AAA domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AAA_12 | PF13087 | 4 - 108 | 5.3e-22 | AAA domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 120, 830 |
| AccI | GTMKAC | 1 cut(s) | 1070 |
| AccII | CGCG | 1 cut(s) | 679 |
| AciI | CCGC | 1 cut(s) | 925 |
| AclI | AACGTT | 1 cut(s) | 1338 |
| AclWI | GGATC | 2 cut(s) | 1208, 1412 |
| AcoI | YGGCCR | 1 cut(s) | 974 |
| AcsI | RAATTY | 4 cut(s) | 47, 125, 902, 1427 |
| AcuI | CTGAAG | 1 cut(s) | 1194 |
| AcvI | CACGTG | 1 cut(s) | 378 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AflIII | ACRYGT | 2 cut(s) | 375, 1494 |
| AgsI | TTSAA | 6 cut(s) | 197, 568, 610, 1026, 1208, 1412 |
| AjnI | CCWGG | 1 cut(s) | 801 |
| AluBI | AGCT | 6 cut(s) | 432, 523, 742, 1055, 1211, 1415 |
| AluI | AGCT | 6 cut(s) | 432, 523, 742, 1055, 1211, 1415 |
| Alw26I | GTCTC | 3 cut(s) | 100, 1082, 1289 |
| AlwI | GGATC | 2 cut(s) | 1208, 1412 |
| AoxI | GGCC | 1 cut(s) | 974 |
| ApeKI | GCWGC | 2 cut(s) | 927, 1094 |
| ApoI | RAATTY | 4 cut(s) | 47, 125, 902, 1427 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 878, 910, 1019, 1051 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1190, 1394 |
| AspLEI | GCGC | 1 cut(s) | 690 |
| AsuHPI | GGTGA | 5 cut(s) | 159, 290, 611, 979, 1443 |
| BaeGI | GKGCMC | 1 cut(s) | 771 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 945, 978 |
| BbrPI | CACGTG | 1 cut(s) | 378 |
| BbsI | GAAGAC | 3 cut(s) | 486, 1029, 1182 |
| BbvI | GCAGC | 2 cut(s) | 914, 1106 |
| BccI | CCATC | 4 cut(s) | 257, 678, 719, 966 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1092, 1126, 1296, 1330 |
| BciT130I | CCWGG | 1 cut(s) | 803 |
| BciVI | GTATCC | 1 cut(s) | 946 |
| BclI | TGATCA | 2 cut(s) | 52, 1006 |
| BcoDI | GTCTC | 3 cut(s) | 100, 1082, 1289 |
| BfaI | CTAG | 5 cut(s) | 518, 644, 872, 1256, 1460 |
| BfmI | CTRYAG | 3 cut(s) | 90, 789, 999 |
| BfoI | RGCGCY | 1 cut(s) | 691 |
| BfuI | GTATCC | 1 cut(s) | 946 |
| BisI | GCNGC | 2 cut(s) | 928, 1095 |
| BlpI | GCTNAGC | 1 cut(s) | 738 |
| BlsI | GCNGC | 2 cut(s) | 929, 1096 |
| Bme1390I | CCNGG | 1 cut(s) | 803 |
| BmiI | GGNNCC | 1 cut(s) | 269 |
| BmrFI | CCNGG | 1 cut(s) | 803 |
| BmsI | GCATC | 4 cut(s) | 403, 432, 1283, 1487 |
| BpiI | GAAGAC | 3 cut(s) | 486, 1029, 1182 |
| Bpu10I | CCTNAGC | 1 cut(s) | 495 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 738 |
| BpuEI | CTTGAG | 1 cut(s) | 165 |
| Bsa29I | ATCGAT | 2 cut(s) | 1112, 1316 |
| BsaAI | YACGTR | 1 cut(s) | 378 |
| BsaJI | CCNNGG | 1 cut(s) | 271 |
| Bse118I | RCCGGY | 1 cut(s) | 976 |
| Bse1I | ACTGG | 3 cut(s) | 223, 238, 601 |
| BseBI | CCWGG | 1 cut(s) | 803 |
| BseCI | ATCGAT | 2 cut(s) | 1112, 1316 |
| BseDI | CCNNGG | 1 cut(s) | 271 |
| BseGI | GGATG | 1 cut(s) | 689 |
| BseMII | CTCAG | 3 cut(s) | 90, 509, 752 |
| BseNI | ACTGG | 3 cut(s) | 223, 238, 601 |
| BseRI | GAGGAG | 2 cut(s) | 684, 1028 |
| BseSI | GKGCMC | 1 cut(s) | 771 |
| BseXI | GCAGC | 2 cut(s) | 914, 1106 |
| Bsh1236I | CGCG | 1 cut(s) | 679 |
| BshFI | GGCC | 1 cut(s) | 976 |
| BshVI | ATCGAT | 2 cut(s) | 1112, 1316 |
| BsiSI | CCGG | 1 cut(s) | 977 |
| BsmAI | GTCTC | 3 cut(s) | 100, 1082, 1289 |
| BsmI | GAATGC | 1 cut(s) | 814 |
| BsnI | GGCC | 1 cut(s) | 976 |
| Bsp1286I | GDGCHC | 1 cut(s) | 771 |
| Bsp143I | GATC | 6 cut(s) | 8, 52, 254, 1006, 1213, 1417 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 738 |
| BspACI | CCGC | 1 cut(s) | 925 |
| BspANI | GGCC | 1 cut(s) | 976 |
| BspCNI | CTCAG | 3 cut(s) | 91, 508, 751 |
| BspDI | ATCGAT | 2 cut(s) | 1112, 1316 |
| BspFNI | CGCG | 1 cut(s) | 679 |
| BspHI | TCATGA | 1 cut(s) | 1009 |
| BspLI | GGNNCC | 1 cut(s) | 269 |
| BspPI | GGATC | 2 cut(s) | 1208, 1412 |
| BsrFI | RCCGGY | 1 cut(s) | 976 |
| BsrI | ACTGG | 3 cut(s) | 223, 238, 601 |
| BssAI | RCCGGY | 1 cut(s) | 976 |
| BssECI | CCNNGG | 1 cut(s) | 271 |
| BssMI | GATC | 6 cut(s) | 8, 52, 254, 1006, 1213, 1417 |
| BssT1I | CCWWGG | 1 cut(s) | 271 |
| Bst2UI | CCWGG | 1 cut(s) | 803 |
| Bst4CI | ACNGT | 5 cut(s) | 307, 461, 790, 910, 958 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 366 |
| BstBAI | YACGTR | 1 cut(s) | 378 |
| BstC8I | GCNNGC | 3 cut(s) | 112, 657, 932 |
| BstDEI | CTNAG | 6 cut(s) | 99, 495, 738, 1125, 1250, 1329 |
| BstF5I | GGATG | 1 cut(s) | 689 |
| BstFNI | CGCG | 1 cut(s) | 679 |
| BstH2I | RGCGCY | 1 cut(s) | 691 |
| BstHHI | GCGC | 1 cut(s) | 690 |
| BstKTI | GATC | 6 cut(s) | 11, 55, 257, 1009, 1216, 1420 |
| BstMAI | GTCTC | 3 cut(s) | 100, 1082, 1289 |
| BstMBI | GATC | 6 cut(s) | 8, 52, 254, 1006, 1213, 1417 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 366, 685, 1100 |
| BstNI | CCWGG | 1 cut(s) | 803 |
| BstNSI | RCATGY | 1 cut(s) | 1498 |
| BstSCI | CCNGG | 1 cut(s) | 801 |
| BstSFI | CTRYAG | 3 cut(s) | 90, 789, 999 |
| BstSLI | GKGCMC | 1 cut(s) | 771 |
| BstUI | CGCG | 1 cut(s) | 679 |
| BstV1I | GCAGC | 2 cut(s) | 914, 1106 |
| BstV2I | GAAGAC | 3 cut(s) | 486, 1029, 1182 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 972, 1291 |
| Bsu15I | ATCGAT | 2 cut(s) | 1112, 1316 |
| BsuI | GTATCC | 1 cut(s) | 946 |
| BsuRI | GGCC | 1 cut(s) | 976 |
| BsuTUI | ATCGAT | 2 cut(s) | 1112, 1316 |
| BtgZI | GCGATG | 1 cut(s) | 325 |
| BtsCI | GGATG | 1 cut(s) | 689 |
| BtsIMutI | CAGTG | 4 cut(s) | 594, 915, 1284, 1488 |
| Cac8I | GCNNGC | 3 cut(s) | 112, 657, 932 |
| CciI | TCATGA | 1 cut(s) | 1009 |
| CfoI | GCGC | 1 cut(s) | 690 |
| Cfr10I | RCCGGY | 1 cut(s) | 976 |
| ClaI | ATCGAT | 2 cut(s) | 1112, 1316 |
| CseI | GACGC | 1 cut(s) | 869 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 4 cut(s) | 772, 1010, 1291, 1495 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 6 cut(s) | 99, 495, 738, 1125, 1250, 1329 |
| DpnI | GATC | 6 cut(s) | 10, 54, 256, 1008, 1215, 1419 |
| DpnII | GATC | 6 cut(s) | 8, 52, 254, 1006, 1213, 1417 |
| EaeI | YGGCCR | 1 cut(s) | 974 |
| Eco130I | CCWWGG | 1 cut(s) | 271 |
| Eco57I | CTGAAG | 1 cut(s) | 1194 |
| Eco72I | CACGTG | 1 cut(s) | 378 |
| EcoRI | GAATTC | 1 cut(s) | 1427 |
| EcoRII | CCWGG | 1 cut(s) | 801 |
| EcoT14I | CCWWGG | 1 cut(s) | 271 |
| EcoT22I | ATGCAT | 2 cut(s) | 396, 944 |
| ErhI | CCWWGG | 1 cut(s) | 271 |
| FaeI | CATG | 4 cut(s) | 775, 1013, 1294, 1498 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 575, 607 |
| FatI | CATG | 4 cut(s) | 771, 1009, 1290, 1494 |
| FauNDI | CATATG | 1 cut(s) | 1081 |
| FbaI | TGATCA | 2 cut(s) | 52, 1006 |
| FblI | GTMKAC | 1 cut(s) | 1070 |
| Fnu4HI | GCNGC | 2 cut(s) | 928, 1095 |
| FokI | GGATG | 1 cut(s) | 696 |
| Fsp4HI | GCNGC | 2 cut(s) | 928, 1095 |
| FspBI | CTAG | 5 cut(s) | 518, 644, 872, 1256, 1460 |
| GlaI | GCGC | 1 cut(s) | 689 |
| GluI | GCNGC | 2 cut(s) | 928, 1095 |
| HaeII | RGCGCY | 1 cut(s) | 691 |
| HaeIII | GGCC | 1 cut(s) | 976 |
| HapII | CCGG | 1 cut(s) | 977 |
| HgaI | GACGC | 1 cut(s) | 869 |
| HhaI | GCGC | 1 cut(s) | 690 |
| Hin1II | CATG | 4 cut(s) | 775, 1013, 1294, 1498 |
| Hin6I | GCGC | 1 cut(s) | 688 |
| HinP1I | GCGC | 1 cut(s) | 688 |
| HincII | GTYRAC | 1 cut(s) | 1071 |
| HindII | GTYRAC | 1 cut(s) | 1071 |
| HindIII | AAGCTT | 1 cut(s) | 430 |
| HinfI | GANTC | 3 cut(s) | 415, 640, 775 |
| HpaII | CCGG | 1 cut(s) | 977 |
| HphI | GGTGA | 5 cut(s) | 159, 290, 611, 979, 1443 |
| Hpy166II | GTNNAC | 1 cut(s) | 1071 |
| Hpy188I | TCNGA | 4 cut(s) | 69, 100, 229, 1378 |
| Hpy188III | TCNNGA | 2 cut(s) | 884, 1010 |
| Hpy8I | GTNNAC | 1 cut(s) | 1071 |
| Hpy99I | CGWCG | 1 cut(s) | 1072 |
| HpyAV | CCTTC | 5 cut(s) | 28, 577, 1180, 1376, 1384 |
| HpyCH4III | ACNGT | 5 cut(s) | 307, 461, 790, 910, 958 |
| HpyCH4IV | ACGT | 3 cut(s) | 377, 1067, 1338 |
| HpyCH4V | TGCA | 7 cut(s) | 191, 369, 381, 394, 812, 930, 942 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 366, 685, 1100 |
| HpyF3I | CTNAG | 6 cut(s) | 99, 495, 738, 1125, 1250, 1329 |
| HpySE526I | ACGT | 3 cut(s) | 377, 1067, 1338 |
| Hsp92II | CATG | 4 cut(s) | 775, 1013, 1294, 1498 |
| HspAI | GCGC | 1 cut(s) | 688 |
| Ksp22I | TGATCA | 2 cut(s) | 52, 1006 |
| Kzo9I | GATC | 6 cut(s) | 8, 52, 254, 1006, 1213, 1417 |
| Lsp1109I | GCAGC | 2 cut(s) | 914, 1106 |
| LweI | GCATC | 4 cut(s) | 403, 432, 1283, 1487 |
| MaeI | CTAG | 5 cut(s) | 518, 644, 872, 1256, 1460 |
| MaeII | ACGT | 3 cut(s) | 377, 1067, 1338 |
| MaeIII | GTNAC | 3 cut(s) | 405, 412, 599 |
| MalI | GATC | 6 cut(s) | 10, 54, 256, 1008, 1215, 1419 |
| MboI | GATC | 6 cut(s) | 8, 52, 254, 1006, 1213, 1417 |
| MboII | GAAGA | 9 cut(s) | 144, 154, 293, 296, 438, 491, 1029, 1187, 1391 |
| MhlI | GDGCHC | 1 cut(s) | 771 |
| MluCI | AATT | 7 cut(s) | 47, 125, 192, 294, 624, 902, 1427 |
| MlyI | GAGTC | 1 cut(s) | 409 |
| MmeI | TCCRAC | 1 cut(s) | 47 |
| MnlI | CCTC | 3 cut(s) | 76, 705, 1006 |
| Mph1103I | ATGCAT | 2 cut(s) | 396, 944 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1190, 1394 |
| MseI | TTAA | 5 cut(s) | 546, 627, 665, 1140, 1341 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1289, 1493 |
| MspA1I | CMGCKG | 2 cut(s) | 742, 927 |
| MspI | CCGG | 1 cut(s) | 977 |
| MspR9I | CCNGG | 1 cut(s) | 803 |
| Mva1269I | GAATGC | 1 cut(s) | 814 |
| MvaI | CCWGG | 1 cut(s) | 803 |
| MvnI | CGCG | 1 cut(s) | 679 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 366, 685, 1100 |
| NdeI | CATATG | 1 cut(s) | 1081 |
| NdeII | GATC | 6 cut(s) | 8, 52, 254, 1006, 1213, 1417 |
| NlaIII | CATG | 4 cut(s) | 775, 1013, 1294, 1498 |
| NlaIV | GGNNCC | 1 cut(s) | 269 |
| NmuCI | GTSAC | 2 cut(s) | 412, 599 |
| NsiI | ATGCAT | 2 cut(s) | 396, 944 |
| NspI | RCATGY | 1 cut(s) | 1498 |
| PagI | TCATGA | 1 cut(s) | 1009 |
| PciI | ACATGT | 1 cut(s) | 1494 |
| PctI | GAATGC | 1 cut(s) | 814 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1190, 1394 |
| PfeI | GAWTC | 2 cut(s) | 640, 775 |
| PfoI | TCCNGGA | 1 cut(s) | 801 |
| PkrI | GCNGC | 2 cut(s) | 929, 1096 |
| PleI | GAGTC | 1 cut(s) | 409 |
| PmaCI | CACGTG | 1 cut(s) | 378 |
| PmlI | CACGTG | 1 cut(s) | 378 |
| PpsI | GAGTC | 1 cut(s) | 409 |
| Ppu21I | YACGTR | 1 cut(s) | 378 |
| PscI | ACATGT | 1 cut(s) | 1494 |
| PsiI | TTATAA | 2 cut(s) | 120, 830 |
| Psp1406I | AACGTT | 1 cut(s) | 1338 |
| Psp6I | CCWGG | 1 cut(s) | 801 |
| PspCI | CACGTG | 1 cut(s) | 378 |
| PspGI | CCWGG | 1 cut(s) | 801 |
| PspN4I | GGNNCC | 1 cut(s) | 269 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 214, 246 |
| PvuII | CAGCTG | 1 cut(s) | 742 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1289, 1493 |
| SalI | GTCGAC | 1 cut(s) | 1069 |
| SaqAI | TTAA | 5 cut(s) | 546, 627, 665, 1140, 1341 |
| SatI | GCNGC | 2 cut(s) | 928, 1095 |
| Sau3AI | GATC | 6 cut(s) | 8, 52, 254, 1006, 1213, 1417 |
| SchI | GAGTC | 1 cut(s) | 409 |
| ScrFI | CCNGG | 1 cut(s) | 803 |
| SduI | GDGCHC | 1 cut(s) | 771 |
| SfaNI | GCATC | 4 cut(s) | 403, 432, 1283, 1487 |
| SfcI | CTRYAG | 3 cut(s) | 90, 789, 999 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1289, 1493 |
| SmlI | CTYRAG | 1 cut(s) | 180 |
| SmoI | CTYRAG | 1 cut(s) | 180 |
| Sse9I | AATT | 7 cut(s) | 47, 125, 192, 294, 624, 902, 1427 |
| SsiI | CCGC | 1 cut(s) | 925 |
| SspMI | CTAG | 5 cut(s) | 518, 644, 872, 1256, 1460 |
| StyD4I | CCNGG | 1 cut(s) | 801 |
| StyI | CCWWGG | 1 cut(s) | 271 |
| TaaI | ACNGT | 5 cut(s) | 307, 461, 790, 910, 958 |
| TaiI | ACGT | 3 cut(s) | 380, 1070, 1341 |
| TaqI | TCGA | 3 cut(s) | 1070, 1112, 1316 |
| TasI | AATT | 7 cut(s) | 47, 125, 192, 294, 624, 902, 1427 |
| TfiI | GAWTC | 2 cut(s) | 640, 775 |
| Tru1I | TTAA | 5 cut(s) | 546, 627, 665, 1140, 1341 |
| Tru9I | TTAA | 5 cut(s) | 546, 627, 665, 1140, 1341 |
| TscAI | CASTG | 4 cut(s) | 601, 915, 1291, 1495 |
| TseFI | GTSAC | 2 cut(s) | 412, 599 |
| TseI | GCWGC | 2 cut(s) | 927, 1094 |
| Tsp45I | GTSAC | 2 cut(s) | 412, 599 |
| TspDTI | ATGAA | 7 cut(s) | 10, 60, 455, 492, 524, 788, 935 |
| TspGWI | ACGGA | 3 cut(s) | 469, 1194, 1313 |
| TspRI | CASTG | 4 cut(s) | 601, 915, 1291, 1495 |
| XapI | RAATTY | 4 cut(s) | 47, 125, 902, 1427 |
| XceI | RCATGY | 1 cut(s) | 1498 |
| XmiI | GTMKAC | 1 cut(s) | 1070 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1190, 1394 |
| XspI | CTAG | 5 cut(s) | 518, 644, 872, 1256, 1460 |
| Zsp2I | ATGCAT | 2 cut(s) | 396, 944 |