Rh7DG378000

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000279
Physical Location & Seq
Reverse (-)
51356764 .. 51359504
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG378000.1

Sequence Viewer

Length: 801 bp
ATGCCTCCTGGATTCCTGTGTGTGATAATTATGTCTACTGTCCGATGTAATGGCAATGGGTCAGTTGCTAGTGACTCTGTTTGGAAGAAGCTAGTCCTTGATGCCAAGAAATGGAACTGTTTTTATAATGCTGATGAAGACAGCAACTTGGCTCAGGCTATTACAGCTGCCCTGCTGGAGCTTGACCAACTTCATTCTTTGCTTAATATCGACTCTCTGCTGTTCAAAAATGCTATATGGAAGGTTTGCTTCACTCATGACTTTTTGAACTCCATAACAAAAGTTAAAGACATTGTGATTCTTTGCGAAGTGCTTGCGTTATTAACCAAGCTTTTGAGTGGATGGTGCCGACCTCTTGAGGACAAAGGAACTTTAGTGTATGATGGGACTTCCGCTCAACTGTTAGAGAAGTATAAAATCAAAGGGAACTTGAATCTCATTTGGACTGTAGATATTCTCCAGGAGAATGCACATTACATCCAAATTATGAAGTTTTGGGATATTTTGCCATTTTCTCATATACCAGAACTAGCAAAGCGTCTTGACATTGTTTTTGGGAATTTTACAGTGGACAAAATGAACCGCTGCCGTCACAACGTTGACAGTCATGACTTGATGGAGCTGATTCTTTGTTGTGGACCACATAATCAGGTGAGCATTCCAAATGCAAGCAATGCTTGCTCAGGTTTTGATGATTCGTTCAGGTGGTCTTTCTTTGATTTGACTGTAATTCATGATGACCACAAAGATAGTACAGTAACAGTGCTACAAGCTGATTTTTATCGTGCCAATGAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

266

Amino Acids

30.21

Weight (kDa)

5.54

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 345
AccB7I CCANNNNNTGG 1 cut(s) 111
AccBSI CCGCTC 1 cut(s) 395
AccI GTMKAC 1 cut(s) 35
AciI CCGC 2 cut(s) 393, 583
AclI AACGTT 1 cut(s) 597
AcsI RAATTY 1 cut(s) 559
AfaI GTAC 1 cut(s) 754
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 3 cut(s) 226, 268, 433
AjnI CCWGG 2 cut(s) 7, 459
AluBI AGCT 6 cut(s) 91, 167, 181, 331, 622, 773
AluI AGCT 6 cut(s) 91, 167, 181, 331, 622, 773
ApeKI GCWGC 2 cut(s) 167, 585
ApoI RAATTY 1 cut(s) 559
ArsI GACNNNNNNTTYG 2 cut(s) 536, 568
AspS9I GGNCC 1 cut(s) 638
AsuHPI GGTGA 1 cut(s) 664
AvaII GGWCC 1 cut(s) 638
BanI GGYRCC 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 154, 572
BccI CCATC 3 cut(s) 336, 377, 610
BceAI ACGGC 1 cut(s) 573
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 2 cut(s) 9, 461
BfaI CTAG 3 cut(s) 69, 92, 530
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 2 cut(s) 168, 586
BlsI GCNGC 2 cut(s) 169, 587
Bme1390I CCNGG 2 cut(s) 9, 461
Bme18I GGWCC 1 cut(s) 638
BmgT120I GGNCC 1 cut(s) 638
BmiI GGNNCC 1 cut(s) 347
BmrFI CCNGG 2 cut(s) 9, 461
BmsI GCATC 1 cut(s) 91
BpiI GAAGAC 1 cut(s) 144
BpmI CTGGAG 2 cut(s) 197, 443
Bpu10I CCTNAGC 2 cut(s) 153, 682
BpuEI CTTGAG 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 780
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse3DI GCAATG 2 cut(s) 61, 679
Bse8I GATNNNNATC 1 cut(s) 780
BseBI CCWGG 2 cut(s) 9, 461
BseGI GGATG 2 cut(s) 347, 477
BseJI GATNNNNATC 1 cut(s) 780
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 2 cut(s) 61, 679
BseMII CTCAG 2 cut(s) 167, 696
BseXI GCAGC 2 cut(s) 154, 572
BshNI GGYRCC 1 cut(s) 345
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 400
BsmI GAATGC 2 cut(s) 472, 657
BspACI CCGC 2 cut(s) 393, 583
BspCNI CTCAG 2 cut(s) 166, 695
BspHI TCATGA 3 cut(s) 256, 607, 733
BspLI GGNNCC 1 cut(s) 347
BspT107I GGYRCC 1 cut(s) 345
BsrBI CCGCTC 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 61, 679
Bst2UI CCWGG 2 cut(s) 9, 461
Bst4CI ACNGT 9 cut(s) 40, 119, 402, 448, 568, 605, 727, 757, 763
BstAPI GCANNNNNTGC 2 cut(s) 674, 678
BstC8I GCNNGC 3 cut(s) 315, 670, 679
BstDEI CTNAG 2 cut(s) 153, 682
BstF5I GGATG 2 cut(s) 347, 477
BstMWI GCNNNNNNNGC 3 cut(s) 164, 674, 678
BstNI CCWGG 2 cut(s) 9, 461
BstSCI CCNGG 2 cut(s) 7, 459
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 154, 572
BstV2I GAAGAC 1 cut(s) 144
BtsCI GGATG 2 cut(s) 347, 477
BtsIMutI CAGTG 2 cut(s) 573, 768
Cac8I GCNNGC 3 cut(s) 315, 670, 679
CciI TCATGA 3 cut(s) 256, 607, 733
Cfr13I GGNCC 1 cut(s) 638
CseI GACGC 1 cut(s) 527
Csp6I GTAC 1 cut(s) 753
CviAII CATG 3 cut(s) 257, 608, 734
CviJI RGCY 8 cut(s) 91, 152, 158, 167, 181, 331, 622, 773
CviKI_1 RGCY 8 cut(s) 91, 152, 158, 167, 181, 331, 622, 773
CviQI GTAC 1 cut(s) 753
DdeI CTNAG 2 cut(s) 153, 682
Eco47I GGWCC 1 cut(s) 638
EcoRII CCWGG 2 cut(s) 7, 459
FaeI CATG 3 cut(s) 260, 611, 737
FalI AAGNNNNNCTT 4 cut(s) 233, 265, 661, 693
FaqI GGGAC 1 cut(s) 400
FatI CATG 3 cut(s) 256, 607, 733
FblI GTMKAC 1 cut(s) 35
Fnu4HI GCNGC 2 cut(s) 168, 586
FokI GGATG 2 cut(s) 354, 464
Fsp4HI GCNGC 2 cut(s) 168, 586
FspBI CTAG 3 cut(s) 69, 92, 530
GluI GCNGC 2 cut(s) 168, 586
GsuI CTGGAG 2 cut(s) 197, 443
HgaI GACGC 1 cut(s) 527
Hin1II CATG 3 cut(s) 260, 611, 737
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 7 cut(s) 12, 74, 212, 298, 433, 625, 695
HphI GGTGA 1 cut(s) 664
Hpy166II GTNNAC 4 cut(s) 36, 571, 601, 638
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 5 cut(s) 257, 356, 542, 608, 734
Hpy8I GTNNAC 4 cut(s) 36, 571, 601, 638
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 9 cut(s) 40, 119, 402, 448, 568, 605, 727, 757, 763
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 2 cut(s) 470, 668
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 674, 678
HpyF3I CTNAG 2 cut(s) 153, 682
HpySE526I ACGT 1 cut(s) 597
Hsp92II CATG 3 cut(s) 260, 611, 737
LmnI GCTCC 2 cut(s) 178, 619
Lsp1109I GCAGC 2 cut(s) 154, 572
LweI GCATC 1 cut(s) 91
MaeI CTAG 3 cut(s) 69, 92, 530
MaeII ACGT 1 cut(s) 597
MaeIII GTNAC 3 cut(s) 71, 590, 757
MbiI CCGCTC 1 cut(s) 395
MboII GAAGA 2 cut(s) 97, 149
MluCI AATT 4 cut(s) 27, 483, 559, 729
MlyI GAGTC 2 cut(s) 68, 206
MnlI CCTC 3 cut(s) 15, 352, 363
MseI TTAA 3 cut(s) 204, 285, 323
MspA1I CMGCKG 2 cut(s) 167, 585
MspR9I CCNGG 2 cut(s) 9, 461
Mva1269I GAATGC 2 cut(s) 472, 657
MvaI CCWGG 2 cut(s) 9, 461
MwoI GCNNNNNNNGC 3 cut(s) 164, 674, 678
NlaIII CATG 3 cut(s) 260, 611, 737
NlaIV GGNNCC 1 cut(s) 347
NmuCI GTSAC 2 cut(s) 71, 590
PagI TCATGA 3 cut(s) 256, 607, 733
PctI GAATGC 2 cut(s) 472, 657
PfeI GAWTC 5 cut(s) 12, 298, 433, 625, 695
PflMI CCANNNNNTGG 1 cut(s) 111
PfoI TCCNGGA 2 cut(s) 7, 459
PkrI GCNGC 2 cut(s) 169, 587
PleI GAGTC 2 cut(s) 68, 206
PpsI GAGTC 2 cut(s) 68, 206
PsiI TTATAA 1 cut(s) 126
Psp1406I AACGTT 1 cut(s) 597
Psp6I CCWGG 2 cut(s) 7, 459
PspGI CCWGG 2 cut(s) 7, 459
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 1 cut(s) 638
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 754
RsaNI GTAC 1 cut(s) 753
SaqAI TTAA 3 cut(s) 204, 285, 323
SatI GCNGC 2 cut(s) 168, 586
Sau96I GGNCC 1 cut(s) 638
SchI GAGTC 2 cut(s) 68, 206
ScrFI CCNGG 2 cut(s) 9, 461
SfaNI GCATC 1 cut(s) 91
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 4 cut(s) 27, 483, 559, 729
SsiI CCGC 2 cut(s) 393, 583
SspMI CTAG 3 cut(s) 69, 92, 530
StyD4I CCNGG 2 cut(s) 7, 459
TaaI ACNGT 9 cut(s) 40, 119, 402, 448, 568, 605, 727, 757, 763
TaiI ACGT 1 cut(s) 600
TaqI TCGA 1 cut(s) 210
TasI AATT 4 cut(s) 27, 483, 559, 729
TatI WGTACW 1 cut(s) 752
TfiI GAWTC 5 cut(s) 12, 298, 433, 625, 695
Tru1I TTAA 3 cut(s) 204, 285, 323
Tru9I TTAA 3 cut(s) 204, 285, 323
TscAI CASTG 2 cut(s) 573, 768
TseFI GTSAC 2 cut(s) 71, 590
TseI GCWGC 2 cut(s) 167, 585
Tsp45I GTSAC 2 cut(s) 71, 590
TspDTI ATGAA 5 cut(s) 150, 182, 503, 593, 722
TspRI CASTG 2 cut(s) 573, 768
Van91I CCANNNNNTGG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 638
XapI RAATTY 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 35
XspI CTAG 3 cut(s) 69, 92, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.