MD08G1078100.v1.1

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000279
Physical Location & Seq
Forward (+)
6492287 .. 6493157
871 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1078100.v1.1.491

Sequence Viewer

Length: 609 bp
ATGAACATGACAACAACTGTTCACGTATGGAAAGCTTTGAACTCAAAAGGGGCAAATACAAGTTTAACTAAAAACTTGCTGCAACCGCAAGCCAATTCATCACAAAATTCTTGTTCAATTTGCTTTGACAACGAAAAATGCTACCTATCTGCTACATTTCGTGCAATGTGCTCTGATCTAAATGATTCCCAAAAAGCTGCAGTTTTGAATTGTATCAGTTTAAGTAAATGCAACCACTGTAATACCATAAAACTAATATGGGGACCTGCTGGTACTGGAAAAACGAAGACAGTTGGTATGTCACTCTTTGCCCTGGTTAAATTGAAGTGCAGAATATTAAAATGTGCTCCAACCAATATTGCTGTGTTAGAAGTAACAGCACGCATACTGAGATTGGTAAATCAGTCACTTGATTATGGTATGTACGGGCTTGGGGATATAATTCTATTTAGGAATGAGGAGAGGATGAAGATTCATGATCATGATGACCTTGTTGATGTATTTCTTGATTATCATACTAAAATTCTGGCCGAGTGTTTTGCCCCTTTGAGTGGATGGAAACATCGGTTAGCATCAATGATTGATTTACTTGAGGATCCAAATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

203

Amino Acids

22.5

Weight (kDa)

8.31

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_11 PF13086 59 - 134 9.9e-13 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 274
AciI CCGC 1 cut(s) 86
AclWI GGATC 2 cut(s) 590, 603
AcoI YGGCCR 1 cut(s) 528
AcsI RAATTY 2 cut(s) 106, 522
AfaI GTAC 2 cut(s) 274, 425
AfiI CCNNNNNNNGG 1 cut(s) 551
AgsI TTSAA 4 cut(s) 40, 117, 208, 325
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 2 cut(s) 35, 197
AluI AGCT 2 cut(s) 35, 197
Alw21I GWGCWC 2 cut(s) 173, 349
AlwI GGATC 2 cut(s) 590, 603
AoxI GGCC 1 cut(s) 528
ApeKI GCWGC 2 cut(s) 79, 197
ApoI RAATTY 2 cut(s) 106, 522
AspS9I GGNCC 1 cut(s) 263
AvaII GGWCC 1 cut(s) 263
BamHI GGATCC 1 cut(s) 595
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 2 cut(s) 173, 349
BbvI GCAGC 2 cut(s) 66, 184
BccI CCATC 1 cut(s) 549
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciT130I CCWGG 1 cut(s) 314
BclI TGATCA 1 cut(s) 478
BfmI CTRYAG 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 274
BisI GCNGC 2 cut(s) 80, 198
BlsI GCNGC 2 cut(s) 81, 199
Bme1390I CCNGG 1 cut(s) 314
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 264, 597
BmrFI CCNGG 1 cut(s) 314
BmsI GCATC 1 cut(s) 581
BpiI GAAGAC 1 cut(s) 293
BsaAI YACGTR 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 312
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 2 cut(s) 471, 560
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 473
BseXI GCAGC 2 cut(s) 66, 184
BsgI GTGCAG 1 cut(s) 349
BshFI GGCC 1 cut(s) 530
BsiHKAI GWGCWC 2 cut(s) 173, 349
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 551
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 530
Bsp1286I GDGCHC 2 cut(s) 173, 349
Bsp143I GATC 3 cut(s) 175, 478, 595
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 530
BspCNI CTCAG 1 cut(s) 381
BspHI TCATGA 2 cut(s) 475, 481
BspLI GGNNCC 2 cut(s) 264, 597
BspMAI CTGCAG 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 2 cut(s) 590, 603
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 3 cut(s) 175, 478, 595
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 3 cut(s) 19, 239, 292
BstBAI YACGTR 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 90, 382
BstDEI CTNAG 1 cut(s) 389
BstF5I GGATG 2 cut(s) 471, 560
BstKTI GATC 3 cut(s) 178, 481, 598
BstMBI GATC 3 cut(s) 175, 478, 595
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 312
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 66, 184
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BsuRI GGCC 1 cut(s) 530
BtsCI GGATG 2 cut(s) 471, 560
BtsIMutI CAGTG 1 cut(s) 235
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 2 cut(s) 90, 382
CciI TCATGA 2 cut(s) 475, 481
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 273, 424
CviAII CATG 3 cut(s) 7, 476, 482
CviJI RGCY 5 cut(s) 35, 92, 197, 430, 530
CviKI_1 RGCY 5 cut(s) 35, 92, 197, 430, 530
CviQI GTAC 2 cut(s) 273, 424
DdeI CTNAG 1 cut(s) 389
DpnI GATC 3 cut(s) 177, 480, 597
DpnII GATC 3 cut(s) 175, 478, 595
EaeI YGGCCR 1 cut(s) 528
Eco47I GGWCC 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 312
FaeI CATG 3 cut(s) 10, 479, 485
FaqI GGGAC 1 cut(s) 276
FatI CATG 3 cut(s) 6, 475, 481
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 2 cut(s) 80, 198
FokI GGATG 2 cut(s) 478, 567
Fsp4HI GCNGC 2 cut(s) 80, 198
GluI GCNGC 2 cut(s) 80, 198
HaeIII GGCC 1 cut(s) 530
Hin1II CATG 3 cut(s) 10, 479, 485
HindIII AAGCTT 1 cut(s) 33
HinfI GANTC 2 cut(s) 185, 472
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 3 cut(s) 476, 482, 506
Hpy8I GTNNAC 1 cut(s) 22
HpyCH4III ACNGT 3 cut(s) 19, 239, 292
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 5 cut(s) 82, 164, 200, 231, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 3 cut(s) 10, 479, 485
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 3 cut(s) 175, 478, 595
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 6 cut(s) 255, 261, 279, 299, 326, 512
Lsp1109I GCAGC 2 cut(s) 66, 184
LweI GCATC 1 cut(s) 581
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 3 cut(s) 300, 373, 405
MalI GATC 3 cut(s) 177, 480, 597
MboI GATC 3 cut(s) 175, 478, 595
MboII GAAGA 2 cut(s) 298, 481
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 2 cut(s) 173, 349
MluCI AATT 7 cut(s) 94, 106, 117, 208, 320, 441, 522
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 3 cut(s) 451, 456, 586
MseI TTAA 4 cut(s) 65, 221, 318, 338
MslI CAYNNNNRTG 1 cut(s) 480
MspR9I CCNGG 1 cut(s) 314
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 3 cut(s) 175, 478, 595
NlaIII CATG 3 cut(s) 10, 479, 485
NlaIV GGNNCC 2 cut(s) 264, 597
NmeAIII GCCGAG 1 cut(s) 556
NmuCI GTSAC 2 cut(s) 300, 405
PagI TCATGA 2 cut(s) 475, 481
PfeI GAWTC 2 cut(s) 185, 472
PkrI GCNGC 2 cut(s) 81, 199
Ppu21I YACGTR 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 264, 597
PspPI GGNCC 1 cut(s) 263
PspPPI RGGWCCY 1 cut(s) 263
PstI CTGCAG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 2 cut(s) 274, 425
RsaNI GTAC 2 cut(s) 273, 424
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 4 cut(s) 65, 221, 318, 338
SatI GCNGC 2 cut(s) 80, 198
Sau3AI GATC 3 cut(s) 175, 478, 595
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 314
SduI GDGCHC 2 cut(s) 173, 349
SetI ASST 6 cut(s) 27, 37, 147, 199, 268, 492
SfaNI GCATC 1 cut(s) 581
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
Sse9I AATT 7 cut(s) 94, 106, 117, 208, 320, 441, 522
SsiI CCGC 1 cut(s) 86
SspI AATATT 2 cut(s) 336, 358
StyD4I CCNGG 1 cut(s) 312
TaaI ACNGT 3 cut(s) 19, 239, 292
TaiI ACGT 1 cut(s) 27
TasI AATT 7 cut(s) 94, 106, 117, 208, 320, 441, 522
TfiI GAWTC 2 cut(s) 185, 472
Tru1I TTAA 4 cut(s) 65, 221, 318, 338
Tru9I TTAA 4 cut(s) 65, 221, 318, 338
TscAI CASTG 1 cut(s) 242
TseFI GTSAC 2 cut(s) 300, 405
TseI GCWGC 2 cut(s) 79, 197
Tsp45I GTSAC 2 cut(s) 300, 405
TspDTI ATGAA 4 cut(s) 17, 87, 464, 482
TspRI CASTG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 2 cut(s) 106, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.