Rh2CG247300

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000279
Physical Location & Seq
Forward (+)
25935225 .. 25949954
14730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG247300.1

Sequence Viewer

Length: 459 bp
ATGAATTTCCATGGCGAGGCTGGTGCAGCATCAACCTACGCAATATCCCACATCCGAGGAGTTGAGGTCTGGAAGGATTACTACGCAAAGGTTTGCTTCACTCATGACTTTTTGAACTCCATAACAAAAGTTAAAGACATTGTGATTCTTTGCGAAGTGCTTGCGTTATTAACCAAGCTTTTGAGTGGATGGTGCCGACCTCTTGAGGACAAAGGAACTTTAGTGTATGATGGGACTTCTGCTCAACTGTTAGAGAAGTATAAAATCAAAGGGAACTTGAATCTCATTTGGACTGTAGATATTCTCCAGGAGAATGCACATTACATCCAAATTATGAAGTTTTGGGATATTTTGCCATTTTCTCATATACCAGAACTAGCAAAGCGTCTTGACATTGTTTTTGGGAATTTTACAGTGGACAAAATGAACCGCTGCCGTCACAACGTTGACAGGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

152

Amino Acids

17.53

Weight (kDa)

7.7

Isoelectric Point (pI)

26.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AciI CCGC 1 cut(s) 430
AclI AACGTT 1 cut(s) 444
AcsI RAATTY 2 cut(s) 4, 406
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 2 cut(s) 115, 280
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
ApeKI GCWGC 2 cut(s) 26, 432
ApoI RAATTY 2 cut(s) 4, 406
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AspS9I GGNCC 1 cut(s) 453
AvaII GGWCC 1 cut(s) 453
BanI GGYRCC 1 cut(s) 192
BarI GAAGNNNNNNTAC 2 cut(s) 65, 97
BbvI GCAGC 2 cut(s) 38, 419
BccI CCATC 2 cut(s) 183, 224
BceAI ACGGC 1 cut(s) 420
BcgI CGANNNNNNTGC 4 cut(s) 5, 39, 143, 177
BciT130I CCWGG 1 cut(s) 308
BfaI CTAG 2 cut(s) 377, 457
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 2 cut(s) 27, 433
BlsI GCNGC 2 cut(s) 28, 434
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 10, 55
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 2 cut(s) 10, 55
BseGI GGATG 3 cut(s) 51, 194, 324
BseLI CCNNNNNNNGG 1 cut(s) 16
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 2 cut(s) 38, 419
BsgI GTGCAG 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 192
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 247
BsmI GAATGC 1 cut(s) 319
Bsp19I CCATGG 1 cut(s) 10
BspACI CCGC 1 cut(s) 430
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 192
BssECI CCNNGG 2 cut(s) 10, 55
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 3 cut(s) 249, 295, 415
BstC8I GCNNGC 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 3 cut(s) 51, 194, 324
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 2 cut(s) 38, 419
BtgI CCRYGG 1 cut(s) 10
BtsCI GGATG 3 cut(s) 51, 194, 324
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 1 cut(s) 162
CciI TCATGA 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 453
CseI GACGC 1 cut(s) 374
CviAII CATG 2 cut(s) 11, 104
CviJI RGCY 2 cut(s) 20, 178
CviKI_1 RGCY 2 cut(s) 20, 178
Eco130I CCWWGG 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 453
EcoO109I RGGNCCY 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 2 cut(s) 14, 107
FaiI YATR 8 cut(s) 12, 105, 122, 228, 261, 335, 366, 368
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 247
FatI CATG 2 cut(s) 10, 103
Fnu4HI GCNGC 2 cut(s) 27, 433
FokI GGATG 3 cut(s) 38, 201, 311
Fsp4HI GCNGC 2 cut(s) 27, 433
FspBI CTAG 2 cut(s) 377, 457
GluI GCNGC 2 cut(s) 27, 433
GsuI CTGGAG 1 cut(s) 290
HgaI GACGC 1 cut(s) 374
Hin1II CATG 2 cut(s) 14, 107
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 2 cut(s) 145, 280
Hpy166II GTNNAC 2 cut(s) 418, 448
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 4 cut(s) 70, 104, 203, 389
Hpy8I GTNNAC 2 cut(s) 418, 448
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 3 cut(s) 249, 295, 415
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 2 cut(s) 26, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 2 cut(s) 14, 107
LpnPI CCDG 6 cut(s) 6, 55, 293, 320, 384, 436
Lsp1109I GCAGC 2 cut(s) 38, 419
LweI GCATC 1 cut(s) 38
MaeI CTAG 2 cut(s) 377, 457
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 437
MluCI AATT 3 cut(s) 4, 330, 406
MnlI CCTC 5 cut(s) 10, 50, 58, 199, 210
MseI TTAA 2 cut(s) 132, 170
MspA1I CMGCKG 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 308
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 26
NcoI CCATGG 1 cut(s) 10
NlaIII CATG 2 cut(s) 14, 107
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 437
PagI TCATGA 1 cut(s) 103
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 2 cut(s) 145, 280
PfoI TCCNGGA 1 cut(s) 306
PkrI GCNGC 2 cut(s) 28, 434
PpuMI RGGWCCY 1 cut(s) 453
Psp1406I AACGTT 1 cut(s) 444
Psp5II RGGWCCY 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 453
PspPPI RGGWCCY 1 cut(s) 453
SaqAI TTAA 2 cut(s) 132, 170
SatI GCNGC 2 cut(s) 27, 433
Sau96I GGNCC 1 cut(s) 453
ScrFI CCNGG 1 cut(s) 308
SetI ASST 7 cut(s) 38, 69, 93, 180, 202, 447, 458
SfaNI GCATC 1 cut(s) 38
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 3 cut(s) 4, 330, 406
SsiI CCGC 1 cut(s) 430
SspMI CTAG 2 cut(s) 377, 457
StyD4I CCNGG 1 cut(s) 306
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 3 cut(s) 249, 295, 415
TaiI ACGT 1 cut(s) 447
TasI AATT 3 cut(s) 4, 330, 406
TfiI GAWTC 2 cut(s) 145, 280
Tru1I TTAA 2 cut(s) 132, 170
Tru9I TTAA 2 cut(s) 132, 170
TscAI CASTG 1 cut(s) 420
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 2 cut(s) 26, 432
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 3 cut(s) 17, 350, 440
TspRI CASTG 1 cut(s) 420
VpaK11BI GGWCC 1 cut(s) 453
XapI RAATTY 2 cut(s) 4, 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XspI CTAG 2 cut(s) 377, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.