AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 142 |
| AcsI | RAATTY | 1 cut(s) | 270 |
| AgsI | TTSAA | 2 cut(s) | 89, 284 |
| AjnI | CCWGG | 1 cut(s) | 301 |
| AleI | CACNNNNGTG | 1 cut(s) | 161 |
| AluBI | AGCT | 2 cut(s) | 215, 293 |
| AluI | AGCT | 2 cut(s) | 215, 293 |
| Alw26I | GTCTC | 2 cut(s) | 27, 53 |
| AlwI | GGATC | 1 cut(s) | 142 |
| AoxI | GGCC | 1 cut(s) | 123 |
| ApoI | RAATTY | 1 cut(s) | 270 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 188 |
| AspS9I | GGNCC | 1 cut(s) | 124 |
| AsuHPI | GGTGA | 1 cut(s) | 317 |
| BbsI | GAAGAC | 1 cut(s) | 122 |
| BciT130I | CCWGG | 1 cut(s) | 303 |
| BcoDI | GTCTC | 2 cut(s) | 27, 53 |
| Bme1390I | CCNGG | 1 cut(s) | 303 |
| BmgT120I | GGNCC | 1 cut(s) | 124 |
| BmrFI | CCNGG | 1 cut(s) | 303 |
| BpiI | GAAGAC | 1 cut(s) | 122 |
| BsaI | GGTCTC | 1 cut(s) | 53 |
| BsaJI | CCNNGG | 1 cut(s) | 63 |
| BseBI | CCWGG | 1 cut(s) | 303 |
| BseDI | CCNNGG | 1 cut(s) | 63 |
| BseMII | CTCAG | 2 cut(s) | 42, 134 |
| BseRI | GAGGAG | 1 cut(s) | 80 |
| BsgI | GTGCAG | 1 cut(s) | 161 |
| BshFI | GGCC | 1 cut(s) | 125 |
| BsmAI | GTCTC | 2 cut(s) | 27, 53 |
| BsmBI | CGTCTC | 1 cut(s) | 27 |
| BsnI | GGCC | 1 cut(s) | 125 |
| Bso31I | GGTCTC | 1 cut(s) | 53 |
| Bsp143I | GATC | 3 cut(s) | 54, 78, 147 |
| BspANI | GGCC | 1 cut(s) | 125 |
| BspCNI | CTCAG | 2 cut(s) | 43, 133 |
| BspPI | GGATC | 1 cut(s) | 142 |
| BspTNI | GGTCTC | 1 cut(s) | 53 |
| BssECI | CCNNGG | 1 cut(s) | 63 |
| BssMI | GATC | 3 cut(s) | 54, 78, 147 |
| Bst2UI | CCWGG | 1 cut(s) | 303 |
| BstDEI | CTNAG | 2 cut(s) | 51, 120 |
| BstKTI | GATC | 3 cut(s) | 57, 81, 150 |
| BstMAI | GTCTC | 2 cut(s) | 27, 53 |
| BstMBI | GATC | 3 cut(s) | 54, 78, 147 |
| BstNI | CCWGG | 1 cut(s) | 303 |
| BstNSI | RCATGY | 1 cut(s) | 257 |
| BstSCI | CCNGG | 1 cut(s) | 301 |
| BstV2I | GAAGAC | 1 cut(s) | 122 |
| BsuRI | GGCC | 1 cut(s) | 125 |
| Cfr13I | GGNCC | 1 cut(s) | 124 |
| CviAII | CATG | 2 cut(s) | 218, 254 |
| CviJI | RGCY | 4 cut(s) | 125, 135, 215, 293 |
| CviKI_1 | RGCY | 4 cut(s) | 125, 135, 215, 293 |
| DdeI | CTNAG | 2 cut(s) | 51, 120 |
| DpnI | GATC | 3 cut(s) | 56, 80, 149 |
| DpnII | GATC | 3 cut(s) | 54, 78, 147 |
| Eco31I | GGTCTC | 1 cut(s) | 53 |
| EcoRII | CCWGG | 1 cut(s) | 301 |
| Esp3I | CGTCTC | 1 cut(s) | 27 |
| FaeI | CATG | 2 cut(s) | 221, 257 |
| FaiI | YATR | 7 cut(s) | 35, 129, 219, 239, 255, 318, 323 |
| FatI | CATG | 2 cut(s) | 217, 253 |
| HaeIII | GGCC | 1 cut(s) | 125 |
| Hin1II | CATG | 2 cut(s) | 221, 257 |
| HincII | GTYRAC | 1 cut(s) | 243 |
| HindII | GTYRAC | 1 cut(s) | 243 |
| HinfI | GANTC | 6 cut(s) | 47, 95, 118, 244, 287, 339 |
| HphI | GGTGA | 1 cut(s) | 317 |
| Hpy166II | GTNNAC | 1 cut(s) | 243 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 100, 276 |
| Hpy188III | TCNNGA | 2 cut(s) | 58, 109 |
| Hpy8I | GTNNAC | 1 cut(s) | 243 |
| HpyAV | CCTTC | 2 cut(s) | 67, 207 |
| HpyCH4V | TGCA | 2 cut(s) | 142, 257 |
| HpyF3I | CTNAG | 2 cut(s) | 51, 120 |
| Hsp92II | CATG | 2 cut(s) | 221, 257 |
| Kzo9I | GATC | 3 cut(s) | 54, 78, 147 |
| LpnPI | CCDG | 3 cut(s) | 107, 288, 315 |
| MaeIII | GTNAC | 5 cut(s) | 163, 176, 249, 305, 331 |
| MalI | GATC | 3 cut(s) | 56, 80, 149 |
| MboI | GATC | 3 cut(s) | 54, 78, 147 |
| MboII | GAAGA | 4 cut(s) | 82, 124, 127, 296 |
| MfeI | CAATTG | 1 cut(s) | 279 |
| MluCI | AATT | 2 cut(s) | 270, 279 |
| MlyI | GAGTC | 3 cut(s) | 104, 112, 238 |
| MnlI | CCTC | 5 cut(s) | 37, 58, 76, 202, 309 |
| MroXI | GAANNNNTTC | 1 cut(s) | 188 |
| MslI | CAYNNNNRTG | 1 cut(s) | 161 |
| MspA1I | CMGCKG | 1 cut(s) | 293 |
| MspR9I | CCNGG | 1 cut(s) | 303 |
| MunI | CAATTG | 1 cut(s) | 279 |
| MvaI | CCWGG | 1 cut(s) | 303 |
| NdeII | GATC | 3 cut(s) | 54, 78, 147 |
| NlaIII | CATG | 2 cut(s) | 221, 257 |
| NmuCI | GTSAC | 3 cut(s) | 163, 249, 305 |
| NspI | RCATGY | 1 cut(s) | 257 |
| OliI | CACNNNNGTG | 1 cut(s) | 161 |
| PdmI | GAANNNNTTC | 1 cut(s) | 188 |
| PfeI | GAWTC | 3 cut(s) | 47, 287, 339 |
| PflFI | GACNNNGTC | 2 cut(s) | 104, 247 |
| PleI | GAGTC | 3 cut(s) | 103, 112, 238 |
| PpsI | GAGTC | 3 cut(s) | 103, 112, 238 |
| Psp6I | CCWGG | 1 cut(s) | 301 |
| PspGI | CCWGG | 1 cut(s) | 301 |
| PspPI | GGNCC | 1 cut(s) | 124 |
| PsyI | GACNNNGTC | 2 cut(s) | 104, 247 |
| PvuII | CAGCTG | 1 cut(s) | 293 |
| RseI | CAYNNNNRTG | 1 cut(s) | 161 |
| Sau3AI | GATC | 3 cut(s) | 54, 78, 147 |
| Sau96I | GGNCC | 1 cut(s) | 124 |
| SchI | GAGTC | 3 cut(s) | 104, 112, 238 |
| ScrFI | CCNGG | 1 cut(s) | 303 |
| SetI | ASST | 5 cut(s) | 34, 87, 217, 295, 301 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 161 |
| Sse9I | AATT | 2 cut(s) | 270, 279 |
| StyD4I | CCNGG | 1 cut(s) | 301 |
| TaqI | TCGA | 4 cut(s) | 57, 81, 93, 233 |
| TaqII | GACCGA | 1 cut(s) | 77 |
| TasI | AATT | 2 cut(s) | 270, 279 |
| TfiI | GAWTC | 3 cut(s) | 47, 287, 339 |
| TseFI | GTSAC | 3 cut(s) | 163, 249, 305 |
| Tsp45I | GTSAC | 3 cut(s) | 163, 249, 305 |
| TspDTI | ATGAA | 1 cut(s) | 181 |
| Tth111I | GACNNNGTC | 2 cut(s) | 104, 247 |
| XapI | RAATTY | 1 cut(s) | 270 |
| XceI | RCATGY | 1 cut(s) | 257 |
| XmnI | GAANNNNTTC | 1 cut(s) | 188 |