AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 179 |
| AcsI | RAATTY | 2 cut(s) | 90, 243 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 179 |
| AgsI | TTSAA | 1 cut(s) | 232 |
| Alw26I | GTCTC | 1 cut(s) | 273 |
| AoxI | GGCC | 2 cut(s) | 75, 236 |
| ApaI | GGGCCC | 1 cut(s) | 240 |
| ApoI | RAATTY | 2 cut(s) | 90, 243 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 8 |
| AspS9I | GGNCC | 4 cut(s) | 76, 122, 236, 237 |
| AsuII | TTCGAA | 1 cut(s) | 110 |
| AvaII | GGWCC | 1 cut(s) | 122 |
| BaeGI | GKGCMC | 1 cut(s) | 240 |
| BanII | GRGCYC | 1 cut(s) | 240 |
| BclI | TGATCA | 1 cut(s) | 223 |
| BcoDI | GTCTC | 1 cut(s) | 273 |
| BfaI | CTAG | 1 cut(s) | 292 |
| BglII | AGATCT | 1 cut(s) | 184 |
| Bme18I | GGWCC | 1 cut(s) | 122 |
| BmgT120I | GGNCC | 4 cut(s) | 76, 122, 236, 237 |
| BmiI | GGNNCC | 2 cut(s) | 78, 238 |
| Bpu14I | TTCGAA | 1 cut(s) | 110 |
| BpuEI | CTTGAG | 1 cut(s) | 37 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 179 |
| Bse3DI | GCAATG | 1 cut(s) | 255 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 179 |
| BseMI | GCAATG | 1 cut(s) | 255 |
| BseSI | GKGCMC | 1 cut(s) | 240 |
| BshFI | GGCC | 2 cut(s) | 77, 238 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 179 |
| BsmAI | GTCTC | 1 cut(s) | 273 |
| BsnI | GGCC | 2 cut(s) | 77, 238 |
| Bsp119I | TTCGAA | 1 cut(s) | 110 |
| Bsp120I | GGGCCC | 1 cut(s) | 236 |
| Bsp1286I | GDGCHC | 1 cut(s) | 240 |
| Bsp143I | GATC | 3 cut(s) | 43, 184, 223 |
| BspANI | GGCC | 2 cut(s) | 77, 238 |
| BspLI | GGNNCC | 2 cut(s) | 78, 238 |
| BspT104I | TTCGAA | 1 cut(s) | 110 |
| BsrDI | GCAATG | 1 cut(s) | 255 |
| BssMI | GATC | 3 cut(s) | 43, 184, 223 |
| Bst4CI | ACNGT | 2 cut(s) | 100, 284 |
| BstBI | TTCGAA | 1 cut(s) | 110 |
| BstKTI | GATC | 3 cut(s) | 46, 187, 226 |
| BstMAI | GTCTC | 1 cut(s) | 273 |
| BstMBI | GATC | 3 cut(s) | 43, 184, 223 |
| BstNSI | RCATGY | 1 cut(s) | 41 |
| BstSLI | GKGCMC | 1 cut(s) | 240 |
| BstX2I | RGATCY | 1 cut(s) | 184 |
| BstYI | RGATCY | 1 cut(s) | 184 |
| BsuRI | GGCC | 2 cut(s) | 77, 238 |
| Cfr13I | GGNCC | 4 cut(s) | 76, 122, 236, 237 |
| CviAII | CATG | 3 cut(s) | 38, 58, 119 |
| CviJI | RGCY | 2 cut(s) | 77, 238 |
| CviKI_1 | RGCY | 2 cut(s) | 77, 238 |
| DpnI | GATC | 3 cut(s) | 45, 186, 225 |
| DpnII | GATC | 3 cut(s) | 43, 184, 223 |
| Eco24I | GRGCYC | 1 cut(s) | 240 |
| Eco47I | GGWCC | 1 cut(s) | 122 |
| EcoO109I | RGGNCCY | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 1 cut(s) | 240 |
| FaeI | CATG | 3 cut(s) | 41, 61, 122 |
| FaiI | YATR | 8 cut(s) | 39, 59, 120, 144, 166, 168, 262, 264 |
| FatI | CATG | 3 cut(s) | 37, 57, 118 |
| FauNDI | CATATG | 2 cut(s) | 166, 262 |
| FbaI | TGATCA | 1 cut(s) | 223 |
| FriOI | GRGCYC | 1 cut(s) | 240 |
| FspBI | CTAG | 1 cut(s) | 292 |
| HaeIII | GGCC | 2 cut(s) | 77, 238 |
| Hin1II | CATG | 3 cut(s) | 41, 61, 122 |
| HinfI | GANTC | 3 cut(s) | 64, 115, 134 |
| Hpy188I | TCNGA | 1 cut(s) | 96 |
| Hpy188III | TCNNGA | 1 cut(s) | 86 |
| HpyAV | CCTTC | 1 cut(s) | 27 |
| HpyCH4III | ACNGT | 2 cut(s) | 100, 284 |
| HpyCH4V | TGCA | 1 cut(s) | 260 |
| Hsp92II | CATG | 3 cut(s) | 41, 61, 122 |
| Ksp22I | TGATCA | 1 cut(s) | 223 |
| Kzo9I | GATC | 3 cut(s) | 43, 184, 223 |
| LpnPI | CCDG | 3 cut(s) | 59, 161, 253 |
| MaeI | CTAG | 1 cut(s) | 292 |
| MaeIII | GTNAC | 1 cut(s) | 148 |
| MalI | GATC | 3 cut(s) | 45, 186, 225 |
| MboI | GATC | 3 cut(s) | 43, 184, 223 |
| MboII | GAAGA | 1 cut(s) | 124 |
| MflI | RGATCY | 1 cut(s) | 184 |
| MhlI | GDGCHC | 1 cut(s) | 240 |
| MluCI | AATT | 2 cut(s) | 90, 243 |
| MlyI | GAGTC | 1 cut(s) | 143 |
| MmeI | TCCRAC | 1 cut(s) | 160 |
| MnlI | CCTC | 2 cut(s) | 22, 135 |
| MroXI | GAANNNNTTC | 1 cut(s) | 8 |
| MseI | TTAA | 3 cut(s) | 102, 197, 207 |
| NdeI | CATATG | 2 cut(s) | 166, 262 |
| NdeII | GATC | 3 cut(s) | 43, 184, 223 |
| NlaIII | CATG | 3 cut(s) | 41, 61, 122 |
| NlaIV | GGNNCC | 2 cut(s) | 78, 238 |
| NspI | RCATGY | 1 cut(s) | 41 |
| NspV | TTCGAA | 1 cut(s) | 110 |
| PdmI | GAANNNNTTC | 1 cut(s) | 8 |
| PfeI | GAWTC | 2 cut(s) | 64, 115 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 179 |
| PleI | GAGTC | 1 cut(s) | 142 |
| PpsI | GAGTC | 1 cut(s) | 142 |
| PspN4I | GGNNCC | 2 cut(s) | 78, 238 |
| PspOMI | GGGCCC | 1 cut(s) | 236 |
| PspPI | GGNCC | 4 cut(s) | 76, 122, 236, 237 |
| PsuI | RGATCY | 1 cut(s) | 184 |
| SaqAI | TTAA | 3 cut(s) | 102, 197, 207 |
| Sau3AI | GATC | 3 cut(s) | 43, 184, 223 |
| Sau96I | GGNCC | 4 cut(s) | 76, 122, 236, 237 |
| SchI | GAGTC | 1 cut(s) | 143 |
| SduI | GDGCHC | 1 cut(s) | 240 |
| SetI | ASST | 2 cut(s) | 127, 180 |
| SfuI | TTCGAA | 1 cut(s) | 110 |
| SinI | GGWCC | 1 cut(s) | 122 |
| SmlI | CTYRAG | 1 cut(s) | 52 |
| SmoI | CTYRAG | 1 cut(s) | 52 |
| Sse9I | AATT | 2 cut(s) | 90, 243 |
| SspMI | CTAG | 1 cut(s) | 292 |
| TaaI | ACNGT | 2 cut(s) | 100, 284 |
| TaqI | TCGA | 2 cut(s) | 87, 110 |
| TasI | AATT | 2 cut(s) | 90, 243 |
| TfiI | GAWTC | 2 cut(s) | 64, 115 |
| Tru1I | TTAA | 3 cut(s) | 102, 197, 207 |
| Tru9I | TTAA | 3 cut(s) | 102, 197, 207 |
| TspDTI | ATGAA | 3 cut(s) | 17, 77, 257 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 179 |
| VpaK11BI | GGWCC | 1 cut(s) | 122 |
| XapI | RAATTY | 2 cut(s) | 90, 243 |
| XceI | RCATGY | 1 cut(s) | 41 |
| XmnI | GAANNNNTTC | 1 cut(s) | 8 |
| XspI | CTAG | 1 cut(s) | 292 |