Rroxscaffold_7G00203240

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000279
Physical Location & Seq
Reverse (-)
51823417 .. 51828345
4929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203240.1

Sequence Viewer

Length: 2991 bp
ATGTTTACGAGTGACTTACAGGTAACTACGATTCCTGAGACGTTCTTGACGGTAACGAGTTACATGAGAGCATTTGTTCCTTCACTTCTTGAGGAAATACATGATGAATTACGCTCAAGCATGATGTCCCTGGCACAGGCACCAACTTGTGAAATTCTGACAGTTGAAACTTCAAAGGATCATAAACCTCCCAAAGACTTGTTTTACCAAATTACATGTGCAGAAGATTACGGAGGAGCATACGAGCCAGTTGTTGGTGATATCATTGCCTTGACCGATGTGAGACCAAAATCCATTGATGATTTGAATAGATCCAGAAATTCTTATCTTCTTGCTTATGTTATTGGATCACAACACGGAAGTCCTGATAAGCTTCCGATACTCGCATCAAAGTCTATCAATAAAGGAGAGTCAGGAAACAAAAGGATTACCAGTAAGAGGGATACACTTTTTGCTGTTTACCTCATGAACATGACAACAAATGTACGTGTATGGAAAGCTCTGAACTCAGAATTAGGCTCAAACACAAATCTGTTTAAGAATGTTCTGCAAGTGCAACCACCAAATTCATCACATGGTCAGAATTCTTGCAAAATTTGTTTTTCCAATGGTAAAGGCTGCCCTGAGCTTTTTACTAGATGGCCCACAATGTGTTCTGATCTAAATGATTCCCAAGAGGCTGCAGTTTTGGACTGTATCAGTTTGAGTAAGTGCCATCACCAGAATACGGTCAAGCTAATATGGGGTCCTCCAGGGACTGGAAAAACAAAGACAATTGGTCTGTCACTATTTGCTCTATTTCAGTTGAAGTGTAGAACACTGACATGCGCTCCCACCAATATTGCTATCGTAGAAGTGACAACACGGCTCCTGAGATTGGTTAACCAGTCGTTGGATTATGGCAAGTATGGACTTGGAGATATAATTCTATTTGGGAATATGATGAGATTGAAGATTGATAATTATGATGACCTTCTTGAGATATTCCTTGATCATCGTGCTACAATTCTGTCCACATGTTTTGACCCATTGTCTGGTTGGAAACATTGGCTAGAGTCAATGATAGAATTGCTTGAGGATCCAAACAAACAATACTCATTGTATTTGGAATCAATAAGGAAAAGACACAATTATAAACATGAAGATTCTGGTGATAGGAGCTCAGCAAGTGATGGTGGAAATGATAATTTGACGTTTGAGCAGTTTGTGAATGATAGACAGGACTCAATGTATTTGAAAAAGAGAGGGGAAAAATACAATGATGATGGTAAAGACAGTGATAATAGGAACTCATCAAGTGATGATCTCATTGGTTTTTTGACACTTGAGGAGTTTGTGAAGGAGAAACAGTATTCACAGTATTTGAAAAAGGGAAAGGAAAGATGCGACAATGACGGTGAAGATAGTGATAACACAAACTCATCAACTGATGATCAAATTAATGTTTTGACGTTTGAGGAGTTTATGAAGGAGAAACAGAATGACATTGGGGTTGGCATTGCTAGTGAAAGGTTTCAATTGGTCCTGAACAGTTGTGTTCATATACTGAGGTCACTTCGTGTATTTTCTTGTCCAACTTCTAACTATGATGGTCAGACAATAAGGAAGTTGTGTTTGGAAAATGCTTGCTTAATATTTTGTACCGCATCAAGCTCTGCAAAATTGCACACGGAAGGAAAGAAACCACTGGAACTTTTAGTCATTGATGAAGCTGCTCAGCTTAAAGAATGTGAATCAGCAATCCCTTTACAACTACCTGGCCTTCGACATGCTATTCTCATAGGAGATGAGAGGCAACTTCCTGCTATGGTTAAAAGCAAGATTGCTGAGAATGCTGGTTTCGGAAGAAGCTTGTTCGAAAGACTAGTCCTATTGGGACATGAGAAACACCTTCTCAATGTCCAGTATCGAATGCATCCATCAATCAGCTTATTTCCGAAAAAGGAGTTTTACAATAATCAGATATCAGATGGTCCAAATGTCAATGAAAGGAGCTATGAGAAATGCTTCCTTGAGGGAAAAATGTTTGGATCCTACTCCTTCATAAATATAGCCGATGGACAAGAAGAATTTGATCGTGGACGCAGTTTGAAAAATATGGTTGAGGTTGCTGTTGTCTATCAGATAGTTCTTAGCCTTTACGAAGAATTCAGTCGAACAAAGAAGGTTAGCATTGGGGTAATATCACCTTACAAAGCCCAAGTCAATGCAATTGGGGAGAGAGTCAGAGAATACAGTACGGATCATTTAGCTGGAACTGGCTTCACTCTAAGTGTGCGGTCTGTTGATGGATTCCAAGGTGGTGAAGAGGATGTGATAATCATCTCCACTGTTAGATGTAATGGGAATGGATCAATTGGTTTCCTCTCAAATCATCAAAGAGCAAATGTTGTACTAACACGTGCAAGGCACTGTCTTTGGATATTGGGGAATGGACTGACCTTGTTTAAGAGTAACTCTATTTGGAAGAATCTAATCATTGATGCCAAGAATCGCAATTGTTTTTACAACGCTGATGAGGACAACAACTTGTCTCAGGCTATTGCATTTGCCCTTACGGATCTTGACCAAGTTCAAGTTTTATTCAATTCTGATTCTCCGCTGTTCAGAAATGCAAAATGGAAGGTTTACTTTGCCAATGAATTTTACAACTCCATCGCAAAAATTAAAGACCCCAAGATTCGTCGGGAAGTGGTTTCCCTACTGACAAAGCTTTCAAGTGGTTGGCGCCAATCTCATGAGGCGGAACTCTATGGTAGGACTTCTTGTCAGCTATTAGAGAAGTATCAAGTCAATGAGAACCTGAATTTGATTTGGACTGTGGACATTCTCCAAGAGAATTCACAACATGTACAGATTATACAAGTTTGGGATATTGTGCCACATTCTGATGTTCCAAATCTCACAAACCGTCTTGACATCATTTTCGGGAGTTACACAGTGGACAAGGTTAATCGCTGCAAACAAAGAAGTCTTGAGGGGTACGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

996

Amino Acids

112.7

Weight (kDa)

6.11

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 80 - 169 5.6e-10 Domain of unknown function (DUF6469)
AAA_11 PF13086 221 - 607 1.8e-29 AAA domain
AAA_12 PF13087 615 - 811 1.2e-56 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1134
AccB1I GGYRCC 2 cut(s) 139, 2727
AccB7I CCANNNNNTGG 4 cut(s) 254, 758, 892, 1034
AciI CCGC 4 cut(s) 1644, 2278, 2600, 2744
AcvI CACGTG 1 cut(s) 2402
AcyI GRCGYC 1 cut(s) 2728
AdeI CACNNNGTG 2 cut(s) 651, 1559
AfaI GTAC 6 cut(s) 486, 1642, 2239, 2394, 2853, 2984
AfiI CCNNNNNNNGG 8 cut(s) 136, 254, 438, 727, 758, 877, 892, 1034
AflIII ACRYGT 5 cut(s) 215, 487, 1016, 2399, 2848
AhdI GACNNNNNGTC 3 cut(s) 777, 1030, 2766
AhlI ACTAGT 1 cut(s) 1864
AjnI CCWGG 3 cut(s) 129, 751, 1756
AjuI GAANNNNNNNTTGG 2 cut(s) 1598, 1630
Alw21I GWGCWC 1 cut(s) 1163
Alw26I GTCTC 3 cut(s) 32, 277, 2538
AlwNI CAGNNNCTG 1 cut(s) 758
AoxI GGCC 2 cut(s) 641, 1759
ApeKI GCWGC 4 cut(s) 618, 680, 1712, 2958
ArsI GACNNNNNNTTYG 6 cut(s) 1851, 1883, 2187, 2219, 2909, 2941
AseI ATTAAT 1 cut(s) 1440
Asp700I GAANNNNTTC 2 cut(s) 1512, 2006
AspLEI GCGC 2 cut(s) 830, 2730
AspS9I GGNCC 4 cut(s) 642, 746, 1522, 1973
AsuHPI GGTGA 6 cut(s) 269, 710, 1163, 1409, 2178, 2315
AsuII TTCGAA 1 cut(s) 1857
AvaII GGWCC 3 cut(s) 746, 1522, 1973
BamHI GGATCC 2 cut(s) 1078, 2030
BanI GGYRCC 2 cut(s) 139, 2727
BanII GRGCYC 1 cut(s) 1163
BbrPI CACGTG 1 cut(s) 2402
Bbv12I GWGCWC 1 cut(s) 1163
BbvI GCAGC 4 cut(s) 605, 667, 1699, 2945
BceAI ACGGC 1 cut(s) 881
BciT130I CCWGG 3 cut(s) 131, 753, 1758
BciVI GTATCC 1 cut(s) 436
BclI TGATCA 2 cut(s) 991, 1432
BcoDI GTCTC 3 cut(s) 32, 277, 2538
BcuI ACTAGT 1 cut(s) 1864
BfaI CTAG 4 cut(s) 636, 1052, 1503, 1865
BfmI CTRYAG 1 cut(s) 681
BfoI RGCGCY 1 cut(s) 2731
BfuI GTATCC 1 cut(s) 436
BisI GCNGC 4 cut(s) 619, 681, 1713, 2959
BlpI GCTNAGC 2 cut(s) 1162, 1716
BlsI GCNGC 4 cut(s) 620, 682, 1714, 2960
Bme1390I CCNGG 3 cut(s) 131, 753, 1758
Bme18I GGWCC 3 cut(s) 746, 1522, 1973
BmeRI GACNNNNNGTC 3 cut(s) 777, 1030, 2766
BmgT120I GGNCC 4 cut(s) 642, 746, 1522, 1973
BmiI GGNNCC 6 cut(s) 141, 747, 869, 1080, 2032, 2729
BmrFI CCNGG 3 cut(s) 131, 753, 1758
BmsI GCATC 5 cut(s) 395, 1373, 1655, 1924, 2473
BpmI CTGGAG 1 cut(s) 735
Bpu10I CCTNAGC 1 cut(s) 624
Bpu1102I GCTNAGC 2 cut(s) 1162, 1716
Bpu14I TTCGAA 1 cut(s) 1857
BpuEI CTTGAG 6 cut(s) 100, 110, 998, 1094, 1346, 2033
BsaAI YACGTR 3 cut(s) 488, 2402, 2986
BsaBI GATNNNNATC 1 cut(s) 2321
BsaHI GRCGYC 1 cut(s) 2728
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 3 cut(s) 129, 752, 2296
BsaXI ACNNNNNCTCC 4 cut(s) 814, 844, 1334, 1364
Bsc4I CCNNNNNNNGG 8 cut(s) 136, 254, 438, 727, 758, 877, 892, 1034
Bse1I ACTGG 7 cut(s) 248, 432, 763, 886, 1692, 1903, 2263
Bse3DI GCAATG 2 cut(s) 264, 1497
Bse8I GATNNNNATC 1 cut(s) 2321
BseBI CCWGG 3 cut(s) 131, 753, 1758
BseDI CCNNGG 3 cut(s) 129, 752, 2296
BseGI GGATG 2 cut(s) 1915, 2317
BseJI GATNNNNATC 1 cut(s) 2321
BseLI CCNNNNNNNGG 8 cut(s) 136, 254, 438, 727, 758, 877, 892, 1034
BseMI GCAATG 2 cut(s) 264, 1497
BseMII CTCAG 9 cut(s) 27, 522, 615, 863, 1176, 1538, 1730, 1818, 2549
BseNI ACTGG 7 cut(s) 248, 432, 763, 886, 1692, 1903, 2263
BseRI GAGGAG 3 cut(s) 249, 1343, 1472
BseXI GCAGC 4 cut(s) 605, 667, 1699, 2945
BsgI GTGCAG 1 cut(s) 240
BshFI GGCC 2 cut(s) 643, 1761
BshNI GGYRCC 2 cut(s) 139, 2727
BsiHKAI GWGCWC 1 cut(s) 1163
BslFI GGGAC 3 cut(s) 112, 769, 1890
BslI CCNNNNNNNGG 8 cut(s) 136, 254, 438, 727, 758, 877, 892, 1034
BsmAI GTCTC 3 cut(s) 32, 277, 2538
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 3 cut(s) 112, 769, 1890
BsmI GAATGC 2 cut(s) 1837, 1917
BsnI GGCC 2 cut(s) 643, 1761
Bso31I GGTCTC 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 1857
Bsp1286I GDGCHC 1 cut(s) 1163
Bsp1407I TGTACA 1 cut(s) 2851
Bsp1720I GCTNAGC 2 cut(s) 1162, 1716
BspACI CCGC 4 cut(s) 1644, 2278, 2600, 2744
BspANI GGCC 2 cut(s) 643, 1761
BspCNI CTCAG 9 cut(s) 28, 521, 616, 864, 1175, 1539, 1729, 1819, 2548
BspHI TCATGA 2 cut(s) 465, 2737
BspLI GGNNCC 6 cut(s) 141, 747, 869, 1080, 2032, 2729
BspMAI CTGCAG 1 cut(s) 685
BspT104I TTCGAA 1 cut(s) 1857
BspT107I GGYRCC 2 cut(s) 139, 2727
BspTNI GGTCTC 1 cut(s) 277
BsrDI GCAATG 2 cut(s) 264, 1497
BsrGI TGTACA 1 cut(s) 2851
BsrI ACTGG 7 cut(s) 248, 432, 763, 886, 1692, 1903, 2263
BssECI CCNNGG 3 cut(s) 129, 752, 2296
BssNI GRCGYC 1 cut(s) 2728
BssT1I CCWWGG 1 cut(s) 2296
Bst2UI CCWGG 3 cut(s) 131, 753, 1758
Bst6I CTCTTC 1 cut(s) 2301
BstACI GRCGYC 1 cut(s) 2728
BstAUI TGTACA 1 cut(s) 2851
BstBAI YACGTR 3 cut(s) 488, 2402, 2986
BstBI TTCGAA 1 cut(s) 1857
BstC8I GCNNGC 1 cut(s) 1627
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 2 cut(s) 1915, 2317
BstH2I RGCGCY 1 cut(s) 2731
BstHHI GCGC 2 cut(s) 830, 2730
BstMAI GTCTC 3 cut(s) 32, 277, 2538
BstMWI GCNNNNNNNGC 1 cut(s) 1832
BstNI CCWGG 3 cut(s) 131, 753, 1758
BstNSI RCATGY 5 cut(s) 219, 828, 1020, 1772, 2852
BstSCI CCNGG 3 cut(s) 129, 751, 1756
BstSFI CTRYAG 1 cut(s) 681
BstSNI TACGTA 1 cut(s) 2986
BstV1I GCAGC 4 cut(s) 605, 667, 1699, 2945
BstX2I RGATCY 4 cut(s) 311, 1078, 2030, 2560
BstYI RGATCY 4 cut(s) 311, 1078, 2030, 2560
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 2 cut(s) 643, 1761
BtgZI GCGATG 1 cut(s) 2641
BtsCI GGATG 2 cut(s) 1915, 2317
BtsIMutI CAGTG 6 cut(s) 818, 1282, 1685, 2328, 2410, 2946
Cac8I GCNNGC 1 cut(s) 1627
CaiI CAGNNNCTG 1 cut(s) 758
CciI TCATGA 2 cut(s) 465, 2737
CfoI GCGC 2 cut(s) 830, 2730
Cfr13I GGNCC 4 cut(s) 642, 746, 1522, 1973
CseI GACGC 1 cut(s) 2091
Csp6I GTAC 6 cut(s) 485, 1641, 2238, 2393, 2852, 2983
CspCI CAANNNNNGTGG 4 cut(s) 823, 858, 1003, 1038
CviQI GTAC 6 cut(s) 485, 1641, 2238, 2393, 2852, 2983
DinI GGCGCC 1 cut(s) 2729
DraIII CACNNNGTG 2 cut(s) 651, 1559
DriI GACNNNNNGTC 3 cut(s) 777, 1030, 2766
Eam1104I CTCTTC 1 cut(s) 2301
Eam1105I GACNNNNNGTC 3 cut(s) 777, 1030, 2766
EarI CTCTTC 1 cut(s) 2301
EciI GGCGGA 1 cut(s) 2759
Ecl136II GAGCTC 1 cut(s) 1161
Eco105I TACGTA 1 cut(s) 2986
Eco130I CCWWGG 1 cut(s) 2296
Eco24I GRGCYC 1 cut(s) 1163
Eco31I GGTCTC 1 cut(s) 277
Eco32I GATATC 2 cut(s) 262, 1965
Eco47I GGWCC 3 cut(s) 746, 1522, 1973
Eco53kI GAGCTC 1 cut(s) 1161
Eco72I CACGTG 1 cut(s) 2402
EcoICRI GAGCTC 1 cut(s) 1161
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 746
EcoRI GAATTC 3 cut(s) 583, 2147, 2839
EcoRII CCWGG 3 cut(s) 129, 751, 1756
EcoRV GATATC 2 cut(s) 262, 1965
EcoT14I CCWWGG 1 cut(s) 2296
EcoT22I ATGCAT 1 cut(s) 1917
EcoT38I GRGCYC 1 cut(s) 1163
EgeI GGCGCC 1 cut(s) 2729
EheI GGCGCC 1 cut(s) 2729
ErhI CCWWGG 1 cut(s) 2296
Esp3I CGTCTC 1 cut(s) 32
FalI AAGNNNNNCTT 2 cut(s) 2615, 2647
FaqI GGGAC 3 cut(s) 112, 769, 1890
FbaI TGATCA 2 cut(s) 991, 1432
Fnu4HI GCNGC 4 cut(s) 619, 681, 1713, 2959
FokI GGATG 2 cut(s) 1902, 2324
FriOI GRGCYC 1 cut(s) 1163
Fsp4HI GCNGC 4 cut(s) 619, 681, 1713, 2959
FspBI CTAG 4 cut(s) 636, 1052, 1503, 1865
GlaI GCGC 2 cut(s) 829, 2729
GluI GCNGC 4 cut(s) 619, 681, 1713, 2959
GsuI CTGGAG 1 cut(s) 735
HaeII RGCGCY 1 cut(s) 2731
HaeIII GGCC 2 cut(s) 643, 1761
HgaI GACGC 1 cut(s) 2091
HhaI GCGC 2 cut(s) 830, 2730
Hin1I GRCGYC 1 cut(s) 2728
Hin6I GCGC 2 cut(s) 828, 2728
HinP1I GCGC 2 cut(s) 828, 2728
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HindIII AAGCTT 3 cut(s) 371, 1849, 2711
HpaI GTTAAC 1 cut(s) 883
HphI GGTGA 6 cut(s) 269, 710, 1163, 1409, 2178, 2315
Hpy166II GTNNAC 8 cut(s) 6, 460, 883, 1014, 2081, 2629, 2824, 2944
Hpy8I GTNNAC 8 cut(s) 6, 460, 883, 1014, 2081, 2629, 2824, 2944
Hpy99I CGWCG 1 cut(s) 2688
HpyCH4IV ACGT 6 cut(s) 41, 487, 1193, 1451, 2401, 2985
HpyF10VI GCNNNNNNNGC 1 cut(s) 1832
HpySE526I ACGT 6 cut(s) 41, 487, 1193, 1451, 2401, 2985
Hsp92I GRCGYC 1 cut(s) 2728
HspAI GCGC 2 cut(s) 828, 2728
KasI GGCGCC 1 cut(s) 2727
Ksp22I TGATCA 2 cut(s) 991, 1432
KspAI GTTAAC 1 cut(s) 883
LmnI GCTCC 5 cut(s) 236, 835, 873, 1158, 1992
Lsp1109I GCAGC 4 cut(s) 605, 667, 1699, 2945
LweI GCATC 5 cut(s) 395, 1373, 1655, 1924, 2473
MaeI CTAG 4 cut(s) 636, 1052, 1503, 1865
MaeII ACGT 6 cut(s) 41, 487, 1193, 1451, 2401, 2985
MaeIII GTNAC 9 cut(s) 11, 22, 52, 59, 783, 856, 1551, 2453, 2933
MfeI CAATTG 5 cut(s) 774, 1517, 2211, 2355, 2497
MflI RGATCY 4 cut(s) 311, 1078, 2030, 2560
MhlI GDGCHC 1 cut(s) 1163
Mly113I GGCGCC 1 cut(s) 2728
MlyI GAGTC 4 cut(s) 419, 1064, 1217, 2232
MmeI TCCRAC 3 cut(s) 873, 1019, 1598
Mph1103I ATGCAT 1 cut(s) 1917
MroXI GAANNNNTTC 2 cut(s) 1512, 2006
MseI TTAA 9 cut(s) 537, 882, 1440, 1631, 1722, 1812, 2448, 2667, 2952
MslI CAYNNNNRTG 3 cut(s) 470, 823, 2889
MspA1I CMGCKG 1 cut(s) 2602
MspR9I CCNGG 3 cut(s) 131, 753, 1758
MunI CAATTG 5 cut(s) 774, 1517, 2211, 2355, 2497
Mva1269I GAATGC 2 cut(s) 1837, 1917
MvaI CCWGG 3 cut(s) 131, 753, 1758
MwoI GCNNNNNNNGC 1 cut(s) 1832
NarI GGCGCC 1 cut(s) 2728
NlaIV GGNNCC 6 cut(s) 141, 747, 869, 1080, 2032, 2729
NmuCI GTSAC 4 cut(s) 11, 783, 856, 1551
NsiI ATGCAT 1 cut(s) 1917
NspI RCATGY 5 cut(s) 219, 828, 1020, 1772, 2852
NspV TTCGAA 1 cut(s) 1857
PagI TCATGA 2 cut(s) 465, 2737
PciI ACATGT 3 cut(s) 215, 1016, 2848
PctI GAATGC 2 cut(s) 1837, 1917
PdmI GAANNNNTTC 2 cut(s) 1512, 2006
PflMI CCANNNNNTGG 4 cut(s) 254, 758, 892, 1034
PkrI GCNGC 4 cut(s) 620, 682, 1714, 2960
PleI GAGTC 4 cut(s) 418, 1063, 1217, 2231
PluTI GGCGCC 1 cut(s) 2731
PmaCI CACGTG 1 cut(s) 2402
PmlI CACGTG 1 cut(s) 2402
PpsI GAGTC 4 cut(s) 418, 1063, 1217, 2231
Ppu21I YACGTR 3 cut(s) 488, 2402, 2986
PpuMI RGGWCCY 1 cut(s) 746
PscI ACATGT 3 cut(s) 215, 1016, 2848
PshBI ATTAAT 1 cut(s) 1440
PsiI TTATAA 1 cut(s) 1134
Psp124BI GAGCTC 1 cut(s) 1163
Psp5II RGGWCCY 1 cut(s) 746
Psp6I CCWGG 3 cut(s) 129, 751, 1756
PspCI CACGTG 1 cut(s) 2402
PspGI CCWGG 3 cut(s) 129, 751, 1756
PspN4I GGNNCC 6 cut(s) 141, 747, 869, 1080, 2032, 2729
PspPI GGNCC 4 cut(s) 642, 746, 1522, 1973
PspPPI RGGWCCY 1 cut(s) 746
PstI CTGCAG 1 cut(s) 685
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 4 cut(s) 311, 1078, 2030, 2560
RsaI GTAC 6 cut(s) 486, 1642, 2239, 2394, 2853, 2984
RsaNI GTAC 6 cut(s) 485, 1641, 2238, 2393, 2852, 2983
RseI CAYNNNNRTG 3 cut(s) 470, 823, 2889
SacI GAGCTC 1 cut(s) 1163
SaqAI TTAA 9 cut(s) 537, 882, 1440, 1631, 1722, 1812, 2448, 2667, 2952
SatI GCNGC 4 cut(s) 619, 681, 1713, 2959
Sau96I GGNCC 4 cut(s) 642, 746, 1522, 1973
SchI GAGTC 4 cut(s) 419, 1064, 1217, 2232
ScrFI CCNGG 3 cut(s) 131, 753, 1758
SduI GDGCHC 1 cut(s) 1163
SfaNI GCATC 5 cut(s) 395, 1373, 1655, 1924, 2473
SfcI CTRYAG 1 cut(s) 681
SfoI GGCGCC 1 cut(s) 2729
SfuI TTCGAA 1 cut(s) 1857
SinI GGWCC 3 cut(s) 746, 1522, 1973
SmiMI CAYNNNNRTG 3 cut(s) 470, 823, 2889
SmlI CTYRAG 7 cut(s) 89, 115, 977, 1073, 1325, 2012, 2975
SmoI CTYRAG 7 cut(s) 89, 115, 977, 1073, 1325, 2012, 2975
SnaBI TACGTA 1 cut(s) 2986
SpeI ACTAGT 1 cut(s) 1864
SsiI CCGC 4 cut(s) 1644, 2278, 2600, 2744
SspDI GGCGCC 1 cut(s) 2727
SspI AATATT 2 cut(s) 841, 1635
SspMI CTAG 4 cut(s) 636, 1052, 1503, 1865
SstI GAGCTC 1 cut(s) 1163
StyD4I CCNGG 3 cut(s) 129, 751, 1756
StyI CCWWGG 1 cut(s) 2296
TaiI ACGT 6 cut(s) 44, 490, 1196, 1454, 2404, 2988
TaqI TCGA 4 cut(s) 1765, 1857, 1909, 2155
TaqII GACCGA 1 cut(s) 290
TatI WGTACW 2 cut(s) 2392, 2851
Tru1I TTAA 9 cut(s) 537, 882, 1440, 1631, 1722, 1812, 2448, 2667, 2952
Tru9I TTAA 9 cut(s) 537, 882, 1440, 1631, 1722, 1812, 2448, 2667, 2952
TscAI CASTG 6 cut(s) 825, 1282, 1692, 2335, 2417, 2946
TseFI GTSAC 4 cut(s) 11, 783, 856, 1551
TseI GCWGC 4 cut(s) 618, 680, 1712, 2958
Tsp45I GTSAC 4 cut(s) 11, 783, 856, 1551
TspGWI ACGGA 5 cut(s) 246, 372, 1685, 2255, 2573
TspRI CASTG 6 cut(s) 825, 1282, 1692, 2335, 2417, 2946
Van91I CCANNNNNTGG 4 cut(s) 254, 758, 892, 1034
VpaK11BI GGWCC 3 cut(s) 746, 1522, 1973
VspI ATTAAT 1 cut(s) 1440
XagI CCTNNNNNAGG 1 cut(s) 134
XceI RCATGY 5 cut(s) 219, 828, 1020, 1772, 2852
XcmI CCANNNNNNNNNTGG 1 cut(s) 1035
XmnI GAANNNNTTC 2 cut(s) 1512, 2006
XspI CTAG 4 cut(s) 636, 1052, 1503, 1865
Zsp2I ATGCAT 1 cut(s) 1917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.