Rh6AG133900

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000279
Physical Location & Seq
Forward (+)
20303806 .. 20306143
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG133900.1

Sequence Viewer

Length: 570 bp
ATGCTTGTTTACTTTGCCAATGAATTTTACAACTCCATCGCAAAAATTAAAGACCCCGAGATTCGTCGGGAAGTGGTTTCCCTACTGACAAAGCTTTCAAGTGGTTGGCGCCAATCTCATGAGGCGAAACTCTTTGGTAGGACTTCTTGTCAGCTATTAGAGAAGTATCAAGTCGATGAGAACCTGAATTTGATTTGGACTGTGGACATTCTCCAAGAGAATTCACAACATGTACAGACTATACAAGTTTGGGATATTGTGCCACATTCTGAAGTTCCAAATCTCACAAACCGTCTTGACATCATTTTTGGGAGTTACACAGTGGACAAGGTTAATCGCTGCAAACAAAGAAGTCTTGAGGGGGATGATGTAGTTCCAATTAGATGGCCGGTGGAATATTCAAGCAGTTGCAGTGAATCTGATCCTCTCGAGTTCCTTTCAACACCATTATCTTGTCTCACTCTGAGGGACGAGCCAGCTGAAAATTCAGCTGCATCTTATATTAGAAATAATGCATCCAATATGAGTGGAAAGGAGGCCACCGGATCAACACCAAGGTGTATAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

189

Amino Acids

21.49

Weight (kDa)

5.13

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AclWI GGATC 2 cut(s) 416, 553
AcoI YGGCCR 1 cut(s) 386
AcsI RAATTY 4 cut(s) 23, 187, 220, 484
AcuI CTGAAG 1 cut(s) 291
AcyI GRCGYC 1 cut(s) 109
AfaI GTAC 1 cut(s) 234
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 3 cut(s) 99, 402, 441
AhdI GACNNNNNGTC 1 cut(s) 147
AleI CACNNNNGTG 1 cut(s) 556
AluBI AGCT 4 cut(s) 94, 154, 479, 491
AluI AGCT 4 cut(s) 94, 154, 479, 491
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 2 cut(s) 416, 553
Ama87I CYCGRG 2 cut(s) 56, 428
AoxI GGCC 2 cut(s) 386, 537
ApeKI GCWGC 2 cut(s) 339, 491
ApoI RAATTY 4 cut(s) 23, 187, 220, 484
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AspLEI GCGC 1 cut(s) 111
AvaI CYCGRG 2 cut(s) 56, 428
BanI GGYRCC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 326, 478
BccI CCATC 2 cut(s) 44, 378
BcoDI GTCTC 1 cut(s) 461
BfoI RGCGCY 1 cut(s) 112
BisI GCNGC 2 cut(s) 340, 492
BlsI GCNGC 2 cut(s) 341, 493
BmeRI GACNNNNNGTC 1 cut(s) 147
BmeT110I CYCGRG 2 cut(s) 56, 428
BmiI GGNNCC 1 cut(s) 110
BmsI GCATC 2 cut(s) 503, 524
BpuEI CTTGAG 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 554
BsaWI WCCGGW 1 cut(s) 542
Bse118I RCCGGY 1 cut(s) 388
BseDI CCNNGG 1 cut(s) 554
BseGI GGATG 2 cut(s) 370, 515
BseMII CTCAG 1 cut(s) 455
BseXI GCAGC 2 cut(s) 326, 478
BshFI GGCC 2 cut(s) 388, 539
BshNI GGYRCC 1 cut(s) 108
BsiHKCI CYCGRG 2 cut(s) 56, 428
BsiSI CCGG 2 cut(s) 389, 543
BslFI GGGAC 1 cut(s) 482
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 2 cut(s) 388, 539
BsoBI CYCGRG 2 cut(s) 56, 428
Bsp1407I TGTACA 1 cut(s) 232
Bsp143I GATC 2 cut(s) 421, 545
BspANI GGCC 2 cut(s) 388, 539
BspCNI CTCAG 1 cut(s) 456
BspHI TCATGA 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 110
BspPI GGATC 2 cut(s) 416, 553
BspT107I GGYRCC 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 388
BsrGI TGTACA 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 554
BssMI GATC 2 cut(s) 421, 545
BssNI GRCGYC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 554
Bst4CI ACNGT 3 cut(s) 202, 293, 322
BstACI GRCGYC 1 cut(s) 109
BstAUI TGTACA 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 1 cut(s) 464
BstF5I GGATG 2 cut(s) 370, 515
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 2 cut(s) 424, 548
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 2 cut(s) 421, 545
BstNSI RCATGY 1 cut(s) 233
BstV1I GCAGC 2 cut(s) 326, 478
BstXI CCANNNNNNTGG 1 cut(s) 384
BsuRI GGCC 2 cut(s) 388, 539
BtgZI GCGATG 1 cut(s) 22
BtsCI GGATG 2 cut(s) 370, 515
BtsI GCAGTG 1 cut(s) 418
BtsIMutI CAGTG 2 cut(s) 327, 418
Cac8I GCNNGC 1 cut(s) 477
CciI TCATGA 1 cut(s) 118
CfoI GCGC 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 388
Csp6I GTAC 1 cut(s) 233
CspCI CAANNNNNGTGG 2 cut(s) 508, 543
CviAII CATG 2 cut(s) 119, 230
CviJI RGCY 7 cut(s) 94, 154, 388, 475, 479, 491, 539
CviKI_1 RGCY 7 cut(s) 94, 154, 388, 475, 479, 491, 539
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 1 cut(s) 464
DinI GGCGCC 1 cut(s) 110
DpnI GATC 2 cut(s) 423, 547
DpnII GATC 2 cut(s) 421, 545
DriI GACNNNNNGTC 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 386
Eam1105I GACNNNNNGTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 554
Eco57I CTGAAG 1 cut(s) 291
Eco88I CYCGRG 2 cut(s) 56, 428
EcoRI GAATTC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 554
EcoT22I ATGCAT 1 cut(s) 517
EgeI GGCGCC 1 cut(s) 110
EheI GGCGCC 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 554
FaeI CATG 2 cut(s) 122, 233
FaiI YATR 6 cut(s) 120, 231, 242, 501, 524, 563
FaqI GGGAC 1 cut(s) 482
FatI CATG 2 cut(s) 118, 229
Fnu4HI GCNGC 2 cut(s) 340, 492
FokI GGATG 2 cut(s) 377, 502
Fsp4HI GCNGC 2 cut(s) 340, 492
GlaI GCGC 1 cut(s) 110
GluI GCNGC 2 cut(s) 340, 492
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 2 cut(s) 388, 539
HapII CCGG 2 cut(s) 389, 543
HhaI GCGC 1 cut(s) 111
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 2 cut(s) 122, 233
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 2 cut(s) 61, 416
HpaII CCGG 2 cut(s) 389, 543
Hpy166II GTNNAC 3 cut(s) 10, 205, 325
Hpy188I TCNGA 3 cut(s) 271, 421, 465
Hpy188III TCNNGA 5 cut(s) 68, 119, 296, 356, 428
Hpy8I GTNNAC 3 cut(s) 10, 205, 325
Hpy99I CGWCG 1 cut(s) 69
HpyCH4III ACNGT 3 cut(s) 202, 293, 322
HpyCH4V TGCA 4 cut(s) 342, 411, 494, 515
HpyF3I CTNAG 1 cut(s) 464
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 2 cut(s) 122, 233
HspAI GCGC 1 cut(s) 109
KasI GGCGCC 1 cut(s) 108
Kzo9I GATC 2 cut(s) 421, 545
LpnPI CCDG 4 cut(s) 197, 402, 489, 556
Lsp1109I GCAGC 2 cut(s) 326, 478
LweI GCATC 2 cut(s) 503, 524
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 423, 547
MboI GATC 2 cut(s) 421, 545
MluCI AATT 6 cut(s) 23, 45, 187, 220, 378, 484
Mly113I GGCGCC 1 cut(s) 109
MnlI CCTC 5 cut(s) 115, 352, 435, 459, 529
Mph1103I ATGCAT 1 cut(s) 517
MseI TTAA 2 cut(s) 48, 333
MslI CAYNNNNRTG 1 cut(s) 556
MspA1I CMGCKG 2 cut(s) 479, 491
MspI CCGG 2 cut(s) 389, 543
NarI GGCGCC 1 cut(s) 109
NdeII GATC 2 cut(s) 421, 545
NlaIII CATG 2 cut(s) 122, 233
NlaIV GGNNCC 1 cut(s) 110
NsiI ATGCAT 1 cut(s) 517
NspI RCATGY 1 cut(s) 233
OliI CACNNNNGTG 1 cut(s) 556
PaeR7I CTCGAG 1 cut(s) 428
PagI TCATGA 1 cut(s) 118
PciI ACATGT 1 cut(s) 229
PfeI GAWTC 2 cut(s) 61, 416
PkrI GCNGC 2 cut(s) 341, 493
PluTI GGCGCC 1 cut(s) 112
PscI ACATGT 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 110
PvuII CAGCTG 2 cut(s) 479, 491
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
RseI CAYNNNNRTG 1 cut(s) 556
SaqAI TTAA 2 cut(s) 48, 333
SatI GCNGC 2 cut(s) 340, 492
Sau3AI GATC 2 cut(s) 421, 545
SetI ASST 7 cut(s) 96, 156, 186, 333, 481, 493, 560
SfaNI GCATC 2 cut(s) 503, 524
SfoI GGCGCC 1 cut(s) 110
Sfr274I CTCGAG 1 cut(s) 428
SlaI CTCGAG 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 556
SmlI CTYRAG 2 cut(s) 356, 428
SmoI CTYRAG 2 cut(s) 356, 428
Sse9I AATT 6 cut(s) 23, 45, 187, 220, 378, 484
SspDI GGCGCC 1 cut(s) 108
SspI AATATT 1 cut(s) 398
StyI CCWWGG 1 cut(s) 554
TaaI ACNGT 3 cut(s) 202, 293, 322
TaqI TCGA 2 cut(s) 174, 429
TasI AATT 6 cut(s) 23, 45, 187, 220, 378, 484
TatI WGTACW 1 cut(s) 232
TfiI GAWTC 2 cut(s) 61, 416
Tru1I TTAA 2 cut(s) 48, 333
Tru9I TTAA 2 cut(s) 48, 333
TscAI CASTG 2 cut(s) 327, 418
TseI GCWGC 2 cut(s) 339, 491
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 2 cut(s) 327, 418
XapI RAATTY 4 cut(s) 23, 187, 220, 484
XceI RCATGY 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 428
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.