 |
| BstMAI | GTCTC | 6 cut(s) | 125, 313, 382, 1219, 2670, 3212 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1961 |
| BstNI | CCWGG | 2 cut(s) | 113, 1887 |
| BstNSI | RCATGY | 1 cut(s) | 1901 |
| BstSCI | CCNGG | 2 cut(s) | 111, 1885 |
| BstSFI | CTRYAG | 1 cut(s) | 789 |
| BstSLI | GKGCMC | 1 cut(s) | 235 |
| BstUI | CGCG | 1 cut(s) | 229 |
| BstV1I | GCAGC | 5 cut(s) | 713, 775, 1828, 2224, 3077 |
| BstV2I | GAAGAC | 1 cut(s) | 55 |
| BstX2I | RGATCY | 5 cut(s) | 416, 1087, 2159, 2692, 2931 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3135 |
| BstYI | RGATCY | 5 cut(s) | 416, 1087, 2159, 2692, 2931 |
| BsuRI | GGCC | 4 cut(s) | 751, 1890, 3139, 3290 |
| BtgZI | GCGATG | 1 cut(s) | 2773 |
| BtsCI | GGATG | 4 cut(s) | 2044, 2104, 2449, 3266 |
| BtsI | GCAGTG | 1 cut(s) | 3169 |
| BtsIMutI | CAGTG | 8 cut(s) | 1235, 1282, 1814, 2460, 2542, 3078, 3147, 3169 |
| BveI | ACCTGC | 1 cut(s) | 1201 |
| Cac8I | GCNNGC | 4 cut(s) | 231, 1756, 1899, 3228 |
| CciI | TCATGA | 2 cut(s) | 573, 2869 |
| CfoI | GCGC | 1 cut(s) | 2862 |
| Cfr13I | GGNCC | 4 cut(s) | 750, 854, 1654, 2102 |
| CseI | GACGC | 1 cut(s) | 3032 |
| CsiI | ACCWGGT | 1 cut(s) | 111 |
| Csp6I | GTAC | 7 cut(s) | 593, 1231, 1522, 1770, 1795, 2370, 2525 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3259, 3294 |
| CviQI | GTAC | 7 cut(s) | 593, 1231, 1522, 1770, 1795, 2370, 2525 |
| DinI | GGCGCC | 1 cut(s) | 2861 |
| DraIII | CACNNNGTG | 2 cut(s) | 759, 1691 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2898 |
| EaeI | YGGCCR | 1 cut(s) | 3137 |
| Eam1104I | CTCTTC | 1 cut(s) | 2433 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2898 |
| EarI | CTCTTC | 1 cut(s) | 2433 |
| Ecl136II | GAGCTC | 2 cut(s) | 1170, 1290 |
| Eco130I | CCWWGG | 2 cut(s) | 267, 2428 |
| Eco24I | GRGCYC | 2 cut(s) | 1172, 1292 |
| Eco31I | GGTCTC | 1 cut(s) | 382 |
| Eco32I | GATATC | 1 cut(s) | 367 |
| Eco47I | GGWCC | 3 cut(s) | 854, 1654, 2102 |
| Eco53kI | GAGCTC | 2 cut(s) | 1170, 1290 |
| Eco57I | CTGAAG | 1 cut(s) | 1520 |
| Eco72I | CACGTG | 1 cut(s) | 2534 |
| Eco88I | CYCGRG | 1 cut(s) | 1592 |
| EcoICRI | GAGCTC | 2 cut(s) | 1170, 1290 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 986 |
| EcoO109I | RGGNCCY | 1 cut(s) | 854 |
| EcoRI | GAATTC | 2 cut(s) | 691, 2971 |
| EcoRII | CCWGG | 2 cut(s) | 111, 1885 |
| EcoRV | GATATC | 1 cut(s) | 367 |
| EcoT14I | CCWWGG | 2 cut(s) | 267, 2428 |
| EcoT22I | ATGCAT | 2 cut(s) | 2046, 3268 |
| EcoT38I | GRGCYC | 2 cut(s) | 1172, 1292 |
| EgeI | GGCGCC | 1 cut(s) | 2861 |
| EheI | GGCGCC | 1 cut(s) | 2861 |
| ErhI | CCWWGG | 2 cut(s) | 267, 2428 |
| Esp3I | CGTCTC | 1 cut(s) | 125 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2747, 2779 |
| FaqI | GGGAC | 3 cut(s) | 205, 2019, 3233 |
| FauI | CCCGC | 1 cut(s) | 222 |
| FauNDI | CATATG | 1 cut(s) | 346 |
| FbaI | TGATCA | 1 cut(s) | 1000 |
| Fnu4HI | GCNGC | 5 cut(s) | 727, 789, 1842, 2238, 3091 |
| FokI | GGATG | 4 cut(s) | 2031, 2111, 2456, 3253 |
| FriOI | GRGCYC | 2 cut(s) | 1172, 1292 |
| Fsp4HI | GCNGC | 5 cut(s) | 727, 789, 1842, 2238, 3091 |
| FspBI | CTAG | 4 cut(s) | 744, 1061, 1635, 1994 |
| GlaI | GCGC | 1 cut(s) | 2861 |
| GluI | GCNGC | 5 cut(s) | 727, 789, 1842, 2238, 3091 |
| GsuI | CTGGAG | 3 cut(s) | 843, 863, 3200 |
| HaeII | RGCGCY | 1 cut(s) | 2863 |
| HaeIII | GGCC | 4 cut(s) | 751, 1890, 3139, 3290 |
| HapII | CCGG | 1 cut(s) | 3294 |
| HgaI | GACGC | 1 cut(s) | 3032 |
| HhaI | GCGC | 1 cut(s) | 2862 |
| Hin1I | GRCGYC | 1 cut(s) | 2860 |
| Hin6I | GCGC | 1 cut(s) | 2860 |
| HinP1I | GCGC | 1 cut(s) | 2860 |
| HincII | GTYRAC | 1 cut(s) | 892 |
| HindII | GTYRAC | 1 cut(s) | 892 |
| HindIII | AAGCTT | 3 cut(s) | 476, 1978, 2843 |
| HpaI | GTTAAC | 1 cut(s) | 892 |
| HpaII | CCGG | 1 cut(s) | 3294 |
| HphI | GGTGA | 8 cut(s) | 374, 818, 1172, 1409, 1502, 1573, 2310, 2447 |
| Hpy166II | GTNNAC | 9 cut(s) | 568, 892, 1306, 1524, 1797, 2210, 2761, 2956, 3076 |
| Hpy8I | GTNNAC | 9 cut(s) | 568, 892, 1306, 1524, 1797, 2210, 2761, 2956, 3076 |
| HpyCH4IV | ACGT | 7 cut(s) | 134, 591, 595, 1202, 1451, 2533, 3117 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1961 |
| HpySE526I | ACGT | 7 cut(s) | 134, 591, 595, 1202, 1451, 2533, 3117 |
| Hsp92I | GRCGYC | 1 cut(s) | 2860 |
| HspAI | GCGC | 1 cut(s) | 2860 |
| KasI | GGCGCC | 1 cut(s) | 2859 |
| Ksp22I | TGATCA | 1 cut(s) | 1000 |
| KspAI | GTTAAC | 1 cut(s) | 892 |
| LmnI | GCTCC | 5 cut(s) | 45, 341, 882, 1167, 1287 |
| Lsp1109I | GCAGC | 5 cut(s) | 713, 775, 1828, 2224, 3077 |
| LweI | GCATC | 7 cut(s) | 500, 1373, 1784, 2053, 2605, 2687, 3275 |
| MabI | ACCWGGT | 1 cut(s) | 111 |
| MaeI | CTAG | 4 cut(s) | 744, 1061, 1635, 1994 |
| MaeII | ACGT | 7 cut(s) | 134, 591, 595, 1202, 1451, 2533, 3117 |
| MaeIII | GTNAC | 6 cut(s) | 115, 145, 152, 865, 2585, 3065 |
| MfeI | CAATTG | 4 cut(s) | 1649, 2343, 2487, 2629 |
| MflI | RGATCY | 5 cut(s) | 416, 1087, 2159, 2692, 2931 |
| MhlI | GDGCHC | 3 cut(s) | 235, 1172, 1292 |
| MlsI | TGGCCA | 1 cut(s) | 3139 |
| MluNI | TGGCCA | 1 cut(s) | 3139 |
| Mly113I | GGCGCC | 1 cut(s) | 2860 |
| MlyI | GAGTC | 3 cut(s) | 527, 1073, 1604 |
| MmeI | TCCRAC | 4 cut(s) | 16, 1028, 1730, 3294 |
| Mox20I | TGGCCA | 1 cut(s) | 3139 |
| Mph1103I | ATGCAT | 2 cut(s) | 2046, 3268 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2135, 2845 |
| MscI | TGGCCA | 1 cut(s) | 3139 |
| MslI | CAYNNNNRTG | 2 cut(s) | 578, 3021 |
| Msp20I | TGGCCA | 1 cut(s) | 3139 |
| MspA1I | CMGCKG | 2 cut(s) | 2905, 3230 |
| MspI | CCGG | 1 cut(s) | 3294 |
| MspR9I | CCNGG | 2 cut(s) | 113, 1887 |
| MunI | CAATTG | 4 cut(s) | 1649, 2343, 2487, 2629 |
| Mva1269I | GAATGC | 2 cut(s) | 1966, 2046 |
| MvaI | CCWGG | 2 cut(s) | 113, 1887 |
| MvnI | CGCG | 1 cut(s) | 229 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1961 |
| NarI | GGCGCC | 1 cut(s) | 2860 |
| NdeI | CATATG | 1 cut(s) | 346 |
| NlaIV | GGNNCC | 8 cut(s) | 234, 855, 878, 1089, 1646, 2161, 2861, 2933 |
| NmuCI | GTSAC | 1 cut(s) | 865 |
| NsiI | ATGCAT | 2 cut(s) | 2046, 3268 |
| NspI | RCATGY | 1 cut(s) | 1901 |
| NspV | TTCGAA | 2 cut(s) | 1986, 2219 |
| PaeI | GCATGC | 1 cut(s) | 1901 |
| PaeR7I | CTCGAG | 1 cut(s) | 1592 |
| PagI | TCATGA | 2 cut(s) | 573, 2869 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 146 |
| PctI | GAATGC | 2 cut(s) | 1966, 2046 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2135, 2845 |
| Pfl23II | CGTACG | 1 cut(s) | 592 |
| PflFI | GACNNNGTC | 1 cut(s) | 2575 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 359, 886, 901, 1043 |
| PkrI | GCNGC | 5 cut(s) | 728, 790, 1843, 2239, 3092 |
| PleI | GAGTC | 3 cut(s) | 526, 1072, 1603 |
| PluTI | GGCGCC | 1 cut(s) | 2863 |
| PmaCI | CACGTG | 1 cut(s) | 2534 |
| PmlI | CACGTG | 1 cut(s) | 2534 |
| PpsI | GAGTC | 3 cut(s) | 526, 1072, 1603 |
| Ppu21I | YACGTR | 2 cut(s) | 596, 2534 |
| PpuMI | RGGWCCY | 1 cut(s) | 854 |
| PshBI | ATTAAT | 1 cut(s) | 1584 |
| PsiI | TTATAA | 2 cut(s) | 720, 1143 |
| Psp124BI | GAGCTC | 2 cut(s) | 1172, 1292 |
| Psp1406I | AACGTT | 2 cut(s) | 1202, 3117 |
| Psp5II | RGGWCCY | 1 cut(s) | 854 |
| Psp6I | CCWGG | 2 cut(s) | 111, 1885 |
| PspCI | CACGTG | 1 cut(s) | 2534 |
| PspGI | CCWGG | 2 cut(s) | 111, 1885 |
| PspLI | CGTACG | 1 cut(s) | 592 |
| PspN4I | GGNNCC | 8 cut(s) | 234, 855, 878, 1089, 1646, 2161, 2861, 2933 |
| PspPI | GGNCC | 4 cut(s) | 750, 854, 1654, 2102 |
| PspPPI | RGGWCCY | 1 cut(s) | 854 |
| PstI | CTGCAG | 1 cut(s) | 793 |
| PsuI | RGATCY | 5 cut(s) | 416, 1087, 2159, 2692, 2931 |
| PsyI | GACNNNGTC | 1 cut(s) | 2575 |
| PvuII | CAGCTG | 2 cut(s) | 2905, 3230 |
| RsaI | GTAC | 7 cut(s) | 594, 1232, 1523, 1771, 1796, 2371, 2526 |
| RsaNI | GTAC | 7 cut(s) | 593, 1231, 1522, 1770, 1795, 2370, 2525 |
| RseI | CAYNNNNRTG | 2 cut(s) | 578, 3021 |
| SacI | GAGCTC | 2 cut(s) | 1172, 1292 |
| SatI | GCNGC | 5 cut(s) | 727, 789, 1842, 2238, 3091 |
| Sau96I | GGNCC | 4 cut(s) | 750, 854, 1654, 2102 |
| ScaI | AGTACT | 1 cut(s) | 1232 |
| SchI | GAGTC | 3 cut(s) | 527, 1073, 1604 |
| ScrFI | CCNGG | 2 cut(s) | 113, 1887 |
| SduI | GDGCHC | 3 cut(s) | 235, 1172, 1292 |
| SexAI | ACCWGGT | 1 cut(s) | 111 |
| SfaNI | GCATC | 7 cut(s) | 500, 1373, 1784, 2053, 2605, 2687, 3275 |
| SfcI | CTRYAG | 1 cut(s) | 789 |
| SfoI | GGCGCC | 1 cut(s) | 2861 |
| Sfr274I | CTCGAG | 1 cut(s) | 1592 |
| SfuI | TTCGAA | 2 cut(s) | 1986, 2219 |
| SinI | GGWCC | 3 cut(s) | 854, 1654, 2102 |
| SlaI | CTCGAG | 1 cut(s) | 1592 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 578, 3021 |
| SmlI | CTYRAG | 8 cut(s) | 182, 208, 986, 1082, 1325, 1592, 2141, 3107 |
| SmoI | CTYRAG | 8 cut(s) | 182, 208, 986, 1082, 1325, 1592, 2141, 3107 |
| SpeI | ACTAGT | 2 cut(s) | 1634, 1993 |
| SphI | GCATGC | 1 cut(s) | 1901 |
| SsiI | CCGC | 2 cut(s) | 229, 2410 |
| SspDI | GGCGCC | 1 cut(s) | 2859 |
| SspI | AATATT | 3 cut(s) | 1764, 2154, 3149 |
| SspMI | CTAG | 4 cut(s) | 744, 1061, 1635, 1994 |
| SstI | GAGCTC | 2 cut(s) | 1172, 1292 |
| StyD4I | CCNGG | 2 cut(s) | 111, 1885 |
| StyI | CCWWGG | 2 cut(s) | 267, 2428 |
| TaiI | ACGT | 7 cut(s) | 137, 594, 598, 1205, 1454, 2536, 3120 |
| TaqI | TCGA | 6 cut(s) | 140, 1593, 1986, 2038, 2219, 2284 |
| TatI | WGTACW | 5 cut(s) | 1230, 1521, 1769, 1794, 2524 |
| TscAI | CASTG | 8 cut(s) | 1242, 1282, 1821, 2467, 2549, 3078, 3147, 3169 |
| TseFI | GTSAC | 1 cut(s) | 865 |
| TseI | GCWGC | 5 cut(s) | 726, 788, 1841, 2237, 3090 |
| Tsp45I | GTSAC | 1 cut(s) | 865 |
| TspGWI | ACGGA | 3 cut(s) | 477, 1814, 2387 |
| TspRI | CASTG | 8 cut(s) | 1242, 1282, 1821, 2467, 2549, 3078, 3147, 3169 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2575 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 359, 886, 901, 1043 |
| VpaK11BI | GGWCC | 3 cut(s) | 854, 1654, 2102 |
| VspI | ATTAAT | 1 cut(s) | 1584 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 986 |
| XceI | RCATGY | 1 cut(s) | 1901 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1044 |
| XhoI | CTCGAG | 1 cut(s) | 1592 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2135, 2845 |
| XspI | CTAG | 4 cut(s) | 744, 1061, 1635, 1994 |
| ZrmI | AGTACT | 1 cut(s) | 1232 |
| Zsp2I | ATGCAT | 2 cut(s) | 2046, 3268 |