AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1227, 2385 |
| AarI | CACCTGC | 1 cut(s) | 792 |
| Acc36I | ACCTGC | 1 cut(s) | 792 |
| AccB1I | GGYRCC | 4 cut(s) | 232, 804, 1729, 2919 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 359, 851 |
| AccI | GTMKAC | 2 cut(s) | 538, 3043 |
| AccIII | TCCGGA | 1 cut(s) | 2994 |
| AciI | CCGC | 1 cut(s) | 2470 |
| AcoI | YGGCCR | 2 cut(s) | 1780, 3197 |
| AcuI | CTGAAG | 2 cut(s) | 1562, 1595 |
| AdeI | CACNNNGTG | 1 cut(s) | 1751 |
| AfaI | GTAC | 7 cut(s) | 1313, 1360, 1489, 1598, 1831, 2431, 3087 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 228, 359, 851, 1072, 1127 |
| AflIII | ACRYGT | 2 cut(s) | 132, 2580 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 870, 2958 |
| AhlI | ACTAGT | 1 cut(s) | 2053 |
| AjiI | CACGTC | 1 cut(s) | 2506 |
| AjnI | CCWGG | 3 cut(s) | 111, 844, 1945 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1787, 1819 |
| AleI | CACNNNNGTG | 1 cut(s) | 1386 |
| Alw21I | GWGCWC | 1 cut(s) | 1253 |
| Alw26I | GTCTC | 2 cut(s) | 231, 382 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 851, 3231 |
| Ama87I | CYCGRG | 1 cut(s) | 228 |
| Aor13HI | TCCGGA | 1 cut(s) | 2994 |
| AoxI | GGCC | 6 cut(s) | 734, 1780, 1948, 2323, 3197, 3357 |
| ApeKI | GCWGC | 5 cut(s) | 711, 773, 961, 1901, 3150 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2040, 2072 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 745, 2195, 2905 |
| AspLEI | GCGC | 1 cut(s) | 923 |
| AspS9I | GGNCC | 5 cut(s) | 839, 1448, 2162, 2627, 2863 |
| AsuHPI | GGTGA | 8 cut(s) | 374, 1253, 1274, 1400, 1577, 1648, 2370, 2507 |
| AsuII | TTCGAA | 1 cut(s) | 2046 |
| AvaI | CYCGRG | 1 cut(s) | 228 |
| AvaII | GGWCC | 5 cut(s) | 839, 1448, 2162, 2627, 2863 |
| BaeGI | GKGCMC | 1 cut(s) | 235 |
| BalI | TGGCCA | 2 cut(s) | 1782, 3199 |
| BamHI | GGATCC | 3 cut(s) | 1171, 2219, 2991 |
| BanI | GGYRCC | 4 cut(s) | 232, 804, 1729, 2919 |
| BanII | GRGCYC | 1 cut(s) | 1253 |
| BbsI | GAAGAC | 2 cut(s) | 55, 2718 |
| Bbv12I | GWGCWC | 1 cut(s) | 1253 |
| BbvCI | CCTCAGC | 2 cut(s) | 965, 1843 |
| BbvI | GCAGC | 5 cut(s) | 698, 760, 948, 1888, 3137 |
| BccI | CCATC | 7 cut(s) | 726, 816, 1463, 2153, 2474, 2855, 2981 |
| BceAI | ACGGC | 1 cut(s) | 974 |
| BciT130I | CCWGG | 3 cut(s) | 113, 846, 1947 |
| BclI | TGATCA | 2 cut(s) | 1084, 1378 |
| BcoDI | GTCTC | 2 cut(s) | 231, 382 |
| BcuI | ACTAGT | 1 cut(s) | 2053 |
| BfaI | CTAG | 5 cut(s) | 120, 738, 1145, 1710, 2054 |
| BfmI | CTRYAG | 1 cut(s) | 774 |
| BfuAI | ACCTGC | 1 cut(s) | 792 |
| BisI | GCNGC | 5 cut(s) | 712, 774, 962, 1902, 3151 |
| BlpI | GCTNAGC | 1 cut(s) | 1905 |
| BlsI | GCNGC | 5 cut(s) | 713, 775, 963, 1903, 3152 |
| BmcAI | AGTACT | 1 cut(s) | 1313 |
| Bme1390I | CCNGG | 3 cut(s) | 113, 846, 1947 |
| Bme18I | GGWCC | 5 cut(s) | 839, 1448, 2162, 2627, 2863 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 870, 2958 |
| BmeT110I | CYCGRG | 1 cut(s) | 228 |
| BmgBI | CACGTC | 1 cut(s) | 2506 |
| BmgT120I | GGNCC | 5 cut(s) | 839, 1448, 2162, 2627, 2863 |
| BmrFI | CCNGG | 3 cut(s) | 113, 846, 1947 |
| BmsI | GCATC | 7 cut(s) | 494, 1448, 1844, 2091, 2113, 2665, 2719 |
| BpiI | GAAGAC | 2 cut(s) | 55, 2718 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 72, 104 |
| BpmI | CTGGAG | 2 cut(s) | 828, 3269 |
| Bpu10I | CCTNAGC | 2 cut(s) | 965, 1843 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1905 |
| Bpu14I | TTCGAA | 1 cut(s) | 2046 |
| BpuEI | CTTGAG | 4 cut(s) | 193, 1187, 1652, 2222 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2513 |
| BsaI | GGTCTC | 1 cut(s) | 382 |
| BsaJI | CCNNGG | 3 cut(s) | 460, 845, 2488 |
| BsaWI | WCCGGW | 2 cut(s) | 1450, 2994 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 907, 937, 1295, 1325, 2633, 2663 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 228, 359, 851, 1072, 1127 |
| Bse1I | ACTGG | 3 cut(s) | 486, 856, 2092 |
| Bse3DI | GCAATG | 2 cut(s) | 369, 1704 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2513 |
| BseAI | TCCGGA | 1 cut(s) | 2994 |
| BseBI | CCWGG | 3 cut(s) | 113, 846, 1947 |
| BseDI | CCNNGG | 3 cut(s) | 460, 845, 2488 |
| BseGI | GGATG | 4 cut(s) | 2104, 2106, 2164, 2680 |
| BseJI | GATNNNNATC | 1 cut(s) | 2513 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 228, 359, 851, 1072, 1127 |
| BseMI | GCAATG | 2 cut(s) | 369, 1704 |
| BseMII | CTCAG | 6 cut(s) | 615, 956, 1706, 1730, 1857, 1919 |
| BseNI | ACTGG | 3 cut(s) | 486, 856, 2092 |
| BseRI | GAGGAG | 5 cut(s) | 519, 1225, 1418, 1547, 2948 |
| BseSI | GKGCMC | 1 cut(s) | 235 |
| BseXI | GCAGC | 5 cut(s) | 698, 760, 948, 1888, 3137 |
| BseYI | CCCAGC | 1 cut(s) | 3295 |
| BsgI | GTGCAG | 2 cut(s) | 925, 1838 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3368 |
| BshFI | GGCC | 6 cut(s) | 736, 1782, 1950, 2325, 3199, 3359 |
| BshNI | GGYRCC | 4 cut(s) | 232, 804, 1729, 2919 |
| BsiEI | CGRYCG | 1 cut(s) | 3368 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1253 |
| BsiHKCI | CYCGRG | 1 cut(s) | 228 |
| BsiSI | CCGG | 2 cut(s) | 1451, 2995 |
| BslFI | GGGAC | 7 cut(s) | 862, 1461, 2079, 2876, 2965, 3188, 3302 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 228, 359, 851, 1072, 1127 |
| BsmAI | GTCTC | 2 cut(s) | 231, 382 |
| BsmFI | GGGAC | 7 cut(s) | 862, 1461, 2079, 2876, 2965, 3188, 3302 |
| BsmI | GAATGC | 3 cut(s) | 595, 2026, 3335 |
| BsnI | GGCC | 6 cut(s) | 736, 1782, 1950, 2325, 3199, 3359 |
| Bso31I | GGTCTC | 1 cut(s) | 382 |
| BsoBI | CYCGRG | 1 cut(s) | 228 |
| Bsp119I | TTCGAA | 1 cut(s) | 2046 |
| Bsp1286I | GDGCHC | 2 cut(s) | 235, 1253 |
| Bsp13I | TCCGGA | 1 cut(s) | 2994 |
| Bsp1407I | TGTACA | 1 cut(s) | 1596 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1905 |
| BspACI | CCGC | 1 cut(s) | 2470 |
| BspANI | GGCC | 6 cut(s) | 736, 1782, 1950, 2325, 3199, 3359 |
| BspCNI | CTCAG | 6 cut(s) | 614, 957, 1705, 1731, 1856, 1918 |
| BspEI | TCCGGA | 1 cut(s) | 2994 |
| BspHI | TCATGA | 2 cut(s) | 558, 2929 |
| BspMAI | CTGCAG | 1 cut(s) | 778 |
| BspMI | ACCTGC | 1 cut(s) | 792 |
| BspT104I | TTCGAA | 1 cut(s) | 2046 |
| BspT107I | GGYRCC | 4 cut(s) | 232, 804, 1729, 2919 |
| BspTNI | GGTCTC | 1 cut(s) | 382 |
| BsrDI | GCAATG | 2 cut(s) | 369, 1704 |
| BsrGI | TGTACA | 1 cut(s) | 1596 |
| BsrI | ACTGG | 3 cut(s) | 486, 856, 2092 |
| BssECI | CCNNGG | 3 cut(s) | 460, 845, 2488 |
| BssNAI | GTATAC | 1 cut(s) | 3044 |
| BssT1I | CCWWGG | 2 cut(s) | 460, 2488 |
| Bst1107I | GTATAC | 1 cut(s) | 3044 |
| Bst2UI | CCWGG | 3 cut(s) | 113, 846, 1947 |
| Bst6I | CTCTTC | 3 cut(s) | 5, 2403, 2493 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2021 |
| BstAUI | TGTACA | 1 cut(s) | 1596 |
| BstBI | TTCGAA | 1 cut(s) | 2046 |
| BstDEI | CTNAG | 7 cut(s) | 601, 943, 965, 1692, 1739, 1843, 1905 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1070 |
| BstF5I | GGATG | 4 cut(s) | 2104, 2106, 2164, 2680 |
| BstHHI | GCGC | 1 cut(s) | 923 |
| BstMAI | GTCTC | 2 cut(s) | 231, 382 |
| BstMCI | CGRYCG | 1 cut(s) | 3368 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 725, 1141, 2021, 3222 |
| BstNI | CCWGG | 3 cut(s) | 113, 846, 1947 |
| BstNSI | RCATGY | 3 cut(s) | 580, 921, 1961 |
| BstSCI | CCNGG | 3 cut(s) | 111, 844, 1945 |
| BstSFI | CTRYAG | 1 cut(s) | 774 |
| BstSLI | GKGCMC | 1 cut(s) | 235 |
| BstV1I | GCAGC | 5 cut(s) | 698, 760, 948, 1888, 3137 |
| BstV2I | GAAGAC | 2 cut(s) | 55, 2718 |
| BstX2I | RGATCY | 5 cut(s) | 416, 1171, 2219, 2752, 2991 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1469, 3195 |
| BstYI | RGATCY | 5 cut(s) | 416, 1171, 2219, 2752, 2991 |
| BstZ17I | GTATAC | 1 cut(s) | 3044 |
| BsuRI | GGCC | 6 cut(s) | 736, 1782, 1950, 2325, 3199, 3359 |
| BtgZI | GCGATG | 1 cut(s) | 2833 |
| BtrI | CACGTC | 1 cut(s) | 2506 |
| BtsCI | GGATG | 4 cut(s) | 2104, 2106, 2164, 2680 |
| BtsI | GCAGTG | 2 cut(s) | 1430, 3232 |
| BtsIMutI | CAGTG | 5 cut(s) | 1316, 1430, 2520, 2602, 3232 |
| BveI | ACCTGC | 1 cut(s) | 792 |
| CaiI | CAGNNNCTG | 2 cut(s) | 851, 3231 |
| CciI | TCATGA | 2 cut(s) | 558, 2929 |
| CfoI | GCGC | 1 cut(s) | 923 |
| Cfr13I | GGNCC | 5 cut(s) | 839, 1448, 2162, 2627, 2863 |
| CseI | GACGC | 3 cut(s) | 498, 2727, 3092 |
| CsiI | ACCWGGT | 1 cut(s) | 111 |
| Csp6I | GTAC | 7 cut(s) | 1312, 1359, 1488, 1597, 1830, 2430, 3086 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 916, 951, 1419, 1454 |
| CviQI | GTAC | 7 cut(s) | 1312, 1359, 1488, 1597, 1830, 2430, 3086 |
| DdeI | CTNAG | 7 cut(s) | 601, 943, 965, 1692, 1739, 1843, 1905 |
| DraI | TTTAAA | 2 cut(s) | 756, 1326 |
| DraIII | CACNNNGTG | 1 cut(s) | 1751 |
| DriI | GACNNNNNGTC | 2 cut(s) | 870, 2958 |
| EaeI | YGGCCR | 2 cut(s) | 1780, 3197 |
| Eam1104I | CTCTTC | 3 cut(s) | 5, 2403, 2493 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 870, 2958 |
| EarI | CTCTTC | 3 cut(s) | 5, 2403, 2493 |
| Ecl136II | GAGCTC | 1 cut(s) | 1251 |
| Eco130I | CCWWGG | 2 cut(s) | 460, 2488 |
| Eco24I | GRGCYC | 1 cut(s) | 1253 |
| Eco31I | GGTCTC | 1 cut(s) | 382 |
| Eco32I | GATATC | 2 cut(s) | 367, 1015 |
| Eco47I | GGWCC | 5 cut(s) | 839, 1448, 2162, 2627, 2863 |
| Eco53kI | GAGCTC | 1 cut(s) | 1251 |
| Eco57I | CTGAAG | 2 cut(s) | 1562, 1595 |
| Eco88I | CYCGRG | 1 cut(s) | 228 |
| EcoICRI | GAGCTC | 1 cut(s) | 1251 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1070 |
| EcoO109I | RGGNCCY | 2 cut(s) | 839, 2863 |
| EcoRI | GAATTC | 3 cut(s) | 676, 2336, 3031 |
| EcoRII | CCWGG | 3 cut(s) | 111, 844, 1945 |
| EcoRV | GATATC | 2 cut(s) | 367, 1015 |
| EcoT14I | CCWWGG | 2 cut(s) | 460, 2488 |
| EcoT22I | ATGCAT | 1 cut(s) | 2106 |
| EcoT38I | GRGCYC | 1 cut(s) | 1253 |
| ErhI | CCWWGG | 2 cut(s) | 460, 2488 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2807, 2839 |
| FaqI | GGGAC | 7 cut(s) | 862, 1461, 2079, 2876, 2965, 3188, 3302 |
| FbaI | TGATCA | 2 cut(s) | 1084, 1378 |
| FblI | GTMKAC | 2 cut(s) | 538, 3043 |
| Fnu4HI | GCNGC | 5 cut(s) | 712, 774, 962, 1902, 3151 |
| FokI | GGATG | 4 cut(s) | 2091, 2113, 2171, 2687 |
| FriOI | GRGCYC | 1 cut(s) | 1253 |
| Fsp4HI | GCNGC | 5 cut(s) | 712, 774, 962, 1902, 3151 |
| FspBI | CTAG | 5 cut(s) | 120, 738, 1145, 1710, 2054 |
| GlaI | GCGC | 1 cut(s) | 922 |
| GluI | GCNGC | 5 cut(s) | 712, 774, 962, 1902, 3151 |
| GsaI | CCCAGC | 1 cut(s) | 3299 |
| GsuI | CTGGAG | 2 cut(s) | 828, 3269 |
| HaeIII | GGCC | 6 cut(s) | 736, 1782, 1950, 2325, 3199, 3359 |
| HapII | CCGG | 2 cut(s) | 1451, 2995 |
| HgaI | GACGC | 3 cut(s) | 498, 2727, 3092 |
| HhaI | GCGC | 1 cut(s) | 923 |
| Hin6I | GCGC | 1 cut(s) | 921 |
| HinP1I | GCGC | 1 cut(s) | 921 |
| HincII | GTYRAC | 2 cut(s) | 1063, 2173 |
| HindII | GTYRAC | 2 cut(s) | 1063, 2173 |
| HindIII | AAGCTT | 2 cut(s) | 2038, 2903 |
| HpaII | CCGG | 2 cut(s) | 1451, 2995 |
| HphI | GGTGA | 8 cut(s) | 374, 1253, 1274, 1400, 1577, 1648, 2370, 2507 |
| Hpy166II | GTNNAC | 9 cut(s) | 539, 553, 1063, 1599, 2173, 2270, 2821, 3016, 3044 |
| Hpy8I | GTNNAC | 9 cut(s) | 539, 553, 1063, 1599, 2173, 2270, 2821, 3016, 3044 |
| Hpy99I | CGWCG | 2 cut(s) | 145, 2880 |
| HpyCH4IV | ACGT | 6 cut(s) | 134, 1283, 1397, 1526, 2505, 2580 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 725, 1141, 2021, 3222 |
| HpyF3I | CTNAG | 7 cut(s) | 601, 943, 965, 1692, 1739, 1843, 1905 |
| HpySE526I | ACGT | 6 cut(s) | 134, 1283, 1397, 1526, 2505, 2580 |
| HspAI | GCGC | 1 cut(s) | 921 |
| KflI | GGGWCCC | 1 cut(s) | 2863 |
| Kpn2I | TCCGGA | 1 cut(s) | 2994 |
| Ksp22I | TGATCA | 2 cut(s) | 1084, 1378 |
| LmnI | GCTCC | 3 cut(s) | 506, 928, 1248 |
| Lsp1109I | GCAGC | 5 cut(s) | 698, 760, 948, 1888, 3137 |
| LweI | GCATC | 7 cut(s) | 494, 1448, 1844, 2091, 2113, 2665, 2719 |
| MabI | ACCWGGT | 1 cut(s) | 111 |
| MaeI | CTAG | 5 cut(s) | 120, 738, 1145, 1710, 2054 |
| MaeII | ACGT | 6 cut(s) | 134, 1283, 1397, 1526, 2505, 2580 |
| MaeIII | GTNAC | 9 cut(s) | 115, 145, 152, 876, 949, 1425, 1743, 2583, 3125 |
| MfeI | CAATTG | 3 cut(s) | 2403, 2547, 2689 |
| MflI | RGATCY | 5 cut(s) | 416, 1171, 2219, 2752, 2991 |
| MhlI | GDGCHC | 2 cut(s) | 235, 1253 |
| MlsI | TGGCCA | 2 cut(s) | 1782, 3199 |
| MluNI | TGGCCA | 2 cut(s) | 1782, 3199 |
| MlyI | GAGTC | 2 cut(s) | 1157, 2424 |
| MmeI | TCCRAC | 1 cut(s) | 1790 |
| Mox20I | TGGCCA | 2 cut(s) | 1782, 3199 |
| Mph1103I | ATGCAT | 1 cut(s) | 2106 |
| MroI | TCCGGA | 1 cut(s) | 2994 |
| MroXI | GAANNNNTTC | 3 cut(s) | 745, 2195, 2905 |
| MscI | TGGCCA | 2 cut(s) | 1782, 3199 |
| MslI | CAYNNNNRTG | 6 cut(s) | 563, 575, 581, 1386, 1467, 3081 |
| Msp20I | TGGCCA | 2 cut(s) | 1782, 3199 |
| MspA1I | CMGCKG | 2 cut(s) | 2965, 3299 |
| MspI | CCGG | 2 cut(s) | 1451, 2995 |
| MspR9I | CCNGG | 3 cut(s) | 113, 846, 1947 |
| MunI | CAATTG | 3 cut(s) | 2403, 2547, 2689 |
| Mva1269I | GAATGC | 3 cut(s) | 595, 2026, 3335 |
| MvaI | CCWGG | 3 cut(s) | 113, 846, 1947 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 725, 1141, 2021, 3222 |
| NmeAIII | GCCGAG | 1 cut(s) | 1232 |
| NmuCI | GTSAC | 3 cut(s) | 876, 949, 1743 |
| NsiI | ATGCAT | 1 cut(s) | 2106 |
| NspI | RCATGY | 3 cut(s) | 580, 921, 1961 |
| NspV | TTCGAA | 1 cut(s) | 2046 |
| OliI | CACNNNNGTG | 1 cut(s) | 1386 |
| PagI | TCATGA | 2 cut(s) | 558, 2929 |
| PaqCI | CACCTGC | 1 cut(s) | 792 |
| PctI | GAATGC | 3 cut(s) | 595, 2026, 3335 |
| PdmI | GAANNNNTTC | 3 cut(s) | 745, 2195, 2905 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 359, 851 |
| PkrI | GCNGC | 5 cut(s) | 713, 775, 963, 1903, 3152 |
| Ple19I | CGATCG | 1 cut(s) | 3368 |
| PleI | GAGTC | 2 cut(s) | 1156, 2423 |
| PpsI | GAGTC | 2 cut(s) | 1156, 2423 |
| PpuMI | RGGWCCY | 2 cut(s) | 839, 2863 |
| PsiI | TTATAA | 2 cut(s) | 1227, 2385 |
| Psp124BI | GAGCTC | 1 cut(s) | 1253 |
| Psp5II | RGGWCCY | 2 cut(s) | 839, 2863 |
| Psp6I | CCWGG | 3 cut(s) | 111, 844, 1945 |
| PspFI | CCCAGC | 1 cut(s) | 3295 |
| PspGI | CCWGG | 3 cut(s) | 111, 844, 1945 |
| PspPI | GGNCC | 5 cut(s) | 839, 1448, 2162, 2627, 2863 |
| PspPPI | RGGWCCY | 2 cut(s) | 839, 2863 |
| PstI | CTGCAG | 1 cut(s) | 778 |
| PstNI | CAGNNNCTG | 2 cut(s) | 851, 3231 |
| PsuI | RGATCY | 5 cut(s) | 416, 1171, 2219, 2752, 2991 |
| PvuI | CGATCG | 1 cut(s) | 3368 |
| PvuII | CAGCTG | 2 cut(s) | 2965, 3299 |
| RsaI | GTAC | 7 cut(s) | 1313, 1360, 1489, 1598, 1831, 2431, 3087 |
| RsaNI | GTAC | 7 cut(s) | 1312, 1359, 1488, 1597, 1830, 2430, 3086 |
| RseI | CAYNNNNRTG | 6 cut(s) | 563, 575, 581, 1386, 1467, 3081 |
| SacI | GAGCTC | 1 cut(s) | 1253 |
| SatI | GCNGC | 5 cut(s) | 712, 774, 962, 1902, 3151 |
| Sau96I | GGNCC | 5 cut(s) | 839, 1448, 2162, 2627, 2863 |
| ScaI | AGTACT | 1 cut(s) | 1313 |
| SchI | GAGTC | 2 cut(s) | 1157, 2424 |
| ScrFI | CCNGG | 3 cut(s) | 113, 846, 1947 |
| SduI | GDGCHC | 2 cut(s) | 235, 1253 |
| SexAI | ACCWGGT | 1 cut(s) | 111 |
| SfaNI | GCATC | 7 cut(s) | 494, 1448, 1844, 2091, 2113, 2665, 2719 |
| SfcI | CTRYAG | 1 cut(s) | 774 |
| SfuI | TTCGAA | 1 cut(s) | 2046 |
| SinI | GGWCC | 5 cut(s) | 839, 1448, 2162, 2627, 2863 |
| SmiI | ATTTAAAT | 1 cut(s) | 756 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 563, 575, 581, 1386, 1467, 3081 |
| SmlI | CTYRAG | 4 cut(s) | 208, 1166, 1667, 2201 |
| SmoI | CTYRAG | 4 cut(s) | 208, 1166, 1667, 2201 |
| SpeI | ACTAGT | 1 cut(s) | 2053 |
| SsiI | CCGC | 1 cut(s) | 2470 |
| SspI | AATATT | 3 cut(s) | 934, 1824, 3209 |
| SspMI | CTAG | 5 cut(s) | 120, 738, 1145, 1710, 2054 |
| SstI | GAGCTC | 1 cut(s) | 1253 |
| StyD4I | CCNGG | 3 cut(s) | 111, 844, 1945 |
| StyI | CCWWGG | 2 cut(s) | 460, 2488 |
| SwaI | ATTTAAAT | 1 cut(s) | 756 |
| TaiI | ACGT | 6 cut(s) | 137, 1286, 1400, 1529, 2508, 2583 |
| TaqI | TCGA | 8 cut(s) | 140, 488, 825, 1370, 1954, 2046, 2279, 3368 |
| TaqII | GACCGA | 2 cut(s) | 49, 2644 |
| TatI | WGTACW | 5 cut(s) | 1311, 1358, 1596, 1829, 2429 |
| TscAI | CASTG | 5 cut(s) | 1323, 1437, 2527, 2609, 3232 |
| TseFI | GTSAC | 3 cut(s) | 876, 949, 1743 |
| TseI | GCWGC | 5 cut(s) | 711, 773, 961, 1901, 3150 |
| Tsp45I | GTSAC | 3 cut(s) | 876, 949, 1743 |
| TspGWI | ACGGA | 3 cut(s) | 1874, 2097, 2262 |
| TspRI | CASTG | 5 cut(s) | 1323, 1437, 2527, 2609, 3232 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 359, 851 |
| VpaK11BI | GGWCC | 5 cut(s) | 839, 1448, 2162, 2627, 2863 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1070 |
| XceI | RCATGY | 3 cut(s) | 580, 921, 1961 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 31 |
| XmiI | GTMKAC | 2 cut(s) | 538, 3043 |
| XmnI | GAANNNNTTC | 3 cut(s) | 745, 2195, 2905 |
| XspI | CTAG | 5 cut(s) | 120, 738, 1145, 1710, 2054 |
| ZrmI | AGTACT | 1 cut(s) | 1313 |
| Zsp2I | ATGCAT | 1 cut(s) | 2106 |