MD11G1222900.v1.1

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000279
Physical Location & Seq
Reverse (-)
32698880 .. 32699806
927 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1222900.v1.1.491

Sequence Viewer

Length: 756 bp
ATGTCAGCGCTTATTTCCTCACTTGATTCTTTTGAATCATTGTTGCGTGATGGTAATGTTATATCTGAAGAACTGGAAAACCTTTCCTCCTGTCAGCAAGTTGCTGAAGATTTGTACATCCCGGAAGTTGCTGAGACAATGGATTACAAATCACTTCAACTTTGCATGAGGAGAAGCGAGTGCCTTTCTGTTCTGAAAGTGCCAATGGTGCCTCCCAACATTTTGTTTATCGAAGAAGCTGCACAGGTGAAAGAGTGTGAGCTCACCATACCGTTGCAACTTCAGGGTGTCAAGCATGCTATTCTTGTGGGTGTTGAATACCAGTTACCTGCTATAGTTAAAAGTAATCTTGTTGAGAGGCTAAGCTCTTTGGGTCACCCAAAACACGTACTTGATATGCAATACAGAATGCAACCGTCCGTAAGTTTGTTTCCAAATTATAAATTTTATCATAATCAGATAATGGATACTCCAAATGTAAAGAGAAGCTGCTATGAGAAAAGATTTCTTCCGGCAACAATGTATGGTCGTTATTCTTTTATAAATGTAATTGGTGGTCAAGCGGAAAAGGAAGGTGATAAACATAATCGGAAGAACATTGTCGAGGTGAAGATAGTTGACGATTACCAGGGAGGGGAGGAGGACAATGTGCTTTGGATACTGGTCTCGAGTTCTTTCCATAAACATGTGAATGTGCTTGCAGAGGCTTTCGAAAAGATTGATAATACTTATAGTGATTGCGAGCTTTGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

252

Amino Acids

28.62

Weight (kDa)

5.13

Isoelectric Point (pI)

59.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_11 PF13086 72 - 116 3.5e-07 AAA domain
AAA_12 PF13087 115 - 206 2.6e-13 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 441, 542
Acc36I ACCTGC 1 cut(s) 337
AccB1I GGYRCC 1 cut(s) 208
AciI CCGC 1 cut(s) 563
AcsI RAATTY 1 cut(s) 443
AcuI CTGAAG 3 cut(s) 87, 126, 266
AfaI GTAC 2 cut(s) 116, 390
AfeI AGCGCT 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 634
AflIII ACRYGT 2 cut(s) 385, 685
AgsI TTSAA 3 cut(s) 35, 158, 317
AjnI CCWGG 1 cut(s) 627
AluBI AGCT 5 cut(s) 239, 262, 366, 489, 745
AluI AGCT 5 cut(s) 239, 262, 366, 489, 745
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 2 cut(s) 128, 670
Ama87I CYCGRG 1 cut(s) 667
Aor51HI AGCGCT 1 cut(s) 9
ApeKI GCWGC 2 cut(s) 239, 489
ApoI RAATTY 1 cut(s) 443
AspLEI GCGC 1 cut(s) 10
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 5 cut(s) 256, 259, 368, 587, 619
AsuII TTCGAA 1 cut(s) 711
AvaI CYCGRG 1 cut(s) 667
BanI GGYRCC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 226, 476
BccI CCATC 1 cut(s) 44
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 629
BciVI GTATCC 2 cut(s) 460, 651
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 128, 670
BfmI CTRYAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 337
BfuI GTATCC 2 cut(s) 460, 651
BisI GCNGC 2 cut(s) 240, 490
BlpI GCTNAGC 1 cut(s) 362
BlsI GCNGC 2 cut(s) 241, 491
Bme1390I CCNGG 2 cut(s) 122, 629
BmeT110I CYCGRG 1 cut(s) 667
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 2 cut(s) 122, 629
Bpu1102I GCTNAGC 1 cut(s) 362
Bpu14I TTCGAA 1 cut(s) 711
BpuMI CCSGG 1 cut(s) 122
BsaAI YACGTR 1 cut(s) 388
BsaI GGTCTC 1 cut(s) 670
BsaJI CCNNGG 1 cut(s) 628
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 634
Bse1I ACTGG 3 cut(s) 78, 322, 666
BseBI CCWGG 1 cut(s) 629
BseDI CCNNGG 1 cut(s) 628
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 634
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 3 cut(s) 78, 322, 666
BseRI GAGGAG 2 cut(s) 184, 653
BseXI GCAGC 2 cut(s) 226, 476
BsgI GTGCAG 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 667
BsiSI CCGG 2 cut(s) 122, 512
BslI CCNNNNNNNGG 1 cut(s) 634
BsmAI GTCTC 2 cut(s) 128, 670
BsmI GAATGC 1 cut(s) 414
Bso31I GGTCTC 1 cut(s) 670
BsoBI CYCGRG 1 cut(s) 667
Bsp119I TTCGAA 1 cut(s) 711
Bsp1286I GDGCHC 1 cut(s) 264
Bsp1407I TGTACA 1 cut(s) 114
Bsp1720I GCTNAGC 1 cut(s) 362
BspACI CCGC 1 cut(s) 563
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 210
BspMI ACCTGC 1 cut(s) 337
BspT104I TTCGAA 1 cut(s) 711
BspT107I GGYRCC 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 670
BsrGI TGTACA 1 cut(s) 114
BsrI ACTGG 3 cut(s) 78, 322, 666
BssECI CCNNGG 1 cut(s) 628
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 2 cut(s) 273, 417
BstAUI TGTACA 1 cut(s) 114
BstBAI YACGTR 1 cut(s) 388
BstBI TTCGAA 1 cut(s) 711
BstC8I GCNNGC 3 cut(s) 297, 699, 743
BstDEI CTNAG 2 cut(s) 132, 362
BstEII GGTNACC 1 cut(s) 374
BstF5I GGATG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstMAI GTCTC 2 cut(s) 128, 670
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 629
BstNSI RCATGY 2 cut(s) 299, 689
BstPI GGTNACC 1 cut(s) 374
BstSCI CCNGG 2 cut(s) 120, 627
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 226, 476
BsuI GTATCC 2 cut(s) 460, 651
BtsCI GGATG 1 cut(s) 117
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 3 cut(s) 297, 699, 743
CfoI GCGC 1 cut(s) 10
Csp6I GTAC 2 cut(s) 115, 389
CviAII CATG 3 cut(s) 166, 296, 686
CviJI RGCY 8 cut(s) 239, 262, 361, 366, 489, 707, 745, 753
CviKI_1 RGCY 8 cut(s) 239, 262, 361, 366, 489, 707, 745, 753
CviQI GTAC 2 cut(s) 115, 389
DdeI CTNAG 2 cut(s) 132, 362
Ecl136II GAGCTC 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 670
Eco47III AGCGCT 1 cut(s) 9
Eco53kI GAGCTC 1 cut(s) 262
Eco57I CTGAAG 3 cut(s) 87, 126, 266
Eco88I CYCGRG 1 cut(s) 667
Eco91I GGTNACC 1 cut(s) 374
EcoICRI GAGCTC 1 cut(s) 262
EcoO65I GGTNACC 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 627
EcoT38I GRGCYC 1 cut(s) 264
FaeI CATG 3 cut(s) 169, 299, 689
FatI CATG 3 cut(s) 165, 295, 685
Fnu4HI GCNGC 2 cut(s) 240, 490
FokI GGATG 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 2 cut(s) 240, 490
GlaI GCGC 1 cut(s) 9
GluI GCNGC 2 cut(s) 240, 490
HaeII RGCGCY 1 cut(s) 11
HapII CCGG 2 cut(s) 122, 512
HhaI GCGC 1 cut(s) 10
Hin1II CATG 3 cut(s) 169, 299, 689
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 2 cut(s) 26, 35
HpaII CCGG 2 cut(s) 122, 512
HphI GGTGA 5 cut(s) 256, 259, 368, 587, 619
Hpy166II GTNNAC 1 cut(s) 619
Hpy188I TCNGA 4 cut(s) 67, 195, 459, 591
Hpy188III TCNNGA 1 cut(s) 667
Hpy8I GTNNAC 1 cut(s) 619
HpyAV CCTTC 1 cut(s) 566
HpyCH4III ACNGT 2 cut(s) 273, 417
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 6 cut(s) 165, 242, 277, 400, 412, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 2 cut(s) 132, 362
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 3 cut(s) 169, 299, 689
HspAI GCGC 1 cut(s) 8
Lsp1109I GCAGC 2 cut(s) 226, 476
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 2 cut(s) 324, 374
MboII GAAGA 6 cut(s) 80, 119, 245, 500, 604, 622
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 3 cut(s) 436, 443, 549
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 2 cut(s) 684, 690
MspI CCGG 2 cut(s) 122, 512
MspR9I CCNGG 2 cut(s) 122, 629
Mva1269I GAATGC 1 cut(s) 414
MvaI CCWGG 1 cut(s) 629
MwoI GCNNNNNNNGC 1 cut(s) 208
NciI CCSGG 1 cut(s) 122
NlaIII CATG 3 cut(s) 169, 299, 689
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 374
NspI RCATGY 2 cut(s) 299, 689
NspV TTCGAA 1 cut(s) 711
PaeI GCATGC 1 cut(s) 299
PaeR7I CTCGAG 1 cut(s) 667
PciI ACATGT 1 cut(s) 685
PctI GAATGC 1 cut(s) 414
PfeI GAWTC 2 cut(s) 26, 35
PfoI TCCNGGA 1 cut(s) 120
PkrI GCNGC 2 cut(s) 241, 491
Ppu21I YACGTR 1 cut(s) 388
PscI ACATGT 1 cut(s) 685
PsiI TTATAA 2 cut(s) 441, 542
Psp124BI GAGCTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 627
PspEI GGTNACC 1 cut(s) 374
PspGI CCWGG 1 cut(s) 627
PspN4I GGNNCC 1 cut(s) 210
RsaI GTAC 2 cut(s) 116, 390
RsaNI GTAC 2 cut(s) 115, 389
RseI CAYNNNNRTG 2 cut(s) 684, 690
SacI GAGCTC 1 cut(s) 264
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 2 cut(s) 240, 490
ScrFI CCNGG 2 cut(s) 122, 629
SduI GDGCHC 1 cut(s) 264
SfcI CTRYAG 1 cut(s) 333
Sfr274I CTCGAG 1 cut(s) 667
SfuI TTCGAA 1 cut(s) 711
SlaI CTCGAG 1 cut(s) 667
SmiMI CAYNNNNRTG 2 cut(s) 684, 690
SmlI CTYRAG 1 cut(s) 667
SmoI CTYRAG 1 cut(s) 667
SphI GCATGC 1 cut(s) 299
Sse9I AATT 3 cut(s) 436, 443, 549
SsiI CCGC 1 cut(s) 563
SstI GAGCTC 1 cut(s) 264
StyD4I CCNGG 2 cut(s) 120, 627
TaaI ACNGT 2 cut(s) 273, 417
TaiI ACGT 1 cut(s) 390
TaqI TCGA 4 cut(s) 231, 603, 668, 711
TasI AATT 3 cut(s) 436, 443, 549
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 2 cut(s) 26, 35
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 2 cut(s) 239, 489
Tsp45I GTSAC 1 cut(s) 374
TspGWI ACGGA 1 cut(s) 409
XapI RAATTY 1 cut(s) 443
XceI RCATGY 2 cut(s) 299, 689
XhoI CTCGAG 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.