MD08G1077900.v1.1

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000279
Physical Location & Seq
Forward (+)
6489420 .. 6490982
1563 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1077900.v1.1.491

Sequence Viewer

Length: 369 bp
ATGTACTTCTTTGACGAAGTGCAGCTCAGTTGTAGTATGTATTGTCTTTGGATACCGGGGCATGGATCGACCTTGATTAACAGTAACTCAATTTGGAAGAAGCTAATTCTTGACGCGAAGAAACAAGAATGTTTTGTTAATGCCGATGAGGAAAAGAAGTTGGCTCAGGCTATTGCAGAAGCCCTGCTGGAACTTGACCAATTACATATTCCACTTGATCCAGATTCTTTGTTGTTCAAAAATGCAAAATGGAAGAATTCAGTTTTTATCCAGGTTATGAAGATTTGGGAAATCCTTCCACTTTCTGACATTCCTACACTTGCAAAGTCCCTTGACACCATTTTTAGAGCTATACAGTCGATAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

123

Amino Acids

14.04

Weight (kDa)

5.62

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 116
AclWI GGATC 2 cut(s) 73, 212
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AluBI AGCT 3 cut(s) 25, 103, 350
AluI AGCT 3 cut(s) 25, 103, 350
AlwI GGATC 2 cut(s) 73, 212
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 1 cut(s) 256
Asp700I GAANNNNTTC 1 cut(s) 294
AsuC2I CCSGG 1 cut(s) 57
BbvI GCAGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 272
BciVI GTATCC 1 cut(s) 45
BcnI CCSGG 1 cut(s) 57
BfuI GTATCC 1 cut(s) 45
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 2 cut(s) 57, 272
BmrFI CCNGG 2 cut(s) 57, 272
Bpu10I CCTNAGC 1 cut(s) 165
BpuMI CCSGG 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 62
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMII CTCAG 2 cut(s) 40, 179
BseXI GCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 65, 217
BspCNI CTCAG 2 cut(s) 39, 178
BspFNI CGCG 1 cut(s) 116
BspPI GGATC 2 cut(s) 73, 212
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 2 cut(s) 65, 217
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 2 cut(s) 83, 357
BstDEI CTNAG 2 cut(s) 26, 165
BstFNI CGCG 1 cut(s) 116
BstKTI GATC 2 cut(s) 68, 220
BstMBI GATC 2 cut(s) 65, 217
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 55, 270
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 34
BsuI GTATCC 1 cut(s) 45
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 62
CviJI RGCY 6 cut(s) 25, 103, 164, 170, 182, 350
CviKI_1 RGCY 6 cut(s) 25, 103, 164, 170, 182, 350
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 26, 165
DpnI GATC 2 cut(s) 67, 219
DpnII GATC 2 cut(s) 65, 217
EcoRI GAATTC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 270
FaeI CATG 1 cut(s) 65
FaiI YATR 5 cut(s) 38, 63, 207, 278, 353
FaqI GGGAC 1 cut(s) 313
FatI CATG 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 23
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 122
Hin1II CATG 1 cut(s) 65
HinfI GANTC 1 cut(s) 224
HpaII CCGG 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 110, 221
HpyAV CCTTC 1 cut(s) 305
HpyCH4III ACNGT 2 cut(s) 83, 357
HpyCH4V TGCA 4 cut(s) 22, 176, 245, 323
HpyF3I CTNAG 2 cut(s) 26, 165
Hsp92II CATG 1 cut(s) 65
Kzo9I GATC 2 cut(s) 65, 217
LpnPI CCDG 7 cut(s) 69, 152, 173, 197, 234, 257, 284
Lsp1109I GCAGC 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 67, 219
MboI GATC 2 cut(s) 65, 217
MboII GAAGA 4 cut(s) 109, 130, 265, 292
MluCI AATT 4 cut(s) 90, 105, 200, 256
MnlI CCTC 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 2 cut(s) 78, 138
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 2 cut(s) 57, 272
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 1 cut(s) 116
NciI CCSGG 1 cut(s) 57
NdeII GATC 2 cut(s) 65, 217
NlaIII CATG 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 78, 138
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 2 cut(s) 65, 217
ScrFI CCNGG 2 cut(s) 57, 272
SetI ASST 5 cut(s) 27, 74, 105, 276, 352
Sse9I AATT 4 cut(s) 90, 105, 200, 256
StyD4I CCNGG 2 cut(s) 55, 270
TaaI ACNGT 2 cut(s) 83, 357
TaqI TCGA 2 cut(s) 68, 359
TasI AATT 4 cut(s) 90, 105, 200, 256
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 2 cut(s) 78, 138
Tru9I TTAA 2 cut(s) 78, 138
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 293
XapI RAATTY 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.