RchiOBHm_Chr3g0488201

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000279
Physical Location & Seq
Forward (+)
35846871 .. 35847727
857 bp
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UTR
Exon/CDS
Intron
PRQ45258

Sequence Viewer

Length: 222 bp
ATGGGGATGAAGAGTAAGGTGAAACAGGAACAAGTTCCAGAGACAAGAAGCCTTGTGGATTTGGTATTCTCTTGGTCTATAAGGGATGTTCTCAATGAAAACCTTTACAGAAATCAGGTGCAGAGGATCCCCGACACATTTGTGACATTGACGAGTTACAAGAAATCATTCATTCCTTCACTTGTTGAGGAAACTCATGCTGATTTACTATCGAATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

73

Amino Acids

8.48

Weight (kDa)

6.55

Isoelectric Point (pI)

24.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 121, 134
AcsI RAATTY 1 cut(s) 214
AleI CACNNNNGTG 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 2 cut(s) 121, 134
ApoI RAATTY 1 cut(s) 214
Asp700I GAANNNNTTC 2 cut(s) 33, 167
AsuHPI GGTGA 1 cut(s) 31
BamHI GGATCC 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 128
BseGI GGATG 2 cut(s) 12, 91
BsgI GTGCAG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 128
BspPI GGATC 2 cut(s) 121, 134
BssMI GATC 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 5
BstF5I GGATG 2 cut(s) 12, 91
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BtsCI GGATG 2 cut(s) 12, 91
CviAII CATG 1 cut(s) 197
CviJI RGCY 1 cut(s) 51
CviKI_1 RGCY 1 cut(s) 51
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
FaeI CATG 1 cut(s) 200
FaiI YATR 2 cut(s) 80, 198
FatI CATG 1 cut(s) 196
FokI GGATG 2 cut(s) 19, 98
Hin1II CATG 1 cut(s) 200
HphI GGTGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 121
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 3 cut(s) 11, 51, 101
MaeIII GTNAC 2 cut(s) 142, 155
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 1 cut(s) 22
MflI RGATCY 1 cut(s) 126
MluCI AATT 1 cut(s) 214
MnlI CCTC 2 cut(s) 117, 181
MroXI GAANNNNTTC 2 cut(s) 33, 167
MslI CAYNNNNRTG 1 cut(s) 140
NdeII GATC 1 cut(s) 126
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 142
OliI CACNNNNGTG 1 cut(s) 140
PdmI GAANNNNTTC 2 cut(s) 33, 167
PspN4I GGNNCC 1 cut(s) 128
PsuI RGATCY 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 140
Sau3AI GATC 1 cut(s) 126
SetI ASST 3 cut(s) 21, 105, 120
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 1 cut(s) 214
TaqI TCGA 1 cut(s) 212
TasI AATT 1 cut(s) 214
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 3 cut(s) 23, 111, 160
XapI RAATTY 1 cut(s) 214
XmnI GAANNNNTTC 2 cut(s) 33, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.