AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1227 |
| AccB1I | GGYRCC | 2 cut(s) | 232, 2955 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 347, 851, 985, 1127 |
| AciI | CCGC | 5 cut(s) | 1257, 1869, 2506, 2828, 2972 |
| AcoI | YGGCCR | 1 cut(s) | 3233 |
| AcuI | CTGAAG | 1 cut(s) | 1613 |
| AcvI | CACGTG | 1 cut(s) | 2630 |
| AcyI | GRCGYC | 1 cut(s) | 2956 |
| AdeI | CACNNNGTG | 1 cut(s) | 744 |
| AfaI | GTAC | 6 cut(s) | 579, 1616, 1867, 2467, 2622, 3081 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 229, 347, 820, 851, 970, 985, 1127 |
| AflIII | ACRYGT | 5 cut(s) | 308, 580, 1109, 2627, 3076 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 870, 1123, 2994 |
| AhlI | ACTAGT | 1 cut(s) | 2089 |
| AjnI | CCWGG | 3 cut(s) | 222, 844, 1981 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1823, 1855 |
| AleI | CACNNNNGTG | 1 cut(s) | 3403 |
| Alw21I | GWGCWC | 1 cut(s) | 1256 |
| Alw26I | GTCTC | 5 cut(s) | 125, 370, 2766, 3308, 3309 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 851 |
| Ama87I | CYCGRG | 1 cut(s) | 1685 |
| AoxI | GGCC | 4 cut(s) | 734, 1984, 3233, 3384 |
| ApeKI | GCWGC | 3 cut(s) | 773, 1937, 3186 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 2076, 2108, 2415, 2447, 3137, 3169 |
| AseI | ATTAAT | 2 cut(s) | 1533, 1677 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1737, 2231 |
| AspLEI | GCGC | 2 cut(s) | 923, 2958 |
| AspS9I | GGNCC | 4 cut(s) | 735, 839, 1747, 2198 |
| AsuHPI | GGTGA | 7 cut(s) | 362, 803, 1256, 1502, 1595, 2406, 2543 |
| AsuII | TTCGAA | 1 cut(s) | 2082 |
| AvaI | CYCGRG | 1 cut(s) | 1685 |
| AvaII | GGWCC | 3 cut(s) | 839, 1747, 2198 |
| BalI | TGGCCA | 1 cut(s) | 3235 |
| BamHI | GGATCC | 2 cut(s) | 1171, 2255 |
| BanI | GGYRCC | 2 cut(s) | 232, 2955 |
| BanII | GRGCYC | 1 cut(s) | 1256 |
| BbrPI | CACGTG | 1 cut(s) | 2630 |
| BbsI | GAAGAC | 1 cut(s) | 55 |
| Bbv12I | GWGCWC | 1 cut(s) | 1256 |
| BbvI | GCAGC | 3 cut(s) | 760, 1924, 3173 |
| BceAI | ACGGC | 1 cut(s) | 974 |
| BciT130I | CCWGG | 3 cut(s) | 224, 846, 1983 |
| BclI | TGATCA | 1 cut(s) | 1084 |
| BcoDI | GTCTC | 5 cut(s) | 125, 370, 2766, 3308, 3309 |
| BcuI | ACTAGT | 1 cut(s) | 2089 |
| BfaI | CTAG | 4 cut(s) | 729, 1145, 1728, 2090 |
| BfmI | CTRYAG | 1 cut(s) | 774 |
| BfoI | RGCGCY | 1 cut(s) | 2959 |
| BisI | GCNGC | 3 cut(s) | 774, 1938, 3187 |
| BlpI | GCTNAGC | 1 cut(s) | 1941 |
| BlsI | GCNGC | 3 cut(s) | 775, 1939, 3188 |
| Bme1390I | CCNGG | 3 cut(s) | 224, 846, 1983 |
| Bme18I | GGWCC | 3 cut(s) | 839, 1747, 2198 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 870, 1123, 2994 |
| BmeT110I | CYCGRG | 1 cut(s) | 1685 |
| BmgT120I | GGNCC | 4 cut(s) | 735, 839, 1747, 2198 |
| BmiI | GGNNCC | 6 cut(s) | 234, 840, 962, 1173, 2257, 2957 |
| BmrFI | CCNGG | 3 cut(s) | 224, 846, 1983 |
| BmsI | GCATC | 8 cut(s) | 488, 701, 1466, 1880, 2149, 2701, 3350, 3371 |
| BpiI | GAAGAC | 1 cut(s) | 55 |
| BpmI | CTGGAG | 2 cut(s) | 828, 3296 |
| Bpu10I | CCTNAGC | 1 cut(s) | 717 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1941 |
| Bpu14I | TTCGAA | 1 cut(s) | 2082 |
| BpuEI | CTTGAG | 8 cut(s) | 149, 193, 203, 1091, 1187, 1439, 2258, 3224 |
| BsaAI | YACGTR | 2 cut(s) | 581, 2630 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2549 |
| BsaHI | GRCGYC | 1 cut(s) | 2956 |
| BsaI | GGTCTC | 1 cut(s) | 370 |
| BsaJI | CCNNGG | 4 cut(s) | 222, 845, 2524, 3401 |
| BsaWI | WCCGGW | 1 cut(s) | 3389 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 907, 937, 1427, 1457 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 229, 347, 820, 851, 970, 985, 1127 |
| Bse1I | ACTGG | 7 cut(s) | 341, 525, 979, 1917, 2128, 2491, 3236 |
| Bse3DI | GCAATG | 2 cut(s) | 357, 1722 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2549 |
| BseBI | CCWGG | 3 cut(s) | 224, 846, 1983 |
| BseDI | CCNNGG | 4 cut(s) | 222, 845, 2524, 3401 |
| BseGI | GGATG | 5 cut(s) | 716, 1041, 2140, 2545, 3362 |
| BseJI | GATNNNNATC | 1 cut(s) | 2549 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 229, 347, 820, 851, 970, 985, 1127 |
| BseMI | GCAATG | 2 cut(s) | 357, 1722 |
| BseMII | CTCAG | 8 cut(s) | 615, 708, 956, 1763, 1955, 2043, 2777, 3302 |
| BseNI | ACTGG | 7 cut(s) | 341, 525, 979, 1917, 2128, 2491, 3236 |
| BseRI | GAGGAG | 3 cut(s) | 342, 1436, 1565 |
| BseXI | GCAGC | 3 cut(s) | 760, 1924, 3173 |
| BsgI | GTGCAG | 2 cut(s) | 333, 925 |
| BshFI | GGCC | 4 cut(s) | 736, 1986, 3235, 3386 |
| BshNI | GGYRCC | 2 cut(s) | 232, 2955 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1256 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1685 |
| BsiSI | CCGG | 1 cut(s) | 3390 |
| BslFI | GGGAC | 3 cut(s) | 205, 2115, 3224 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 229, 347, 820, 851, 970, 985, 1127 |
| BsmAI | GTCTC | 5 cut(s) | 125, 370, 2766, 3308, 3309 |
| BsmBI | CGTCTC | 2 cut(s) | 125, 3309 |
| BsmFI | GGGAC | 3 cut(s) | 205, 2115, 3224 |
| BsmI | GAATGC | 2 cut(s) | 2062, 2142 |
| BsnI | GGCC | 4 cut(s) | 736, 1986, 3235, 3386 |
| Bso31I | GGTCTC | 1 cut(s) | 370 |
| BsoBI | CYCGRG | 1 cut(s) | 1685 |
| Bsp119I | TTCGAA | 1 cut(s) | 2082 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1256 |
| Bsp1407I | TGTACA | 2 cut(s) | 1614, 3079 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1941 |
| BspACI | CCGC | 5 cut(s) | 1257, 1869, 2506, 2828, 2972 |
| BspANI | GGCC | 4 cut(s) | 736, 1986, 3235, 3386 |
| BspCNI | CTCAG | 8 cut(s) | 614, 709, 957, 1764, 1954, 2044, 2776, 3303 |
| BspHI | TCATGA | 2 cut(s) | 558, 2965 |
| BspLI | GGNNCC | 6 cut(s) | 234, 840, 962, 1173, 2257, 2957 |
| BspMAI | CTGCAG | 1 cut(s) | 778 |
| BspT104I | TTCGAA | 1 cut(s) | 2082 |
| BspT107I | GGYRCC | 2 cut(s) | 232, 2955 |
| BspTNI | GGTCTC | 1 cut(s) | 370 |
| BsrDI | GCAATG | 2 cut(s) | 357, 1722 |
| BsrGI | TGTACA | 2 cut(s) | 1614, 3079 |
| BsrI | ACTGG | 7 cut(s) | 341, 525, 979, 1917, 2128, 2491, 3236 |
| BssECI | CCNNGG | 4 cut(s) | 222, 845, 2524, 3401 |
| BssNI | GRCGYC | 1 cut(s) | 2956 |
| BssT1I | CCWWGG | 2 cut(s) | 2524, 3401 |
| Bst2UI | CCWGG | 3 cut(s) | 224, 846, 1983 |
| Bst6I | CTCTTC | 1 cut(s) | 2529 |
| BstACI | GRCGYC | 1 cut(s) | 2956 |
| BstAUI | TGTACA | 2 cut(s) | 1614, 3079 |
| BstBAI | YACGTR | 2 cut(s) | 581, 2630 |
| BstBI | TTCGAA | 1 cut(s) | 2082 |
| BstC8I | GCNNGC | 2 cut(s) | 1852, 3324 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 227 |
| BstF5I | GGATG | 5 cut(s) | 716, 1041, 2140, 2545, 3362 |
| BstH2I | RGCGCY | 1 cut(s) | 2959 |
| BstHHI | GCGC | 2 cut(s) | 923, 2958 |
| BstMAI | GTCTC | 5 cut(s) | 125, 370, 2766, 3308, 3309 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 2057 |
| BstNI | CCWGG | 3 cut(s) | 224, 846, 1983 |
| BstNSI | RCATGY | 5 cut(s) | 312, 921, 1113, 1997, 3080 |
| BstSCI | CCNGG | 3 cut(s) | 222, 844, 1981 |
| BstSFI | CTRYAG | 1 cut(s) | 774 |
| BstV1I | GCAGC | 3 cut(s) | 760, 1924, 3173 |
| BstV2I | GAAGAC | 1 cut(s) | 55 |
| BstX2I | RGATCY | 4 cut(s) | 404, 1171, 2255, 2788 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3231 |
| BstYI | RGATCY | 4 cut(s) | 404, 1171, 2255, 2788 |
| BsuRI | GGCC | 4 cut(s) | 736, 1986, 3235, 3386 |
| BtgZI | GCGATG | 1 cut(s) | 2869 |
| BtsCI | GGATG | 5 cut(s) | 716, 1041, 2140, 2545, 3362 |
| BtsI | GCAGTG | 1 cut(s) | 3265 |
| BtsIMutI | CAGTG | 9 cut(s) | 911, 1375, 1448, 1910, 2556, 2638, 3174, 3243, 3265 |
| Cac8I | GCNNGC | 2 cut(s) | 1852, 3324 |
| CaiI | CAGNNNCTG | 1 cut(s) | 851 |
| CciI | TCATGA | 2 cut(s) | 558, 2965 |
| CfoI | GCGC | 2 cut(s) | 923, 2958 |
| Cfr13I | GGNCC | 4 cut(s) | 735, 839, 1747, 2198 |
| CseI | GACGC | 1 cut(s) | 2316 |
| Csp6I | GTAC | 6 cut(s) | 578, 1615, 1866, 2466, 2621, 3080 |
| CspCI | CAANNNNNGTGG | 5 cut(s) | 30, 916, 951, 1096, 1131 |
| CviQI | GTAC | 6 cut(s) | 578, 1615, 1866, 2466, 2621, 3080 |
| DinI | GGCGCC | 1 cut(s) | 2957 |
| DraIII | CACNNNGTG | 1 cut(s) | 744 |
| DriI | GACNNNNNGTC | 3 cut(s) | 870, 1123, 2994 |
| EaeI | YGGCCR | 1 cut(s) | 3233 |
| Eam1104I | CTCTTC | 1 cut(s) | 2529 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 870, 1123, 2994 |
| EarI | CTCTTC | 1 cut(s) | 2529 |
| EciI | GGCGGA | 1 cut(s) | 2987 |
| Ecl136II | GAGCTC | 1 cut(s) | 1254 |
| Eco130I | CCWWGG | 2 cut(s) | 2524, 3401 |
| Eco24I | GRGCYC | 1 cut(s) | 1256 |
| Eco31I | GGTCTC | 1 cut(s) | 370 |
| Eco32I | GATATC | 2 cut(s) | 355, 2190 |
| Eco47I | GGWCC | 3 cut(s) | 839, 1747, 2198 |
| Eco53kI | GAGCTC | 1 cut(s) | 1254 |
| Eco57I | CTGAAG | 1 cut(s) | 1613 |
| Eco72I | CACGTG | 1 cut(s) | 2630 |
| Eco88I | CYCGRG | 1 cut(s) | 1685 |
| EcoICRI | GAGCTC | 1 cut(s) | 1254 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 227 |
| EcoO109I | RGGNCCY | 1 cut(s) | 839 |
| EcoRI | GAATTC | 3 cut(s) | 676, 2372, 3067 |
| EcoRII | CCWGG | 3 cut(s) | 222, 844, 1981 |
| EcoRV | GATATC | 2 cut(s) | 355, 2190 |
| EcoT14I | CCWWGG | 2 cut(s) | 2524, 3401 |
| EcoT22I | ATGCAT | 2 cut(s) | 2142, 3364 |
| EcoT38I | GRGCYC | 1 cut(s) | 1256 |
| EgeI | GGCGCC | 1 cut(s) | 2957 |
| EheI | GGCGCC | 1 cut(s) | 2957 |
| ErhI | CCWWGG | 2 cut(s) | 2524, 3401 |
| Esp3I | CGTCTC | 2 cut(s) | 125, 3309 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2843, 2875 |
| FaqI | GGGAC | 3 cut(s) | 205, 2115, 3224 |
| FbaI | TGATCA | 1 cut(s) | 1084 |
| Fnu4HI | GCNGC | 3 cut(s) | 774, 1938, 3187 |
| FokI | GGATG | 5 cut(s) | 723, 1048, 2127, 2552, 3349 |
| FriOI | GRGCYC | 1 cut(s) | 1256 |
| Fsp4HI | GCNGC | 3 cut(s) | 774, 1938, 3187 |
| FspBI | CTAG | 4 cut(s) | 729, 1145, 1728, 2090 |
| GlaI | GCGC | 2 cut(s) | 922, 2957 |
| GluI | GCNGC | 3 cut(s) | 774, 1938, 3187 |
| GsuI | CTGGAG | 2 cut(s) | 828, 3296 |
| HaeII | RGCGCY | 1 cut(s) | 2959 |
| HaeIII | GGCC | 4 cut(s) | 736, 1986, 3235, 3386 |
| HapII | CCGG | 1 cut(s) | 3390 |
| HgaI | GACGC | 1 cut(s) | 2316 |
| HhaI | GCGC | 2 cut(s) | 923, 2958 |
| Hin1I | GRCGYC | 1 cut(s) | 2956 |
| Hin6I | GCGC | 2 cut(s) | 921, 2956 |
| HinP1I | GCGC | 2 cut(s) | 921, 2956 |
| HincII | GTYRAC | 1 cut(s) | 976 |
| HindII | GTYRAC | 1 cut(s) | 976 |
| HindIII | AAGCTT | 3 cut(s) | 464, 2074, 2939 |
| HpaI | GTTAAC | 1 cut(s) | 976 |
| HpaII | CCGG | 1 cut(s) | 3390 |
| HphI | GGTGA | 7 cut(s) | 362, 803, 1256, 1502, 1595, 2406, 2543 |
| Hpy166II | GTNNAC | 8 cut(s) | 553, 976, 1107, 1617, 2306, 2857, 3052, 3172 |
| Hpy8I | GTNNAC | 8 cut(s) | 553, 976, 1107, 1617, 2306, 2857, 3052, 3172 |
| Hpy99I | CGWCG | 1 cut(s) | 2916 |
| HpyCH4IV | ACGT | 5 cut(s) | 134, 580, 1286, 1544, 2629 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 2057 |
| HpySE526I | ACGT | 5 cut(s) | 134, 580, 1286, 1544, 2629 |
| Hsp92I | GRCGYC | 1 cut(s) | 2956 |
| HspAI | GCGC | 2 cut(s) | 921, 2956 |
| KasI | GGCGCC | 1 cut(s) | 2955 |
| Ksp22I | TGATCA | 1 cut(s) | 1084 |
| KspAI | GTTAAC | 1 cut(s) | 976 |
| LmnI | GCTCC | 6 cut(s) | 329, 928, 966, 1251, 1259, 2217 |
| Lsp1109I | GCAGC | 3 cut(s) | 760, 1924, 3173 |
| LweI | GCATC | 8 cut(s) | 488, 701, 1466, 1880, 2149, 2701, 3350, 3371 |
| MaeI | CTAG | 4 cut(s) | 729, 1145, 1728, 2090 |
| MaeII | ACGT | 5 cut(s) | 134, 580, 1286, 1544, 2629 |
| MaeIII | GTNAC | 8 cut(s) | 76, 115, 145, 152, 876, 949, 2681, 3161 |
| MfeI | CAATTG | 5 cut(s) | 867, 1742, 2439, 2583, 2725 |
| MflI | RGATCY | 4 cut(s) | 404, 1171, 2255, 2788 |
| MhlI | GDGCHC | 1 cut(s) | 1256 |
| MlsI | TGGCCA | 1 cut(s) | 3235 |
| MluNI | TGGCCA | 1 cut(s) | 3235 |
| Mly113I | GGCGCC | 1 cut(s) | 2956 |
| MlyI | GAGTC | 5 cut(s) | 512, 1157, 1310, 1697, 2460 |
| MmeI | TCCRAC | 2 cut(s) | 1112, 1823 |
| Mox20I | TGGCCA | 1 cut(s) | 3235 |
| Mph1103I | ATGCAT | 2 cut(s) | 2142, 3364 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1737, 2231 |
| MscI | TGGCCA | 1 cut(s) | 3235 |
| MslI | CAYNNNNRTG | 4 cut(s) | 563, 916, 3117, 3403 |
| Msp20I | TGGCCA | 1 cut(s) | 3235 |
| MspA1I | CMGCKG | 2 cut(s) | 2830, 3326 |
| MspI | CCGG | 1 cut(s) | 3390 |
| MspR9I | CCNGG | 3 cut(s) | 224, 846, 1983 |
| MunI | CAATTG | 5 cut(s) | 867, 1742, 2439, 2583, 2725 |
| Mva1269I | GAATGC | 2 cut(s) | 2062, 2142 |
| MvaI | CCWGG | 3 cut(s) | 224, 846, 1983 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 2057 |
| NarI | GGCGCC | 1 cut(s) | 2956 |
| NlaIV | GGNNCC | 6 cut(s) | 234, 840, 962, 1173, 2257, 2957 |
| NmuCI | GTSAC | 1 cut(s) | 949 |
| NsiI | ATGCAT | 2 cut(s) | 2142, 3364 |
| NspI | RCATGY | 5 cut(s) | 312, 921, 1113, 1997, 3080 |
| NspV | TTCGAA | 1 cut(s) | 2082 |
| OliI | CACNNNNGTG | 1 cut(s) | 3403 |
| PaeR7I | CTCGAG | 1 cut(s) | 1685 |
| PagI | TCATGA | 2 cut(s) | 558, 2965 |
| PciI | ACATGT | 3 cut(s) | 308, 1109, 3076 |
| PctI | GAATGC | 2 cut(s) | 2062, 2142 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1737, 2231 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 347, 851, 985, 1127 |
| PkrI | GCNGC | 3 cut(s) | 775, 1939, 3188 |
| PleI | GAGTC | 5 cut(s) | 511, 1156, 1310, 1696, 2459 |
| PluTI | GGCGCC | 1 cut(s) | 2959 |
| PmaCI | CACGTG | 1 cut(s) | 2630 |
| PmlI | CACGTG | 1 cut(s) | 2630 |
| PpsI | GAGTC | 5 cut(s) | 511, 1156, 1310, 1696, 2459 |
| Ppu21I | YACGTR | 2 cut(s) | 581, 2630 |
| PpuMI | RGGWCCY | 1 cut(s) | 839 |
| PscI | ACATGT | 3 cut(s) | 308, 1109, 3076 |
| PshBI | ATTAAT | 2 cut(s) | 1533, 1677 |
| PsiI | TTATAA | 1 cut(s) | 1227 |
| Psp124BI | GAGCTC | 1 cut(s) | 1256 |
| Psp5II | RGGWCCY | 1 cut(s) | 839 |
| Psp6I | CCWGG | 3 cut(s) | 222, 844, 1981 |
| PspCI | CACGTG | 1 cut(s) | 2630 |
| PspGI | CCWGG | 3 cut(s) | 222, 844, 1981 |
| PspN4I | GGNNCC | 6 cut(s) | 234, 840, 962, 1173, 2257, 2957 |
| PspPI | GGNCC | 4 cut(s) | 735, 839, 1747, 2198 |
| PspPPI | RGGWCCY | 1 cut(s) | 839 |
| PspXI | VCTCGAGB | 1 cut(s) | 1685 |
| PstI | CTGCAG | 1 cut(s) | 778 |
| PstNI | CAGNNNCTG | 1 cut(s) | 851 |
| PsuI | RGATCY | 4 cut(s) | 404, 1171, 2255, 2788 |
| PvuII | CAGCTG | 1 cut(s) | 3326 |
| RsaI | GTAC | 6 cut(s) | 579, 1616, 1867, 2467, 2622, 3081 |
| RsaNI | GTAC | 6 cut(s) | 578, 1615, 1866, 2466, 2621, 3080 |
| RseI | CAYNNNNRTG | 4 cut(s) | 563, 916, 3117, 3403 |
| SacI | GAGCTC | 1 cut(s) | 1256 |
| SatI | GCNGC | 3 cut(s) | 774, 1938, 3187 |
| Sau96I | GGNCC | 4 cut(s) | 735, 839, 1747, 2198 |
| SchI | GAGTC | 5 cut(s) | 512, 1157, 1310, 1697, 2460 |
| ScrFI | CCNGG | 3 cut(s) | 224, 846, 1983 |
| SduI | GDGCHC | 1 cut(s) | 1256 |
| SfaNI | GCATC | 8 cut(s) | 488, 701, 1466, 1880, 2149, 2701, 3350, 3371 |
| SfcI | CTRYAG | 1 cut(s) | 774 |
| SfoI | GGCGCC | 1 cut(s) | 2957 |
| Sfr274I | CTCGAG | 1 cut(s) | 1685 |
| SfuI | TTCGAA | 1 cut(s) | 2082 |
| SinI | GGWCC | 3 cut(s) | 839, 1747, 2198 |
| SlaI | CTCGAG | 1 cut(s) | 1685 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 563, 916, 3117, 3403 |
| SmlI | CTYRAG | 9 cut(s) | 128, 182, 208, 1070, 1166, 1418, 1685, 2237, 3203 |
| SmoI | CTYRAG | 9 cut(s) | 128, 182, 208, 1070, 1166, 1418, 1685, 2237, 3203 |
| SpeI | ACTAGT | 1 cut(s) | 2089 |
| SsiI | CCGC | 5 cut(s) | 1257, 1869, 2506, 2828, 2972 |
| SspDI | GGCGCC | 1 cut(s) | 2955 |
| SspI | AATATT | 3 cut(s) | 934, 1860, 3245 |
| SspMI | CTAG | 4 cut(s) | 729, 1145, 1728, 2090 |
| SstI | GAGCTC | 1 cut(s) | 1256 |
| StyD4I | CCNGG | 3 cut(s) | 222, 844, 1981 |
| StyI | CCWWGG | 2 cut(s) | 2524, 3401 |
| TaiI | ACGT | 5 cut(s) | 137, 583, 1289, 1547, 2632 |
| TaqI | TCGA | 5 cut(s) | 1686, 1990, 2082, 2134, 2380 |
| TaqII | GACCGA | 1 cut(s) | 383 |
| TatI | WGTACW | 3 cut(s) | 1614, 2620, 3079 |
| TscAI | CASTG | 9 cut(s) | 918, 1375, 1455, 1917, 2563, 2645, 3174, 3243, 3265 |
| TseFI | GTSAC | 1 cut(s) | 949 |
| TseI | GCWGC | 3 cut(s) | 773, 1937, 3186 |
| Tsp45I | GTSAC | 1 cut(s) | 949 |
| TspGWI | ACGGA | 6 cut(s) | 339, 465, 723, 1910, 2483, 2801 |
| TspRI | CASTG | 9 cut(s) | 918, 1375, 1455, 1917, 2563, 2645, 3174, 3243, 3265 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 347, 851, 985, 1127 |
| VpaK11BI | GGWCC | 3 cut(s) | 839, 1747, 2198 |
| VspI | ATTAAT | 2 cut(s) | 1533, 1677 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 227 |
| XceI | RCATGY | 5 cut(s) | 312, 921, 1113, 1997, 3080 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1128 |
| XhoI | CTCGAG | 1 cut(s) | 1685 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1737, 2231 |
| XspI | CTAG | 4 cut(s) | 729, 1145, 1728, 2090 |
| Zsp2I | ATGCAT | 2 cut(s) | 2142, 3364 |