AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 720, 1242 |
| AccB1I | GGYRCC | 2 cut(s) | 232, 2934 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 359, 866, 1000 |
| AccII | CGCG | 1 cut(s) | 229 |
| AciI | CCGC | 2 cut(s) | 229, 2488 |
| AclI | AACGTT | 2 cut(s) | 1280, 3192 |
| AcoI | YGGCCR | 1 cut(s) | 3212 |
| AcuI | CTGAAG | 1 cut(s) | 1598 |
| AcvI | CACGTG | 1 cut(s) | 2612 |
| AcyI | GRCGYC | 1 cut(s) | 2935 |
| AdeI | CACNNNGTG | 2 cut(s) | 759, 1769 |
| AfaI | GTAC | 9 cut(s) | 594, 937, 1310, 1601, 1755, 1849, 1874, 2449, 2604 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 228, 229, 359, 835, 866, 985, 1000, 1087, 1142 |
| AflIII | ACRYGT | 4 cut(s) | 595, 932, 2609, 2611 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2973 |
| AhlI | ACTAGT | 2 cut(s) | 1712, 2071 |
| AjnI | CCWGG | 3 cut(s) | 111, 859, 1963 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1805, 1837 |
| Alw21I | GWGCWC | 2 cut(s) | 1370, 2619 |
| Alw26I | GTCTC | 6 cut(s) | 125, 313, 382, 1297, 2745, 3287 |
| Alw44I | GTGCAC | 1 cut(s) | 2615 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 866 |
| Ama87I | CYCGRG | 1 cut(s) | 1670 |
| AoxI | GGCC | 4 cut(s) | 749, 1966, 3212, 3363 |
| ApaLI | GTGCAC | 1 cut(s) | 2615 |
| ApeKI | GCWGC | 5 cut(s) | 726, 788, 1919, 2315, 3165 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 2058, 2090, 2397, 2429, 3116, 3148 |
| AseI | ATTAAT | 1 cut(s) | 1662 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2213, 2920 |
| AspLEI | GCGC | 1 cut(s) | 2937 |
| AspS9I | GGNCC | 4 cut(s) | 750, 854, 1732, 2180 |
| AsuHPI | GGTGA | 7 cut(s) | 374, 818, 1487, 1580, 1651, 2388, 2525 |
| AsuII | TTCGAA | 2 cut(s) | 2064, 2297 |
| AvaI | CYCGRG | 1 cut(s) | 1670 |
| AvaII | GGWCC | 3 cut(s) | 854, 1732, 2180 |
| BaeGI | GKGCMC | 2 cut(s) | 235, 2619 |
| BalI | TGGCCA | 1 cut(s) | 3214 |
| BamHI | GGATCC | 3 cut(s) | 1186, 2237, 3006 |
| BanI | GGYRCC | 2 cut(s) | 232, 2934 |
| BanII | GRGCYC | 1 cut(s) | 1370 |
| BbrPI | CACGTG | 1 cut(s) | 2612 |
| BbsI | GAAGAC | 1 cut(s) | 55 |
| Bbv12I | GWGCWC | 2 cut(s) | 1370, 2619 |
| BbvI | GCAGC | 5 cut(s) | 713, 775, 1906, 2302, 3152 |
| BceAI | ACGGC | 2 cut(s) | 739, 989 |
| BciT130I | CCWGG | 3 cut(s) | 113, 861, 1965 |
| BclI | TGATCA | 2 cut(s) | 1099, 1381 |
| BcoDI | GTCTC | 6 cut(s) | 125, 313, 382, 1297, 2745, 3287 |
| BcuI | ACTAGT | 2 cut(s) | 1712, 2071 |
| BfaI | CTAG | 4 cut(s) | 744, 1160, 1713, 2072 |
| BfmI | CTRYAG | 1 cut(s) | 789 |
| BfoI | RGCGCY | 1 cut(s) | 2938 |
| BisI | GCNGC | 5 cut(s) | 727, 789, 1920, 2316, 3166 |
| BlpI | GCTNAGC | 1 cut(s) | 1923 |
| BlsI | GCNGC | 5 cut(s) | 728, 790, 1921, 2317, 3167 |
| BmcAI | AGTACT | 1 cut(s) | 1310 |
| Bme1390I | CCNGG | 3 cut(s) | 113, 861, 1965 |
| Bme18I | GGWCC | 3 cut(s) | 854, 1732, 2180 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2973 |
| BmeT110I | CYCGRG | 1 cut(s) | 1670 |
| BmgT120I | GGNCC | 4 cut(s) | 750, 854, 1732, 2180 |
| BmiI | GGNNCC | 8 cut(s) | 234, 855, 977, 1188, 1724, 2239, 2936, 3008 |
| BmrFI | CCNGG | 3 cut(s) | 113, 861, 1965 |
| BmsI | GCATC | 8 cut(s) | 500, 1451, 1862, 2131, 2680, 2762, 3329, 3350 |
| BpiI | GAAGAC | 1 cut(s) | 55 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 72, 104, 122, 154 |
| BpmI | CTGGAG | 2 cut(s) | 843, 3275 |
| Bpu10I | CCTNAGC | 1 cut(s) | 732 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1923 |
| Bpu14I | TTCGAA | 2 cut(s) | 2064, 2297 |
| BpuEI | CTTGAG | 7 cut(s) | 193, 203, 1106, 1202, 1424, 2240, 3203 |
| BsaAI | YACGTR | 2 cut(s) | 596, 2612 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2531 |
| BsaHI | GRCGYC | 1 cut(s) | 2935 |
| BsaI | GGTCTC | 1 cut(s) | 382 |
| BsaJI | CCNNGG | 3 cut(s) | 267, 860, 2506 |
| BsaWI | WCCGGW | 1 cut(s) | 3368 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 922, 952, 1292, 1322, 1412, 1442 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 228, 229, 359, 835, 866, 985, 1000, 1087, 1142 |
| Bse1I | ACTGG | 6 cut(s) | 871, 994, 1899, 2110, 2473, 3215 |
| Bse3DI | GCAATG | 2 cut(s) | 369, 2862 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2531 |
| BseBI | CCWGG | 3 cut(s) | 113, 861, 1965 |
| BseDI | CCNNGG | 3 cut(s) | 267, 860, 2506 |
| BseGI | GGATG | 4 cut(s) | 2122, 2182, 2527, 3341 |
| BseJI | GATNNNNATC | 1 cut(s) | 2531 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 228, 229, 359, 835, 866, 985, 1000, 1087, 1142 |
| BseMI | GCAATG | 2 cut(s) | 369, 2862 |
| BseMII | CTCAG | 9 cut(s) | 120, 630, 723, 971, 1448, 1937, 2025, 2756, 2903 |
| BseNI | ACTGG | 6 cut(s) | 871, 994, 1899, 2110, 2473, 3215 |
| BseRI | GAGGAG | 6 cut(s) | 331, 525, 528, 1066, 1421, 1550 |
| BseSI | GKGCMC | 2 cut(s) | 235, 2619 |
| BseXI | GCAGC | 5 cut(s) | 713, 775, 1906, 2302, 3152 |
| BsgI | GTGCAG | 1 cut(s) | 940 |
| Bsh1236I | CGCG | 1 cut(s) | 229 |
| BshFI | GGCC | 4 cut(s) | 751, 1968, 3214, 3365 |
| BshNI | GGYRCC | 2 cut(s) | 232, 2934 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1370, 2619 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1670 |
| BsiSI | CCGG | 1 cut(s) | 3369 |
| BsiWI | CGTACG | 1 cut(s) | 592 |
| BslFI | GGGAC | 4 cut(s) | 205, 877, 2097, 3308 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 228, 229, 359, 835, 866, 985, 1000, 1087, 1142 |
| BsmAI | GTCTC | 6 cut(s) | 125, 313, 382, 1297, 2745, 3287 |
| BsmBI | CGTCTC | 1 cut(s) | 125 |
| BsmFI | GGGAC | 4 cut(s) | 205, 877, 2097, 3308 |
| BsmI | GAATGC | 2 cut(s) | 2044, 2124 |
| BsnI | GGCC | 4 cut(s) | 751, 1968, 3214, 3365 |
| Bso31I | GGTCTC | 1 cut(s) | 382 |
| BsoBI | CYCGRG | 1 cut(s) | 1670 |
| Bsp119I | TTCGAA | 2 cut(s) | 2064, 2297 |
| Bsp1286I | GDGCHC | 3 cut(s) | 235, 1370, 2619 |
| Bsp1407I | TGTACA | 2 cut(s) | 1599, 1872 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1923 |
| BspACI | CCGC | 2 cut(s) | 229, 2488 |
| BspANI | GGCC | 4 cut(s) | 751, 1968, 3214, 3365 |
| BspCNI | CTCAG | 9 cut(s) | 121, 629, 724, 972, 1447, 1936, 2026, 2755, 2904 |
| BspFNI | CGCG | 1 cut(s) | 229 |
| BspHI | TCATGA | 2 cut(s) | 573, 2944 |
| BspLI | GGNNCC | 8 cut(s) | 234, 855, 977, 1188, 1724, 2239, 2936, 3008 |
| BspMAI | CTGCAG | 1 cut(s) | 793 |
| BspQI | GCTCTTC | 1 cut(s) | 533 |
| BspT104I | TTCGAA | 2 cut(s) | 2064, 2297 |
| BspT107I | GGYRCC | 2 cut(s) | 232, 2934 |
| BspTNI | GGTCTC | 1 cut(s) | 382 |
| BsrDI | GCAATG | 2 cut(s) | 369, 2862 |
| BsrGI | TGTACA | 2 cut(s) | 1599, 1872 |
| BsrI | ACTGG | 6 cut(s) | 871, 994, 1899, 2110, 2473, 3215 |
| BssECI | CCNNGG | 3 cut(s) | 267, 860, 2506 |
| BssNI | GRCGYC | 1 cut(s) | 2935 |
| BssT1I | CCWWGG | 2 cut(s) | 267, 2506 |
| Bst2UI | CCWGG | 3 cut(s) | 113, 861, 1965 |
| Bst6I | CTCTTC | 2 cut(s) | 533, 2511 |
| BstACI | GRCGYC | 1 cut(s) | 2935 |
| BstAUI | TGTACA | 2 cut(s) | 1599, 1872 |
| BstBAI | YACGTR | 2 cut(s) | 596, 2612 |
| BstBI | TTCGAA | 2 cut(s) | 2064, 2297 |
| BstC8I | GCNNGC | 4 cut(s) | 231, 1834, 1977, 3303 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1085 |
| BstF5I | GGATG | 4 cut(s) | 2122, 2182, 2527, 3341 |
| BstFNI | CGCG | 1 cut(s) | 229 |
| BstH2I | RGCGCY | 1 cut(s) | 2938 |
| BstHHI | GCGC | 1 cut(s) | 2937 |
| BstMAI | GTCTC | 6 cut(s) | 125, 313, 382, 1297, 2745, 3287 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 2039 |
| BstNI | CCWGG | 3 cut(s) | 113, 861, 1965 |
| BstNSI | RCATGY | 2 cut(s) | 936, 1979 |
| BstSCI | CCNGG | 3 cut(s) | 111, 859, 1963 |
| BstSFI | CTRYAG | 1 cut(s) | 789 |
| BstSLI | GKGCMC | 2 cut(s) | 235, 2619 |
| BstUI | CGCG | 1 cut(s) | 229 |
| BstV1I | GCAGC | 5 cut(s) | 713, 775, 1906, 2302, 3152 |
| BstV2I | GAAGAC | 1 cut(s) | 55 |
| BstX2I | RGATCY | 5 cut(s) | 416, 1186, 2237, 2767, 3006 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3210 |
| BstYI | RGATCY | 5 cut(s) | 416, 1186, 2237, 2767, 3006 |
| BsuRI | GGCC | 4 cut(s) | 751, 1968, 3214, 3365 |
| BtsCI | GGATG | 4 cut(s) | 2122, 2182, 2527, 3341 |
| BtsI | GCAGTG | 1 cut(s) | 3244 |
| BtsIMutI | CAGTG | 9 cut(s) | 926, 1313, 1360, 1892, 2538, 2617, 3153, 3222, 3244 |
| Cac8I | GCNNGC | 4 cut(s) | 231, 1834, 1977, 3303 |
| CaiI | CAGNNNCTG | 1 cut(s) | 866 |
| CciI | TCATGA | 2 cut(s) | 573, 2944 |
| CfoI | GCGC | 1 cut(s) | 2937 |
| Cfr13I | GGNCC | 4 cut(s) | 750, 854, 1732, 2180 |
| CseI | GACGC | 1 cut(s) | 3107 |
| CsiI | ACCWGGT | 1 cut(s) | 111 |
| Csp6I | GTAC | 9 cut(s) | 593, 936, 1309, 1600, 1754, 1848, 1873, 2448, 2603 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 931, 966, 3334, 3369 |
| CviQI | GTAC | 9 cut(s) | 593, 936, 1309, 1600, 1754, 1848, 1873, 2448, 2603 |
| DinI | GGCGCC | 1 cut(s) | 2936 |
| DraIII | CACNNNGTG | 2 cut(s) | 759, 1769 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2973 |
| EaeI | YGGCCR | 1 cut(s) | 3212 |
| Eam1104I | CTCTTC | 2 cut(s) | 533, 2511 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2973 |
| EarI | CTCTTC | 2 cut(s) | 533, 2511 |
| Ecl136II | GAGCTC | 1 cut(s) | 1368 |
| Eco130I | CCWWGG | 2 cut(s) | 267, 2506 |
| Eco24I | GRGCYC | 1 cut(s) | 1370 |
| Eco31I | GGTCTC | 1 cut(s) | 382 |
| Eco32I | GATATC | 1 cut(s) | 367 |
| Eco47I | GGWCC | 3 cut(s) | 854, 1732, 2180 |
| Eco53kI | GAGCTC | 1 cut(s) | 1368 |
| Eco57I | CTGAAG | 1 cut(s) | 1598 |
| Eco72I | CACGTG | 1 cut(s) | 2612 |
| Eco88I | CYCGRG | 1 cut(s) | 1670 |
| EcoICRI | GAGCTC | 1 cut(s) | 1368 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1085 |
| EcoO109I | RGGNCCY | 1 cut(s) | 854 |
| EcoRI | GAATTC | 3 cut(s) | 691, 2354, 3046 |
| EcoRII | CCWGG | 3 cut(s) | 111, 859, 1963 |
| EcoRV | GATATC | 1 cut(s) | 367 |
| EcoT14I | CCWWGG | 2 cut(s) | 267, 2506 |
| EcoT22I | ATGCAT | 2 cut(s) | 2124, 3343 |
| EcoT38I | GRGCYC | 1 cut(s) | 1370 |
| EgeI | GGCGCC | 1 cut(s) | 2936 |
| EheI | GGCGCC | 1 cut(s) | 2936 |
| ErhI | CCWWGG | 2 cut(s) | 267, 2506 |
| Esp3I | CGTCTC | 1 cut(s) | 125 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2262, 2294, 2822, 2854 |
| FaqI | GGGAC | 4 cut(s) | 205, 877, 2097, 3308 |
| FauI | CCCGC | 1 cut(s) | 222 |
| FauNDI | CATATG | 1 cut(s) | 346 |
| FbaI | TGATCA | 2 cut(s) | 1099, 1381 |
| Fnu4HI | GCNGC | 5 cut(s) | 727, 789, 1920, 2316, 3166 |
| FokI | GGATG | 4 cut(s) | 2109, 2189, 2534, 3328 |
| FriOI | GRGCYC | 1 cut(s) | 1370 |
| Fsp4HI | GCNGC | 5 cut(s) | 727, 789, 1920, 2316, 3166 |
| FspBI | CTAG | 4 cut(s) | 744, 1160, 1713, 2072 |
| GlaI | GCGC | 1 cut(s) | 2936 |
| GluI | GCNGC | 5 cut(s) | 727, 789, 1920, 2316, 3166 |
| GsuI | CTGGAG | 2 cut(s) | 843, 3275 |
| HaeII | RGCGCY | 1 cut(s) | 2938 |
| HaeIII | GGCC | 4 cut(s) | 751, 1968, 3214, 3365 |
| HapII | CCGG | 1 cut(s) | 3369 |
| HgaI | GACGC | 1 cut(s) | 3107 |
| HhaI | GCGC | 1 cut(s) | 2937 |
| Hin1I | GRCGYC | 1 cut(s) | 2935 |
| Hin6I | GCGC | 1 cut(s) | 2935 |
| HinP1I | GCGC | 1 cut(s) | 2935 |
| HincII | GTYRAC | 1 cut(s) | 991 |
| HindII | GTYRAC | 1 cut(s) | 991 |
| HindIII | AAGCTT | 3 cut(s) | 476, 2056, 2918 |
| HpaI | GTTAAC | 1 cut(s) | 991 |
| HpaII | CCGG | 1 cut(s) | 3369 |
| HphI | GGTGA | 7 cut(s) | 374, 818, 1487, 1580, 1651, 2388, 2525 |
| Hpy166II | GTNNAC | 9 cut(s) | 568, 991, 1602, 1875, 2288, 2617, 2836, 3031, 3151 |
| Hpy8I | GTNNAC | 9 cut(s) | 568, 991, 1602, 1875, 2288, 2617, 2836, 3031, 3151 |
| Hpy99I | CGWCG | 1 cut(s) | 2895 |
| HpyCH4IV | ACGT | 7 cut(s) | 134, 591, 595, 1280, 1529, 2611, 3192 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 2039 |
| HpySE526I | ACGT | 7 cut(s) | 134, 591, 595, 1280, 1529, 2611, 3192 |
| Hsp92I | GRCGYC | 1 cut(s) | 2935 |
| HspAI | GCGC | 1 cut(s) | 2935 |
| KasI | GGCGCC | 1 cut(s) | 2934 |
| Ksp22I | TGATCA | 2 cut(s) | 1099, 1381 |
| KspAI | GTTAAC | 1 cut(s) | 991 |
| LguI | GCTCTTC | 1 cut(s) | 533 |
| LmnI | GCTCC | 4 cut(s) | 45, 341, 981, 1365 |
| Lsp1109I | GCAGC | 5 cut(s) | 713, 775, 1906, 2302, 3152 |
| LweI | GCATC | 8 cut(s) | 500, 1451, 1862, 2131, 2680, 2762, 3329, 3350 |
| MabI | ACCWGGT | 1 cut(s) | 111 |
| MaeI | CTAG | 4 cut(s) | 744, 1160, 1713, 2072 |
| MaeII | ACGT | 7 cut(s) | 134, 591, 595, 1280, 1529, 2611, 3192 |
| MaeIII | GTNAC | 7 cut(s) | 115, 145, 152, 891, 964, 2660, 3140 |
| MfeI | CAATTG | 5 cut(s) | 882, 1727, 2421, 2565, 2704 |
| MflI | RGATCY | 5 cut(s) | 416, 1186, 2237, 2767, 3006 |
| MhlI | GDGCHC | 3 cut(s) | 235, 1370, 2619 |
| MlsI | TGGCCA | 1 cut(s) | 3214 |
| MluNI | TGGCCA | 1 cut(s) | 3214 |
| Mly113I | GGCGCC | 1 cut(s) | 2935 |
| MlyI | GAGTC | 4 cut(s) | 527, 1172, 1682, 2442 |
| MmeI | TCCRAC | 4 cut(s) | 16, 1127, 1808, 3369 |
| Mox20I | TGGCCA | 1 cut(s) | 3214 |
| Mph1103I | ATGCAT | 2 cut(s) | 2124, 3343 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2213, 2920 |
| MscI | TGGCCA | 1 cut(s) | 3214 |
| MslI | CAYNNNNRTG | 3 cut(s) | 578, 931, 3096 |
| Msp20I | TGGCCA | 1 cut(s) | 3214 |
| MspA1I | CMGCKG | 2 cut(s) | 2980, 3305 |
| MspI | CCGG | 1 cut(s) | 3369 |
| MspR9I | CCNGG | 3 cut(s) | 113, 861, 1965 |
| MunI | CAATTG | 5 cut(s) | 882, 1727, 2421, 2565, 2704 |
| Mva1269I | GAATGC | 2 cut(s) | 2044, 2124 |
| MvaI | CCWGG | 3 cut(s) | 113, 861, 1965 |
| MvnI | CGCG | 1 cut(s) | 229 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 2039 |
| NarI | GGCGCC | 1 cut(s) | 2935 |
| NdeI | CATATG | 1 cut(s) | 346 |
| NlaIV | GGNNCC | 8 cut(s) | 234, 855, 977, 1188, 1724, 2239, 2936, 3008 |
| NmuCI | GTSAC | 2 cut(s) | 891, 964 |
| NsiI | ATGCAT | 2 cut(s) | 2124, 3343 |
| NspI | RCATGY | 2 cut(s) | 936, 1979 |
| NspV | TTCGAA | 2 cut(s) | 2064, 2297 |
| PaeI | GCATGC | 1 cut(s) | 1979 |
| PaeR7I | CTCGAG | 1 cut(s) | 1670 |
| PagI | TCATGA | 2 cut(s) | 573, 2944 |
| PciI | ACATGT | 1 cut(s) | 932 |
| PciSI | GCTCTTC | 1 cut(s) | 533 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 146 |
| PctI | GAATGC | 2 cut(s) | 2044, 2124 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2213, 2920 |
| Pfl23II | CGTACG | 1 cut(s) | 592 |
| PflFI | GACNNNGTC | 1 cut(s) | 2650 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 359, 866, 1000 |
| PkrI | GCNGC | 5 cut(s) | 728, 790, 1921, 2317, 3167 |
| PleI | GAGTC | 4 cut(s) | 526, 1171, 1681, 2441 |
| PluTI | GGCGCC | 1 cut(s) | 2938 |
| PmaCI | CACGTG | 1 cut(s) | 2612 |
| PmlI | CACGTG | 1 cut(s) | 2612 |
| PpsI | GAGTC | 4 cut(s) | 526, 1171, 1681, 2441 |
| Ppu21I | YACGTR | 2 cut(s) | 596, 2612 |
| PpuMI | RGGWCCY | 1 cut(s) | 854 |
| PscI | ACATGT | 1 cut(s) | 932 |
| PshBI | ATTAAT | 1 cut(s) | 1662 |
| PsiI | TTATAA | 2 cut(s) | 720, 1242 |
| Psp124BI | GAGCTC | 1 cut(s) | 1370 |
| Psp1406I | AACGTT | 2 cut(s) | 1280, 3192 |
| Psp5II | RGGWCCY | 1 cut(s) | 854 |
| Psp6I | CCWGG | 3 cut(s) | 111, 859, 1963 |
| PspCI | CACGTG | 1 cut(s) | 2612 |
| PspGI | CCWGG | 3 cut(s) | 111, 859, 1963 |
| PspLI | CGTACG | 1 cut(s) | 592 |
| PspN4I | GGNNCC | 8 cut(s) | 234, 855, 977, 1188, 1724, 2239, 2936, 3008 |
| PspPI | GGNCC | 4 cut(s) | 750, 854, 1732, 2180 |
| PspPPI | RGGWCCY | 1 cut(s) | 854 |
| PstI | CTGCAG | 1 cut(s) | 793 |
| PstNI | CAGNNNCTG | 1 cut(s) | 866 |
| PsuI | RGATCY | 5 cut(s) | 416, 1186, 2237, 2767, 3006 |
| PsyI | GACNNNGTC | 1 cut(s) | 2650 |
| PvuII | CAGCTG | 2 cut(s) | 2980, 3305 |
| RsaI | GTAC | 9 cut(s) | 594, 937, 1310, 1601, 1755, 1849, 1874, 2449, 2604 |
| RsaNI | GTAC | 9 cut(s) | 593, 936, 1309, 1600, 1754, 1848, 1873, 2448, 2603 |
| RseI | CAYNNNNRTG | 3 cut(s) | 578, 931, 3096 |
| SacI | GAGCTC | 1 cut(s) | 1370 |
| SapI | GCTCTTC | 1 cut(s) | 533 |
| SatI | GCNGC | 5 cut(s) | 727, 789, 1920, 2316, 3166 |
| Sau96I | GGNCC | 4 cut(s) | 750, 854, 1732, 2180 |
| ScaI | AGTACT | 1 cut(s) | 1310 |
| SchI | GAGTC | 4 cut(s) | 527, 1172, 1682, 2442 |
| ScrFI | CCNGG | 3 cut(s) | 113, 861, 1965 |
| SduI | GDGCHC | 3 cut(s) | 235, 1370, 2619 |
| SexAI | ACCWGGT | 1 cut(s) | 111 |
| SfaNI | GCATC | 8 cut(s) | 500, 1451, 1862, 2131, 2680, 2762, 3329, 3350 |
| SfcI | CTRYAG | 1 cut(s) | 789 |
| SfoI | GGCGCC | 1 cut(s) | 2936 |
| Sfr274I | CTCGAG | 1 cut(s) | 1670 |
| SfuI | TTCGAA | 2 cut(s) | 2064, 2297 |
| SinI | GGWCC | 3 cut(s) | 854, 1732, 2180 |
| SlaI | CTCGAG | 1 cut(s) | 1670 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 578, 931, 3096 |
| SmlI | CTYRAG | 8 cut(s) | 182, 208, 1085, 1181, 1403, 1670, 2219, 3182 |
| SmoI | CTYRAG | 8 cut(s) | 182, 208, 1085, 1181, 1403, 1670, 2219, 3182 |
| SpeI | ACTAGT | 2 cut(s) | 1712, 2071 |
| SphI | GCATGC | 1 cut(s) | 1979 |
| SsiI | CCGC | 2 cut(s) | 229, 2488 |
| SspDI | GGCGCC | 1 cut(s) | 2934 |
| SspI | AATATT | 4 cut(s) | 949, 1842, 2232, 3224 |
| SspMI | CTAG | 4 cut(s) | 744, 1160, 1713, 2072 |
| SstI | GAGCTC | 1 cut(s) | 1370 |
| StyD4I | CCNGG | 3 cut(s) | 111, 859, 1963 |
| StyI | CCWWGG | 2 cut(s) | 267, 2506 |
| TaiI | ACGT | 7 cut(s) | 137, 594, 598, 1283, 1532, 2614, 3195 |
| TaqI | TCGA | 6 cut(s) | 140, 1671, 2064, 2116, 2297, 2362 |
| TatI | WGTACW | 7 cut(s) | 935, 1308, 1599, 1753, 1847, 1872, 2602 |
| TscAI | CASTG | 9 cut(s) | 933, 1320, 1360, 1899, 2545, 2624, 3153, 3222, 3244 |
| TseFI | GTSAC | 2 cut(s) | 891, 964 |
| TseI | GCWGC | 5 cut(s) | 726, 788, 1919, 2315, 3165 |
| Tsp45I | GTSAC | 2 cut(s) | 891, 964 |
| TspGWI | ACGGA | 2 cut(s) | 1892, 2465 |
| TspRI | CASTG | 9 cut(s) | 933, 1320, 1360, 1899, 2545, 2624, 3153, 3222, 3244 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2650 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 359, 866, 1000 |
| VneI | GTGCAC | 1 cut(s) | 2615 |
| VpaK11BI | GGWCC | 3 cut(s) | 854, 1732, 2180 |
| VspI | ATTAAT | 1 cut(s) | 1662 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1085 |
| XceI | RCATGY | 2 cut(s) | 936, 1979 |
| XhoI | CTCGAG | 1 cut(s) | 1670 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2213, 2920 |
| XspI | CTAG | 4 cut(s) | 744, 1160, 1713, 2072 |
| ZrmI | AGTACT | 1 cut(s) | 1310 |
| Zsp2I | ATGCAT | 2 cut(s) | 2124, 3343 |