Rroxscaffold_1G00034600

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000279
Physical Location & Seq
Forward (+)
50235375 .. 50237951
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00034600.1

Sequence Viewer

Length: 1086 bp
ATGTCGTCGGAGCTTTCAACCATCAAAGCTTGCTTGCGAGTAAGTGCTGATTTTGGAAGAAGTTTGTTTGGAAGGCTGGCAAAGTTGGGACACAAGAAGCTGGTACACAATGTCCAGTACAGGATGCATCCATCCATCAGTTTATTTCCAAAAAGGGAGTTCTACGACAACCAGATAGTAGATGGTCCAAATGTCATAGAAAAAAGCTATGAGAGTCTCTGGGATAGTAGCAAGCCTTTAAAAAGAATTCATTGGAACAAAGAAGATACAAGGCTCAAGTTTATGCAATTCAAGATACTCAGAAAATATACTGAAACTTCTGATACTGGATTCTCTGTAAGTGTGCAATCTGTTGATGGGTTCCAAGCTGGTGAAGAAGATGTGATAATTATGTCTACTGTCCGATGTAATGGGAACGGGTCAGTTGGTTTCTTGTCGAACCAGCAAAGAGCAATTGTTGCCTTAACACATGCAAGGTGTTGCCTTTGGATATTGGGGAATGCGTCAACTTTGATTGCTAGTGACTCTGTTTGGAAGAAGCTAGTCCTTGATGCCAAGAAACGGAACCGTTTTTATAATGGTGATGAAGACAGCAACTCGGCTCAGGCTATTACAGCTGCCCTGCTGGAGCTTGACCAACTGCATTCTCTGCTTAATATCGACTCTCTACTGTTCAAAAACGCTATATGGAAGGTTTGCTTCACTCATGACTTTTTGAACTCCATAACAAAAATTAAAGACACTGTGATTCTTTGCGAAGTGCTTGCGTTCTTAACCAAGCTTTCAAGTGGATGGCACCGACCTCTTGAGGACAAAGGAACTTTAGTGTATGATGGGACGTCTGCTCAACTGTTAGAGAAGTATAAAATCAAAGGGAACTTGAATCTCATCTGTGACAGAGAATTAATTGAAGATAGGGAAGAATCAGATAACAGGCAGATGACTGAACCTGATAAGCAAATAGTTGCCAAGGTGACAGCTTACCTGTCAAAGTGCATCAAGGACTTCGAGAATGCTGCTGTGATAAATAAGGACAAGTTTATGTTTTCCGGCATTATGTATTTATATGCACTTAGGCAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

361

Amino Acids

41.1

Weight (kDa)

8.71

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_12 PF13087 19 - 85 2.3e-12 AAA domain
AAA_12 PF13087 96 - 168 3.7e-18 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AatII GACGTC 1 cut(s) 842
AccB1I GGYRCC 1 cut(s) 795
AccI GTMKAC 1 cut(s) 395
AcsI RAATTY 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 839
AfaI GTAC 2 cut(s) 105, 119
AfiI CCNNNNNNNGG 1 cut(s) 561
AgsI TTSAA 7 cut(s) 18, 292, 676, 718, 786, 883, 911
Alw26I GTCTC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 617, 1016
ApoI RAATTY 1 cut(s) 246
AseI ATTAAT 1 cut(s) 905
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 3 cut(s) 383, 593, 985
AvaII GGWCC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 795
BbsI GAAGAC 1 cut(s) 594
BbvI GCAGC 2 cut(s) 604, 1003
BccI CCATC 7 cut(s) 29, 139, 143, 176, 350, 786, 827
BcgI CGANNNNNNTGC 4 cut(s) 746, 780, 998, 1032
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 2 cut(s) 519, 542
BisI GCNGC 2 cut(s) 618, 1017
BlsI GCNGC 2 cut(s) 619, 1018
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 3 cut(s) 362, 566, 797
BmsI GCATC 4 cut(s) 114, 136, 541, 1005
BpiI GAAGAC 1 cut(s) 594
BpmI CTGGAG 1 cut(s) 647
Bpu10I CCTNAGC 1 cut(s) 603
BpuEI CTTGAG 2 cut(s) 260, 827
BsaHI GRCGYC 1 cut(s) 839
BsaJI CCNNGG 1 cut(s) 969
Bsc4I CCNNNNNNNGG 1 cut(s) 561
Bse1I ACTGG 2 cut(s) 115, 331
Bse3DI GCAATG 1 cut(s) 1085
BseDI CCNNGG 1 cut(s) 969
BseGI GGATG 4 cut(s) 127, 129, 131, 797
BseLI CCNNNNNNNGG 1 cut(s) 561
BseMI GCAATG 1 cut(s) 1085
BseMII CTCAG 2 cut(s) 313, 617
BseNI ACTGG 2 cut(s) 115, 331
BseXI GCAGC 2 cut(s) 604, 1003
BshNI GGYRCC 1 cut(s) 795
BsiSI CCGG 1 cut(s) 1050
BslFI GGGAC 2 cut(s) 102, 850
BslI CCNNNNNNNGG 1 cut(s) 561
BsmAI GTCTC 1 cut(s) 221
BsmFI GGGAC 2 cut(s) 102, 850
BsmI GAATGC 3 cut(s) 505, 643, 1018
BspCNI CTCAG 2 cut(s) 312, 616
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 3 cut(s) 362, 566, 797
BspT107I GGYRCC 1 cut(s) 795
BsrDI GCAATG 1 cut(s) 1085
BsrI ACTGG 2 cut(s) 115, 331
BssECI CCNNGG 1 cut(s) 969
BssNI GRCGYC 1 cut(s) 839
BssT1I CCWWGG 1 cut(s) 969
Bst4CI ACNGT 5 cut(s) 400, 569, 672, 745, 852
BstACI GRCGYC 1 cut(s) 839
BstAPI GCANNNNNTGC 2 cut(s) 458, 649
BstC8I GCNNGC 5 cut(s) 31, 35, 78, 233, 765
BstDEI CTNAG 3 cut(s) 299, 603, 1073
BstF5I GGATG 4 cut(s) 127, 129, 131, 797
BstMAI GTCTC 1 cut(s) 221
BstMWI GCNNNNNNNGC 3 cut(s) 458, 614, 649
BstNSI RCATGY 1 cut(s) 473
BstV1I GCAGC 2 cut(s) 604, 1003
BstV2I GAAGAC 1 cut(s) 594
BtsCI GGATG 4 cut(s) 127, 129, 131, 797
BtsIMutI CAGTG 1 cut(s) 741
Cac8I GCNNGC 5 cut(s) 31, 35, 78, 233, 765
CciI TCATGA 1 cut(s) 706
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 492
Csp6I GTAC 2 cut(s) 104, 118
CviAII CATG 2 cut(s) 470, 707
CviQI GTAC 2 cut(s) 104, 118
DdeI CTNAG 3 cut(s) 299, 603, 1073
DraI TTTAAA 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 969
Eco47I GGWCC 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 969
EcoT22I ATGCAT 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 969
FaeI CATG 2 cut(s) 473, 710
FalI AAGNNNNNCTT 2 cut(s) 683, 715
FaqI GGGAC 2 cut(s) 102, 850
FatI CATG 2 cut(s) 469, 706
FblI GTMKAC 1 cut(s) 395
Fnu4HI GCNGC 2 cut(s) 618, 1017
FokI GGATG 4 cut(s) 114, 118, 136, 804
Fsp4HI GCNGC 2 cut(s) 618, 1017
FspBI CTAG 2 cut(s) 519, 542
GluI GCNGC 2 cut(s) 618, 1017
GsuI CTGGAG 1 cut(s) 647
HapII CCGG 1 cut(s) 1050
HgaI GACGC 1 cut(s) 492
Hin1I GRCGYC 1 cut(s) 839
Hin1II CATG 2 cut(s) 473, 710
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HindIII AAGCTT 2 cut(s) 27, 779
HinfI GANTC 7 cut(s) 214, 330, 524, 662, 748, 883, 923
HpaII CCGG 1 cut(s) 1050
HphI GGTGA 3 cut(s) 383, 593, 985
Hpy166II GTNNAC 3 cut(s) 106, 396, 507
Hpy188I TCNGA 5 cut(s) 10, 302, 322, 404, 928
Hpy188III TCNNGA 4 cut(s) 292, 707, 806, 1009
Hpy8I GTNNAC 3 cut(s) 106, 396, 507
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 66, 685
HpyCH4III ACNGT 5 cut(s) 400, 569, 672, 745, 852
HpyCH4IV ACGT 1 cut(s) 839
HpyCH4V TGCA 7 cut(s) 127, 286, 346, 473, 643, 996, 1070
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 614, 649
HpyF3I CTNAG 3 cut(s) 299, 603, 1073
HpySE526I ACGT 1 cut(s) 839
Hsp92I GRCGYC 1 cut(s) 839
Hsp92II CATG 2 cut(s) 473, 710
LmnI GCTCC 2 cut(s) 10, 628
Lsp1109I GCAGC 2 cut(s) 604, 1003
LweI GCATC 4 cut(s) 114, 136, 541, 1005
MaeI CTAG 2 cut(s) 519, 542
MaeII ACGT 1 cut(s) 839
MaeIII GTNAC 3 cut(s) 521, 893, 973
MboII GAAGA 8 cut(s) 69, 275, 386, 389, 547, 599, 923, 932
MfeI CAATTG 1 cut(s) 453
MluCI AATT 7 cut(s) 246, 287, 387, 453, 732, 902, 906
MlyI GAGTC 3 cut(s) 223, 518, 656
MnlI CCTC 2 cut(s) 802, 813
Mph1103I ATGCAT 1 cut(s) 129
MseI TTAA 7 cut(s) 239, 464, 654, 735, 773, 905, 1084
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 1 cut(s) 1050
MunI CAATTG 1 cut(s) 453
Mva1269I GAATGC 3 cut(s) 505, 643, 1018
MwoI GCNNNNNNNGC 3 cut(s) 458, 614, 649
NlaIII CATG 2 cut(s) 473, 710
NlaIV GGNNCC 3 cut(s) 362, 566, 797
NmeAIII GCCGAG 1 cut(s) 578
NmuCI GTSAC 3 cut(s) 521, 893, 973
NsiI ATGCAT 1 cut(s) 129
NspI RCATGY 1 cut(s) 473
PagI TCATGA 1 cut(s) 706
PctI GAATGC 3 cut(s) 505, 643, 1018
PfeI GAWTC 4 cut(s) 330, 748, 883, 923
PkrI GCNGC 2 cut(s) 619, 1018
PleI GAGTC 3 cut(s) 222, 518, 656
PpsI GAGTC 3 cut(s) 222, 518, 656
PshBI ATTAAT 1 cut(s) 905
PsiI TTATAA 1 cut(s) 576
PspN4I GGNNCC 3 cut(s) 362, 566, 797
PspPI GGNCC 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 2 cut(s) 105, 119
RsaNI GTAC 2 cut(s) 104, 118
SaqAI TTAA 7 cut(s) 239, 464, 654, 735, 773, 905, 1084
SatI GCNGC 2 cut(s) 618, 1017
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 3 cut(s) 223, 518, 656
SfaNI GCATC 4 cut(s) 114, 136, 541, 1005
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 275, 806
SmoI CTYRAG 2 cut(s) 275, 806
Sse9I AATT 7 cut(s) 246, 287, 387, 453, 732, 902, 906
SspMI CTAG 2 cut(s) 519, 542
StyI CCWWGG 1 cut(s) 969
TaaI ACNGT 5 cut(s) 400, 569, 672, 745, 852
TaiI ACGT 1 cut(s) 842
TaqI TCGA 3 cut(s) 437, 660, 1008
TasI AATT 7 cut(s) 246, 287, 387, 453, 732, 902, 906
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 4 cut(s) 330, 748, 883, 923
Tru1I TTAA 7 cut(s) 239, 464, 654, 735, 773, 905, 1084
Tru9I TTAA 7 cut(s) 239, 464, 654, 735, 773, 905, 1084
TscAI CASTG 1 cut(s) 748
TseFI GTSAC 3 cut(s) 521, 893, 973
TseI GCWGC 2 cut(s) 617, 1016
Tsp45I GTSAC 3 cut(s) 521, 893, 973
TspDTI ATGAA 2 cut(s) 239, 600
TspGWI ACGGA 1 cut(s) 577
TspRI CASTG 1 cut(s) 748
VpaK11BI GGWCC 1 cut(s) 185
VspI ATTAAT 1 cut(s) 905
XapI RAATTY 1 cut(s) 246
XceI RCATGY 1 cut(s) 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 395
XspI CTAG 2 cut(s) 519, 542
ZraI GACGTC 1 cut(s) 840
Zsp2I ATGCAT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.