RchiOBHm_Chr3g0488321

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000279
Physical Location & Seq
Forward (+)
35945295 .. 35946139
845 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45268

Sequence Viewer

Length: 711 bp
ATGTATGAGCCACAGGTTGGAGATGTCATTGCCTTGACAAATGTTAGATCAGAATGCATTGATGATTTGAACAGGCCTCCAAGGTTCTATCTAATCGCTTATGTTGATAAAGCAAATGATATTGATGAATTTCCTGATGCCCTCCAGTTCAAGATATTGACATGGTCAGAGCTTTGGGTTTGCTCAAGGTTGGAGTTAGTCCTCAAAGATTCCAAAGTTCCAGGAAGCATTGTTGGTTGCCTTACGCAGTTGAGAGCGAAGTGTACAAACACACTAAAATGTCCCTTCCAATGGAATTCTGTTCCTATTAACAAATATTCATTAAAGAACTTCTGCTTAGAAAATGCTTGCTTAATATTCTGTACTGCATCAACTTCTTCCAAATTGCATGTTGTAGCAGGAACAGGACCACTGGAATTGTTGGTCATTGATGAAGCTGCTCAGCTTAAAGAATGTGAATCAGCAATTCCTTTACAACTGTCTAGTCTCCGCCATGCTATCCTTGTAGGAGATGAGAGGCAACTCCCTGCAATGGTTAAAAGCGAGATTGCAGCAAGTGCTGATTTTGGGAGAAGTTTGTTTGGAAGGCTGGCAAAGTTGGGATACAAGAAGCACCTACTCAATGTCCAGTACAGGATGCATCCATCTGTCAGTTTATTTCCGAAAAGGGAGTTCTACAACAACCAGATATTAGATGGTCCAATGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

236

Amino Acids

26.51

Weight (kDa)

7.52

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_11 PF13086 107 - 182 8.1e-17 AAA domain
AAA_12 PF13087 190 - 233 1.5e-10 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 17
AciI CCGC 1 cut(s) 490
AcsI RAATTY 2 cut(s) 128, 295
AfaI GTAC 3 cut(s) 265, 364, 632
AfiI CCNNNNNNNGG 3 cut(s) 17, 291, 532
AgsI TTSAA 2 cut(s) 70, 151
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 3 cut(s) 172, 437, 445
AluI AGCT 3 cut(s) 172, 437, 445
Alw26I GTCTC 1 cut(s) 491
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 437, 551
ApoI RAATTY 2 cut(s) 128, 295
AspS9I GGNCC 2 cut(s) 407, 698
AvaII GGWCC 2 cut(s) 407, 698
BbvI GCAGC 2 cut(s) 424, 563
BccI CCATC 2 cut(s) 652, 689
BciT130I CCWGG 1 cut(s) 222
BciVI GTATCC 1 cut(s) 596
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 1 cut(s) 483
BfuI GTATCC 1 cut(s) 596
BisI GCNGC 2 cut(s) 438, 552
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 2 cut(s) 439, 553
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 2 cut(s) 407, 698
BmgT120I GGNCC 2 cut(s) 407, 698
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 4 cut(s) 127, 377, 627, 649
BpmI CTGGAG 1 cut(s) 128
Bpu1102I GCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 80
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 291, 532
Bse1I ACTGG 3 cut(s) 145, 417, 628
Bse3DI GCAATG 2 cut(s) 27, 537
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 2 cut(s) 640, 642
BseLI CCNNNNNNNGG 3 cut(s) 17, 291, 532
BseMI GCAATG 2 cut(s) 27, 537
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 3 cut(s) 145, 417, 628
BseXI GCAGC 2 cut(s) 424, 563
BshFI GGCC 1 cut(s) 76
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 3 cut(s) 17, 291, 532
BsmAI GTCTC 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 267
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 1 cut(s) 76
Bsp1407I TGTACA 1 cut(s) 263
Bsp143I GATC 1 cut(s) 47
Bsp1720I GCTNAGC 1 cut(s) 441
BspACI CCGC 1 cut(s) 490
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 454
BsrDI GCAATG 2 cut(s) 27, 537
BsrGI TGTACA 1 cut(s) 263
BsrI ACTGG 3 cut(s) 145, 417, 628
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 480
BstAPI GCANNNNNTGC 1 cut(s) 557
BstAUI TGTACA 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 349, 591
BstDEI CTNAG 2 cut(s) 337, 441
BstF5I GGATG 2 cut(s) 640, 642
BstKTI GATC 1 cut(s) 50
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 424, 563
BsuI GTATCC 1 cut(s) 596
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 2 cut(s) 640, 642
BtsIMutI CAGTG 1 cut(s) 410
Cac8I GCNNGC 2 cut(s) 349, 591
Cfr13I GGNCC 2 cut(s) 407, 698
Csp6I GTAC 3 cut(s) 264, 363, 631
CspCI CAANNNNNGTGG 2 cut(s) 399, 434
CviAII CATG 3 cut(s) 162, 389, 494
CviJI RGCY 6 cut(s) 10, 76, 172, 437, 445, 589
CviKI_1 RGCY 6 cut(s) 10, 76, 172, 437, 445, 589
CviQI GTAC 3 cut(s) 264, 363, 631
DdeI CTNAG 2 cut(s) 337, 441
DpnI GATC 1 cut(s) 49
DpnII GATC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 80
Eco147I AGGCCT 1 cut(s) 76
Eco47I GGWCC 2 cut(s) 407, 698
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 80
EcoT22I ATGCAT 2 cut(s) 59, 642
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 3 cut(s) 165, 392, 497
FaiI YATR 6 cut(s) 6, 102, 163, 390, 495, 709
FaqI GGGAC 1 cut(s) 267
FatI CATG 3 cut(s) 161, 388, 493
Fnu4HI GCNGC 2 cut(s) 438, 552
FokI GGATG 2 cut(s) 627, 649
Fsp4HI GCNGC 2 cut(s) 438, 552
FspBI CTAG 1 cut(s) 483
GluI GCNGC 2 cut(s) 438, 552
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 76
Hin1II CATG 3 cut(s) 165, 392, 497
HinfI GANTC 2 cut(s) 209, 458
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 3 cut(s) 52, 169, 663
Hpy188III TCNNGA 2 cut(s) 134, 151
Hpy8I GTNNAC 1 cut(s) 264
HpyAV CCTTC 2 cut(s) 295, 579
HpyCH4III ACNGT 1 cut(s) 480
HpyCH4V TGCA 6 cut(s) 57, 368, 388, 530, 551, 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpyF3I CTNAG 2 cut(s) 337, 441
Hsp92II CATG 3 cut(s) 165, 392, 497
Kzo9I GATC 1 cut(s) 47
Lsp1109I GCAGC 2 cut(s) 424, 563
LweI GCATC 4 cut(s) 127, 377, 627, 649
MaeI CTAG 1 cut(s) 483
MalI GATC 1 cut(s) 49
MboI GATC 1 cut(s) 47
MboII GAAGA 1 cut(s) 369
MluCI AATT 5 cut(s) 128, 295, 383, 416, 465
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 4 cut(s) 87, 152, 212, 510
Mph1103I ATGCAT 2 cut(s) 59, 642
MseI TTAA 5 cut(s) 309, 323, 353, 447, 537
MslI CAYNNNNRTG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 59
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 557
NdeII GATC 1 cut(s) 47
NlaIII CATG 3 cut(s) 165, 392, 497
NsiI ATGCAT 2 cut(s) 59, 642
NspI RCATGY 1 cut(s) 392
PceI AGGCCT 1 cut(s) 76
PctI GAATGC 1 cut(s) 59
PfeI GAWTC 2 cut(s) 209, 458
PflFI GACNNNGTC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 2 cut(s) 439, 553
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspPI GGNCC 2 cut(s) 407, 698
PsyI GACNNNGTC 1 cut(s) 163
RsaI GTAC 3 cut(s) 265, 364, 632
RsaNI GTAC 3 cut(s) 264, 363, 631
RseI CAYNNNNRTG 1 cut(s) 277
SaqAI TTAA 5 cut(s) 309, 323, 353, 447, 537
SatI GCNGC 2 cut(s) 438, 552
Sau3AI GATC 1 cut(s) 47
Sau96I GGNCC 2 cut(s) 407, 698
ScrFI CCNGG 1 cut(s) 222
SetI ASST 7 cut(s) 18, 86, 174, 191, 439, 447, 618
SfaNI GCATC 4 cut(s) 127, 377, 627, 649
SinI GGWCC 2 cut(s) 407, 698
SmiMI CAYNNNNRTG 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 5 cut(s) 128, 295, 383, 416, 465
SseBI AGGCCT 1 cut(s) 76
SsiI CCGC 1 cut(s) 490
SspI AATATT 2 cut(s) 317, 357
SspMI CTAG 1 cut(s) 483
StuI AGGCCT 1 cut(s) 76
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 480
TasI AATT 5 cut(s) 128, 295, 383, 416, 465
TatI WGTACW 3 cut(s) 263, 362, 630
TfiI GAWTC 2 cut(s) 209, 458
Tru1I TTAA 5 cut(s) 309, 323, 353, 447, 537
Tru9I TTAA 5 cut(s) 309, 323, 353, 447, 537
TscAI CASTG 1 cut(s) 417
TseI GCWGC 2 cut(s) 437, 551
TspDTI ATGAA 3 cut(s) 141, 309, 447
TspRI CASTG 1 cut(s) 417
Tth111I GACNNNGTC 1 cut(s) 163
Van91I CCANNNNNTGG 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 407, 698
XapI RAATTY 2 cut(s) 128, 295
XceI RCATGY 1 cut(s) 392
XcmI CCANNNNNNNNNTGG 1 cut(s) 692
XspI CTAG 1 cut(s) 483
Zsp2I ATGCAT 2 cut(s) 59, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.