Rh2BG187500

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000279
Physical Location & Seq
Reverse (-)
16741545 .. 16748790
7246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG187500.1

Sequence Viewer

Length: 702 bp
ATGTCGTCGGAGCTTTCAACCATCACAGCTTGCTTGCGAGAGGCTGGTGTAGCATCAGCCTACGCAATATCCCACATCCGAGGAGTTGAGTATTGGCAAAATCAAGTTCAAGGCCTTTTATTTGGGAGGTCATCAGATTGCTCGCAGGGTCTGGAAGGATTACTACGCAAAGTTTGCTTCACTCATGACTTTTTGAACTCCATAACAAAAGTTAAAGACATTGTGATTCTTTGCGAAGTGCTTGCGTTATTAACCAAGCTTTTGAGTGGATGGCGCCGACCTCTTGAGGACAAAGGAACTTTAGTGTATGATGGGACTTCTGCTCAACTGTTAGAGAAGTATAAAATCAAAGGGAACTTGAATCTTATTAGGACTGTAGATATTCTCCAGGAGAATGTACATTACATCCAAATTATGAAGTTTTGGGATATTTTGCCATTTTCTCATATACCAGAACAAGCAAAGCGTCTTGACATTGCTTTTGGGAATTTTACAGTGGACAAAATGAACCGCTGCAGTTACAAATGCATTGACAGTGCAATGTTGTGTACGAGGGAGGAATTTGTCAAGGTCTCGAACTTGCTACCATCGATGTACTCTCTGTTAAGCTCTGACTCGATAGGAAGATTGAAATTCCCAGGTTGTGTGAGATTTGGGCCGAGTCAGAAGCGGTTCTCATCAGTTTTGGTATTTGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

233

Amino Acids

26.26

Weight (kDa)

8.88

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 273
AciI CCGC 2 cut(s) 511, 670
AcsI RAATTY 3 cut(s) 487, 560, 632
AcyI GRCGYC 1 cut(s) 274
AfaI GTAC 3 cut(s) 399, 550, 596
AgsI TTSAA 5 cut(s) 18, 110, 196, 361, 631
AjnI CCWGG 2 cut(s) 387, 637
AluBI AGCT 4 cut(s) 13, 29, 259, 609
AluI AGCT 4 cut(s) 13, 29, 259, 609
Alw26I GTCTC 1 cut(s) 577
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 2 cut(s) 112, 656
ApeKI GCWGC 2 cut(s) 513, 695
ApoI RAATTY 3 cut(s) 487, 560, 632
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
Asp700I GAANNNNTTC 1 cut(s) 671
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 656
BanI GGYRCC 1 cut(s) 273
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BbvI GCAGC 1 cut(s) 500
BccI CCATC 4 cut(s) 29, 264, 305, 595
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 2 cut(s) 389, 639
BcoDI GTCTC 1 cut(s) 577
BfmI CTRYAG 2 cut(s) 375, 514
BfoI RGCGCY 1 cut(s) 277
BisI GCNGC 2 cut(s) 514, 696
BlsI GCNGC 2 cut(s) 515, 697
Bme1390I CCNGG 2 cut(s) 389, 639
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 1 cut(s) 275
BmrFI CCNGG 2 cut(s) 389, 639
BmsI GCATC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 305
Bsa29I ATCGAT 1 cut(s) 590
BsaHI GRCGYC 1 cut(s) 274
BsaI GGTCTC 1 cut(s) 577
BsaJI CCNNGG 2 cut(s) 79, 637
Bse3DI GCAATG 2 cut(s) 474, 546
BseBI CCWGG 2 cut(s) 389, 639
BseCI ATCGAT 1 cut(s) 590
BseDI CCNNGG 2 cut(s) 79, 637
BseGI GGATG 3 cut(s) 75, 275, 405
BseMI GCAATG 2 cut(s) 474, 546
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 500
BshFI GGCC 2 cut(s) 114, 658
BshNI GGYRCC 1 cut(s) 273
BshVI ATCGAT 1 cut(s) 590
BslFI GGGAC 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 577
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 2 cut(s) 114, 658
Bso31I GGTCTC 1 cut(s) 577
Bsp1407I TGTACA 1 cut(s) 397
BspACI CCGC 2 cut(s) 511, 670
BspANI GGCC 2 cut(s) 114, 658
BspDI ATCGAT 1 cut(s) 590
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 275
BspMAI CTGCAG 1 cut(s) 518
BspT107I GGYRCC 1 cut(s) 273
BspTNI GGTCTC 1 cut(s) 577
BsrDI GCAATG 2 cut(s) 474, 546
BsrGI TGTACA 1 cut(s) 397
BssECI CCNNGG 2 cut(s) 79, 637
BssNI GRCGYC 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 389, 639
Bst4CI ACNGT 4 cut(s) 330, 376, 496, 536
BstACI GRCGYC 1 cut(s) 274
BstAPI GCANNNNNTGC 1 cut(s) 174
BstAUI TGTACA 1 cut(s) 397
BstC8I GCNNGC 4 cut(s) 31, 35, 143, 243
BstF5I GGATG 3 cut(s) 75, 275, 405
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 1 cut(s) 276
BstMAI GTCTC 1 cut(s) 577
BstMWI GCNNNNNNNGC 2 cut(s) 50, 174
BstNI CCWGG 2 cut(s) 389, 639
BstSCI CCNGG 2 cut(s) 387, 637
BstSFI CTRYAG 2 cut(s) 375, 514
BstV1I GCAGC 1 cut(s) 500
Bsu15I ATCGAT 1 cut(s) 590
BsuRI GGCC 2 cut(s) 114, 658
BsuTUI ATCGAT 1 cut(s) 590
BtsCI GGATG 3 cut(s) 75, 275, 405
BtsIMutI CAGTG 2 cut(s) 501, 541
Cac8I GCNNGC 4 cut(s) 31, 35, 143, 243
CaiI CAGNNNCTG 1 cut(s) 151
CciI TCATGA 1 cut(s) 184
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 656
ClaI ATCGAT 1 cut(s) 590
CseI GACGC 1 cut(s) 455
Csp6I GTAC 3 cut(s) 398, 549, 595
CviAII CATG 1 cut(s) 185
CviJI RGCY 8 cut(s) 13, 29, 44, 59, 114, 259, 609, 658
CviKI_1 RGCY 8 cut(s) 13, 29, 44, 59, 114, 259, 609, 658
CviQI GTAC 3 cut(s) 398, 549, 595
DinI GGCGCC 1 cut(s) 275
Eco147I AGGCCT 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 577
EcoRII CCWGG 2 cut(s) 387, 637
EcoT22I ATGCAT 1 cut(s) 530
EgeI GGCGCC 1 cut(s) 275
EheI GGCGCC 1 cut(s) 275
FaeI CATG 1 cut(s) 188
FaiI YATR 8 cut(s) 186, 203, 309, 342, 416, 447, 449, 700
FaqI GGGAC 1 cut(s) 328
FatI CATG 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 514, 696
FokI GGATG 3 cut(s) 62, 282, 392
Fsp4HI GCNGC 2 cut(s) 514, 696
GlaI GCGC 1 cut(s) 275
GluI GCNGC 2 cut(s) 514, 696
GsuI CTGGAG 1 cut(s) 371
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 2 cut(s) 114, 658
HgaI GACGC 1 cut(s) 455
HhaI GCGC 1 cut(s) 276
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 1 cut(s) 188
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 4 cut(s) 226, 361, 614, 661
Hpy166II GTNNAC 2 cut(s) 499, 549
Hpy188I TCNGA 5 cut(s) 10, 80, 136, 613, 666
Hpy188III TCNNGA 5 cut(s) 152, 185, 284, 470, 574
Hpy8I GTNNAC 2 cut(s) 499, 549
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 4 cut(s) 330, 376, 496, 536
HpyCH4V TGCA 4 cut(s) 516, 528, 539, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 174
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 1 cut(s) 188
HspAI GCGC 1 cut(s) 274
KasI GGCGCC 1 cut(s) 273
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 30, 131, 137, 374, 401, 465, 624, 651
Lsp1109I GCAGC 1 cut(s) 500
LweI GCATC 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 518
MboII GAAGA 1 cut(s) 636
MluCI AATT 4 cut(s) 411, 487, 560, 632
Mly113I GGCGCC 1 cut(s) 274
MlyI GAGTC 2 cut(s) 608, 670
MnlI CCTC 7 cut(s) 34, 74, 120, 280, 291, 546, 550
Mph1103I ATGCAT 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 3 cut(s) 213, 251, 605
MspA1I CMGCKG 1 cut(s) 513
MspR9I CCNGG 2 cut(s) 389, 639
MvaI CCWGG 2 cut(s) 389, 639
MwoI GCNNNNNNNGC 2 cut(s) 50, 174
NarI GGCGCC 1 cut(s) 274
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 1 cut(s) 275
NmeAIII GCCGAG 1 cut(s) 684
NsiI ATGCAT 1 cut(s) 530
PagI TCATGA 1 cut(s) 184
PceI AGGCCT 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 2 cut(s) 226, 361
PfoI TCCNGGA 1 cut(s) 387
PkrI GCNGC 2 cut(s) 515, 697
PleI GAGTC 2 cut(s) 608, 669
PluTI GGCGCC 1 cut(s) 277
PpsI GAGTC 2 cut(s) 608, 669
Psp6I CCWGG 2 cut(s) 387, 637
PspGI CCWGG 2 cut(s) 387, 637
PspN4I GGNNCC 1 cut(s) 275
PspPI GGNCC 1 cut(s) 656
PstI CTGCAG 1 cut(s) 518
PstNI CAGNNNCTG 1 cut(s) 151
RsaI GTAC 3 cut(s) 399, 550, 596
RsaNI GTAC 3 cut(s) 398, 549, 595
SaqAI TTAA 3 cut(s) 213, 251, 605
SatI GCNGC 2 cut(s) 514, 696
Sau96I GGNCC 1 cut(s) 656
SchI GAGTC 2 cut(s) 608, 670
ScrFI CCNGG 2 cut(s) 389, 639
SetI ASST 8 cut(s) 15, 31, 131, 261, 283, 573, 611, 643
SfaNI GCATC 1 cut(s) 62
SfcI CTRYAG 2 cut(s) 375, 514
SfoI GGCGCC 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 4 cut(s) 411, 487, 560, 632
SseBI AGGCCT 1 cut(s) 114
SsiI CCGC 2 cut(s) 511, 670
SspDI GGCGCC 1 cut(s) 273
StuI AGGCCT 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 387, 637
TaaI ACNGT 4 cut(s) 330, 376, 496, 536
TaqI TCGA 3 cut(s) 575, 590, 617
TasI AATT 4 cut(s) 411, 487, 560, 632
TatI WGTACW 2 cut(s) 397, 594
TfiI GAWTC 2 cut(s) 226, 361
Tru1I TTAA 3 cut(s) 213, 251, 605
Tru9I TTAA 3 cut(s) 213, 251, 605
TscAI CASTG 2 cut(s) 501, 541
TseI GCWGC 2 cut(s) 513, 695
TspDTI ATGAA 2 cut(s) 431, 521
TspRI CASTG 2 cut(s) 501, 541
XapI RAATTY 3 cut(s) 487, 560, 632
XmnI GAANNNNTTC 1 cut(s) 671
Zsp2I ATGCAT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.