AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 311 |
| AccB1I | GGYRCC | 2 cut(s) | 235, 2703 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3120 |
| AccBSI | CCGCTC | 1 cut(s) | 2896 |
| AccII | CGCG | 2 cut(s) | 925, 2377 |
| AciI | CCGC | 5 cut(s) | 333, 350, 1251, 1623, 2896 |
| AclWI | GGATC | 8 cut(s) | 12, 346, 1133, 1146, 2004, 2017, 2982, 3020 |
| AcoI | YGGCCR | 1 cut(s) | 1071 |
| AcuI | CTGAAG | 2 cut(s) | 1373, 2885 |
| AcyI | GRCGYC | 1 cut(s) | 2704 |
| AdeI | CACNNNGTG | 1 cut(s) | 3120 |
| AfaI | GTAC | 7 cut(s) | 775, 1154, 1376, 1848, 1886, 2387, 3195 |
| AfeI | AGCGCT | 1 cut(s) | 1432 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 356, 710, 818, 1039, 1094, 1786, 1921, 3120, 3144 |
| AflIII | ACRYGT | 4 cut(s) | 634, 884, 2375, 3108 |
| AhlI | ACTAGT | 1 cut(s) | 152 |
| AjnI | CCWGG | 3 cut(s) | 811, 1735, 2838 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1094, 1126, 2538, 2570 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 634, 666, 2718, 2750 |
| Alw21I | GWGCWC | 1 cut(s) | 892 |
| Alw26I | GTCTC | 5 cut(s) | 128, 954, 1654, 2347, 2961 |
| AlwI | GGATC | 8 cut(s) | 12, 346, 1133, 1146, 2004, 2017, 2982, 3020 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2873 |
| Ama87I | CYCGRG | 1 cut(s) | 2816 |
| Aor51HI | AGCGCT | 1 cut(s) | 1432 |
| AoxI | GGCC | 5 cut(s) | 582, 701, 1071, 1419, 2514 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 167 |
| AspLEI | GCGC | 3 cut(s) | 925, 1433, 2706 |
| AspS9I | GGNCC | 4 cut(s) | 582, 702, 806, 1952 |
| AsuC2I | CCSGG | 2 cut(s) | 2993, 3139 |
| AsuHPI | GGTGA | 6 cut(s) | 130, 160, 770, 2160, 2291, 2602 |
| AvaI | CYCGRG | 1 cut(s) | 2816 |
| AvaII | GGWCC | 2 cut(s) | 806, 1952 |
| BamHI | GGATCC | 2 cut(s) | 1138, 2009 |
| BanI | GGYRCC | 2 cut(s) | 235, 2703 |
| BanII | GRGCYC | 1 cut(s) | 716 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 3177 |
| BbsI | GAAGAC | 3 cut(s) | 58, 1733, 1846 |
| Bbv12I | GWGCWC | 1 cut(s) | 892 |
| BbvCI | CCTCAGC | 1 cut(s) | 2082 |
| BccI | CCATC | 5 cut(s) | 693, 1092, 1193, 1906, 1943 |
| BceAI | ACGGC | 1 cut(s) | 2281 |
| BciT130I | CCWGG | 3 cut(s) | 813, 1737, 2840 |
| BcnI | CCSGG | 2 cut(s) | 2993, 3139 |
| BcoDI | GTCTC | 5 cut(s) | 128, 954, 1654, 2347, 2961 |
| BcuI | ACTAGT | 1 cut(s) | 152 |
| BfaI | CTAG | 3 cut(s) | 153, 1667, 1676 |
| BfmI | CTRYAG | 3 cut(s) | 741, 1466, 2805 |
| BfoI | RGCGCY | 2 cut(s) | 1434, 2707 |
| BglII | AGATCT | 1 cut(s) | 361 |
| BlpI | GCTNAGC | 1 cut(s) | 1695 |
| BmcAI | AGTACT | 1 cut(s) | 1154 |
| Bme1390I | CCNGG | 5 cut(s) | 813, 1737, 2840, 2993, 3139 |
| Bme18I | GGWCC | 2 cut(s) | 806, 1952 |
| BmeT110I | CYCGRG | 1 cut(s) | 2816 |
| BmgT120I | GGNCC | 4 cut(s) | 582, 702, 806, 1952 |
| BmiI | GGNNCC | 6 cut(s) | 237, 583, 807, 1140, 2011, 2705 |
| BmrFI | CCNGG | 5 cut(s) | 813, 1737, 2840, 2993, 3139 |
| BmsI | GCATC | 5 cut(s) | 1178, 1634, 1903, 2358, 2449 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2658 |
| BpiI | GAAGAC | 3 cut(s) | 58, 1733, 1846 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2810, 2842 |
| BpmI | CTGGAG | 2 cut(s) | 378, 1427 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2082, 2511 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1695 |
| BpuEI | CTTGAG | 3 cut(s) | 196, 1154, 2166 |
| BpuMI | CCSGG | 2 cut(s) | 2993, 3139 |
| Bsa29I | ATCGAT | 1 cut(s) | 57 |
| BsaBI | GATNNNNATC | 2 cut(s) | 426, 2297 |
| BsaHI | GRCGYC | 1 cut(s) | 2704 |
| BsaI | GGTCTC | 1 cut(s) | 1654 |
| BsaJI | CCNNGG | 5 cut(s) | 288, 812, 1088, 2631, 2991 |
| BsaWI | WCCGGW | 1 cut(s) | 1938 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 351, 381, 874, 904, 2718, 2748, 2958, 2988 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 356, 710, 818, 1039, 1094, 1786, 1921, 3120, 3144 |
| Bse118I | RCCGGY | 1 cut(s) | 41 |
| Bse1I | ACTGG | 5 cut(s) | 823, 1099, 1410, 1882, 2867 |
| Bse3DI | GCAATG | 2 cut(s) | 432, 2517 |
| Bse8I | GATNNNNATC | 2 cut(s) | 426, 2297 |
| BseBI | CCWGG | 3 cut(s) | 813, 1737, 2840 |
| BseCI | ATCGAT | 1 cut(s) | 57 |
| BseDI | CCNNGG | 5 cut(s) | 288, 812, 1088, 2631, 2991 |
| BseGI | GGATG | 8 cut(s) | 91, 1103, 1204, 1297, 1477, 1894, 2863, 3196 |
| BseJI | GATNNNNATC | 2 cut(s) | 426, 2297 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 356, 710, 818, 1039, 1094, 1786, 1921, 3120, 3144 |
| BseMI | GCAATG | 2 cut(s) | 432, 2517 |
| BseNI | ACTGG | 5 cut(s) | 823, 1099, 1410, 1882, 2867 |
| BseRI | GAGGAG | 4 cut(s) | 1325, 2834, 2906, 3160 |
| BsgI | GTGCAG | 1 cut(s) | 892 |
| Bsh1236I | CGCG | 2 cut(s) | 925, 2377 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2056 |
| BshFI | GGCC | 5 cut(s) | 584, 703, 1073, 1421, 2516 |
| BshNI | GGYRCC | 2 cut(s) | 235, 2703 |
| BshVI | ATCGAT | 1 cut(s) | 57 |
| BsiEI | CGRYCG | 1 cut(s) | 2056 |
| BsiHKAI | GWGCWC | 1 cut(s) | 892 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2816 |
| BsiSI | CCGG | 4 cut(s) | 42, 1939, 2993, 3138 |
| BslFI | GGGAC | 2 cut(s) | 829, 1869 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 356, 710, 818, 1039, 1094, 1786, 1921, 3120, 3144 |
| BsmAI | GTCTC | 5 cut(s) | 128, 954, 1654, 2347, 2961 |
| BsmBI | CGTCTC | 1 cut(s) | 2347 |
| BsmFI | GGGAC | 2 cut(s) | 829, 1869 |
| BsmI | GAATGC | 1 cut(s) | 1896 |
| BsnI | GGCC | 5 cut(s) | 584, 703, 1073, 1421, 2516 |
| Bso31I | GGTCTC | 1 cut(s) | 1654 |
| BsoBI | CYCGRG | 1 cut(s) | 2816 |
| Bsp1286I | GDGCHC | 2 cut(s) | 716, 892 |
| Bsp1407I | TGTACA | 3 cut(s) | 1374, 1846, 3193 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1695 |
| Bsp19I | CCATGG | 1 cut(s) | 2631 |
| BspACI | CCGC | 5 cut(s) | 333, 350, 1251, 1623, 2896 |
| BspANI | GGCC | 5 cut(s) | 584, 703, 1073, 1421, 2516 |
| BspDI | ATCGAT | 1 cut(s) | 57 |
| BspFNI | CGCG | 2 cut(s) | 925, 2377 |
| BspHI | TCATGA | 1 cut(s) | 2491 |
| BspLI | GGNNCC | 6 cut(s) | 237, 583, 807, 1140, 2011, 2705 |
| BspMAI | CTGCAG | 2 cut(s) | 745, 1470 |
| BspPI | GGATC | 8 cut(s) | 12, 346, 1133, 1146, 2004, 2017, 2982, 3020 |
| BspT107I | GGYRCC | 2 cut(s) | 235, 2703 |
| BspTNI | GGTCTC | 1 cut(s) | 1654 |
| BsrBI | CCGCTC | 1 cut(s) | 2896 |
| BsrDI | GCAATG | 2 cut(s) | 432, 2517 |
| BsrFI | RCCGGY | 1 cut(s) | 41 |
| BsrGI | TGTACA | 3 cut(s) | 1374, 1846, 3193 |
| BsrI | ACTGG | 5 cut(s) | 823, 1099, 1410, 1882, 2867 |
| BssAI | RCCGGY | 1 cut(s) | 41 |
| BssECI | CCNNGG | 5 cut(s) | 288, 812, 1088, 2631, 2991 |
| BssNI | GRCGYC | 1 cut(s) | 2704 |
| BssT1I | CCWWGG | 3 cut(s) | 288, 1088, 2631 |
| Bst2UI | CCWGG | 3 cut(s) | 813, 1737, 2840 |
| Bst6I | CTCTTC | 1 cut(s) | 1229 |
| BstACI | GRCGYC | 1 cut(s) | 2704 |
| BstAUI | TGTACA | 3 cut(s) | 1374, 1846, 3193 |
| BstC8I | GCNNGC | 4 cut(s) | 354, 2060, 2379, 2948 |
| BstDSI | CCRYGG | 1 cut(s) | 2631 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1037 |
| BstF5I | GGATG | 8 cut(s) | 91, 1103, 1204, 1297, 1477, 1894, 2863, 3196 |
| BstFNI | CGCG | 2 cut(s) | 925, 2377 |
| BstH2I | RGCGCY | 2 cut(s) | 1434, 2707 |
| BstHHI | GCGC | 3 cut(s) | 925, 1433, 2706 |
| BstMAI | GTCTC | 5 cut(s) | 128, 954, 1654, 2347, 2961 |
| BstMCI | CGRYCG | 1 cut(s) | 2056 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 616, 1209, 2087, 2522, 2712, 3161 |
| BstNI | CCWGG | 3 cut(s) | 813, 1737, 2840 |
| BstNSI | RCATGY | 4 cut(s) | 200, 638, 888, 3112 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2658 |
| BstSCI | CCNGG | 5 cut(s) | 811, 1735, 2838, 2991, 3137 |
| BstSFI | CTRYAG | 3 cut(s) | 741, 1466, 2805 |
| BstUI | CGCG | 2 cut(s) | 925, 2377 |
| BstV2I | GAAGAC | 3 cut(s) | 58, 1733, 1846 |
| BstX2I | RGATCY | 4 cut(s) | 361, 1138, 2009, 2987 |
| BstYI | RGATCY | 4 cut(s) | 361, 1138, 2009, 2987 |
| Bsu15I | ATCGAT | 1 cut(s) | 57 |
| BsuRI | GGCC | 5 cut(s) | 584, 703, 1073, 1421, 2516 |
| BsuTUI | ATCGAT | 1 cut(s) | 57 |
| BtgI | CCRYGG | 1 cut(s) | 2631 |
| BtgZI | GCGATG | 1 cut(s) | 1206 |
| BtsCI | GGATG | 8 cut(s) | 91, 1103, 1204, 1297, 1477, 1894, 2863, 3196 |
| BtsIMutI | CAGTG | 6 cut(s) | 1403, 1526, 2224, 2232, 2304, 2649 |
| Cac8I | GCNNGC | 4 cut(s) | 354, 2060, 2379, 2948 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2873 |
| CciI | TCATGA | 1 cut(s) | 2491 |
| CfoI | GCGC | 3 cut(s) | 925, 1433, 2706 |
| Cfr10I | RCCGGY | 1 cut(s) | 41 |
| Cfr13I | GGNCC | 4 cut(s) | 582, 702, 806, 1952 |
| ClaI | ATCGAT | 1 cut(s) | 57 |
| CsiI | ACCWGGT | 1 cut(s) | 1735 |
| Csp6I | GTAC | 7 cut(s) | 774, 1153, 1375, 1847, 1885, 2386, 3194 |
| CviQI | GTAC | 7 cut(s) | 774, 1153, 1375, 1847, 1885, 2386, 3194 |
| DinI | GGCGCC | 1 cut(s) | 2705 |
| DraI | TTTAAA | 1 cut(s) | 666 |
| DraIII | CACNNNGTG | 1 cut(s) | 3120 |
| EaeI | YGGCCR | 1 cut(s) | 1071 |
| Eam1104I | CTCTTC | 1 cut(s) | 1229 |
| EarI | CTCTTC | 1 cut(s) | 1229 |
| Eco130I | CCWWGG | 3 cut(s) | 288, 1088, 2631 |
| Eco24I | GRGCYC | 1 cut(s) | 716 |
| Eco31I | GGTCTC | 1 cut(s) | 1654 |
| Eco32I | GATATC | 2 cut(s) | 382, 1944 |
| Eco47I | GGWCC | 2 cut(s) | 806, 1952 |
| Eco47III | AGCGCT | 1 cut(s) | 1432 |
| Eco57I | CTGAAG | 2 cut(s) | 1373, 2885 |
| Eco88I | CYCGRG | 1 cut(s) | 2816 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1037 |
| EcoO109I | RGGNCCY | 1 cut(s) | 806 |
| EcoRI | GAATTC | 3 cut(s) | 643, 2048, 2626 |
| EcoRII | CCWGG | 3 cut(s) | 811, 1735, 2838 |
| EcoRV | GATATC | 2 cut(s) | 382, 1944 |
| EcoT14I | CCWWGG | 3 cut(s) | 288, 1088, 2631 |
| EcoT22I | ATGCAT | 1 cut(s) | 1896 |
| EcoT38I | GRGCYC | 1 cut(s) | 716 |
| EgeI | GGCGCC | 1 cut(s) | 2705 |
| EheI | GGCGCC | 1 cut(s) | 2705 |
| ErhI | CCWWGG | 3 cut(s) | 288, 1088, 2631 |
| Esp3I | CGTCTC | 1 cut(s) | 2347 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2995, 3027 |
| FaqI | GGGAC | 2 cut(s) | 829, 1869 |
| FauNDI | CATATG | 1 cut(s) | 343 |
| FokI | GGATG | 8 cut(s) | 98, 1110, 1211, 1304, 1484, 1881, 2870, 3183 |
| FriOI | GRGCYC | 1 cut(s) | 716 |
| FspBI | CTAG | 3 cut(s) | 153, 1667, 1676 |
| GlaI | GCGC | 3 cut(s) | 924, 1432, 2705 |
| GsuI | CTGGAG | 2 cut(s) | 378, 1427 |
| HaeII | RGCGCY | 2 cut(s) | 1434, 2707 |
| HaeIII | GGCC | 5 cut(s) | 584, 703, 1073, 1421, 2516 |
| HapII | CCGG | 4 cut(s) | 42, 1939, 2993, 3138 |
| HhaI | GCGC | 3 cut(s) | 925, 1433, 2706 |
| Hin1I | GRCGYC | 1 cut(s) | 2704 |
| Hin6I | GCGC | 3 cut(s) | 923, 1431, 2704 |
| HinP1I | GCGC | 3 cut(s) | 923, 1431, 2704 |
| HincII | GTYRAC | 1 cut(s) | 2263 |
| HindII | GTYRAC | 1 cut(s) | 2263 |
| HindIII | AAGCTT | 2 cut(s) | 49, 1458 |
| HpaII | CCGG | 4 cut(s) | 42, 1939, 2993, 3138 |
| HphI | GGTGA | 6 cut(s) | 130, 160, 770, 2160, 2291, 2602 |
| Hpy166II | GTNNAC | 3 cut(s) | 1377, 2263, 3114 |
| Hpy8I | GTNNAC | 3 cut(s) | 1377, 2263, 3114 |
| Hpy99I | CGWCG | 2 cut(s) | 148, 404 |
| HpyCH4IV | ACGT | 2 cut(s) | 2364, 2835 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 616, 1209, 2087, 2522, 2712, 3161 |
| HpySE526I | ACGT | 2 cut(s) | 2364, 2835 |
| Hsp92I | GRCGYC | 1 cut(s) | 2704 |
| HspAI | GCGC | 3 cut(s) | 923, 1431, 2704 |
| KasI | GGCGCC | 1 cut(s) | 2703 |
| LmnI | GCTCC | 5 cut(s) | 895, 1003, 2536, 2893, 3147 |
| LweI | GCATC | 5 cut(s) | 1178, 1634, 1903, 2358, 2449 |
| MabI | ACCWGGT | 1 cut(s) | 1735 |
| MaeI | CTAG | 3 cut(s) | 153, 1667, 1676 |
| MaeII | ACGT | 2 cut(s) | 2364, 2835 |
| MaeIII | GTNAC | 8 cut(s) | 148, 155, 228, 843, 1494, 2315, 2429, 3104 |
| MbiI | CCGCTC | 1 cut(s) | 2896 |
| MfeI | CAATTG | 1 cut(s) | 1338 |
| MflI | RGATCY | 4 cut(s) | 361, 1138, 2009, 2987 |
| MhlI | GDGCHC | 2 cut(s) | 716, 892 |
| MluI | ACGCGT | 1 cut(s) | 2375 |
| Mly113I | GGCGCC | 1 cut(s) | 2704 |
| MlyI | GAGTC | 2 cut(s) | 217, 2214 |
| MmeI | TCCRAC | 3 cut(s) | 917, 1092, 2188 |
| Mph1103I | ATGCAT | 1 cut(s) | 1896 |
| MroXI | GAANNNNTTC | 1 cut(s) | 167 |
| MslI | CAYNNNNRTG | 1 cut(s) | 883 |
| MspA1I | CMGCKG | 4 cut(s) | 1699, 2758, 2788, 2927 |
| MspI | CCGG | 4 cut(s) | 42, 1939, 2993, 3138 |
| MspR9I | CCNGG | 5 cut(s) | 813, 1737, 2840, 2993, 3139 |
| MunI | CAATTG | 1 cut(s) | 1338 |
| Mva1269I | GAATGC | 1 cut(s) | 1896 |
| MvaI | CCWGG | 3 cut(s) | 813, 1737, 2840 |
| MvnI | CGCG | 2 cut(s) | 925, 2377 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 616, 1209, 2087, 2522, 2712, 3161 |
| NarI | GGCGCC | 1 cut(s) | 2704 |
| NciI | CCSGG | 2 cut(s) | 2993, 3139 |
| NcoI | CCATGG | 1 cut(s) | 2631 |
| NdeI | CATATG | 1 cut(s) | 343 |
| NlaIV | GGNNCC | 6 cut(s) | 237, 583, 807, 1140, 2011, 2705 |
| NmuCI | GTSAC | 4 cut(s) | 148, 228, 843, 1494 |
| NsiI | ATGCAT | 1 cut(s) | 1896 |
| NspI | RCATGY | 4 cut(s) | 200, 638, 888, 3112 |
| PaeR7I | CTCGAG | 1 cut(s) | 2816 |
| PagI | TCATGA | 1 cut(s) | 2491 |
| PciI | ACATGT | 3 cut(s) | 634, 884, 3108 |
| PctI | GAATGC | 1 cut(s) | 1896 |
| PdmI | GAANNNNTTC | 1 cut(s) | 167 |
| PfeI | GAWTC | 9 cut(s) | 59, 422, 728, 1115, 1712, 2570, 2791, 2999, 3037 |
| PflFI | GACNNNGTC | 1 cut(s) | 226 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3120 |
| Ple19I | CGATCG | 1 cut(s) | 2056 |
| PleI | GAGTC | 2 cut(s) | 217, 2213 |
| PluTI | GGCGCC | 1 cut(s) | 2707 |
| PpsI | GAGTC | 2 cut(s) | 217, 2213 |
| PpuMI | RGGWCCY | 1 cut(s) | 806 |
| PscI | ACATGT | 3 cut(s) | 634, 884, 3108 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2658 |
| PsiI | TTATAA | 1 cut(s) | 311 |
| Psp5II | RGGWCCY | 1 cut(s) | 806 |
| Psp6I | CCWGG | 3 cut(s) | 811, 1735, 2838 |
| PspGI | CCWGG | 3 cut(s) | 811, 1735, 2838 |
| PspN4I | GGNNCC | 6 cut(s) | 237, 583, 807, 1140, 2011, 2705 |
| PspPI | GGNCC | 4 cut(s) | 582, 702, 806, 1952 |
| PspPPI | RGGWCCY | 1 cut(s) | 806 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2816, 2848 |
| PstI | CTGCAG | 2 cut(s) | 745, 1470 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2873 |
| PsuI | RGATCY | 4 cut(s) | 361, 1138, 2009, 2987 |
| PsyI | GACNNNGTC | 1 cut(s) | 226 |
| PvuI | CGATCG | 1 cut(s) | 2056 |
| PvuII | CAGCTG | 4 cut(s) | 1699, 2758, 2788, 2927 |
| RsaI | GTAC | 7 cut(s) | 775, 1154, 1376, 1848, 1886, 2387, 3195 |
| RsaNI | GTAC | 7 cut(s) | 774, 1153, 1375, 1847, 1885, 2386, 3194 |
| RseI | CAYNNNNRTG | 1 cut(s) | 883 |
| Sau96I | GGNCC | 4 cut(s) | 582, 702, 806, 1952 |
| ScaI | AGTACT | 1 cut(s) | 1154 |
| SchI | GAGTC | 2 cut(s) | 217, 2214 |
| ScrFI | CCNGG | 5 cut(s) | 813, 1737, 2840, 2993, 3139 |
| SduI | GDGCHC | 2 cut(s) | 716, 892 |
| SexAI | ACCWGGT | 1 cut(s) | 1735 |
| SfaNI | GCATC | 5 cut(s) | 1178, 1634, 1903, 2358, 2449 |
| SfcI | CTRYAG | 3 cut(s) | 741, 1466, 2805 |
| SfoI | GGCGCC | 1 cut(s) | 2705 |
| Sfr274I | CTCGAG | 1 cut(s) | 2816 |
| SinI | GGWCC | 2 cut(s) | 806, 1952 |
| SlaI | CTCGAG | 1 cut(s) | 2816 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 883 |
| SmlI | CTYRAG | 4 cut(s) | 211, 1133, 2181, 2816 |
| SmoI | CTYRAG | 4 cut(s) | 211, 1133, 2181, 2816 |
| SpeI | ACTAGT | 1 cut(s) | 152 |
| SsiI | CCGC | 5 cut(s) | 333, 350, 1251, 1623, 2896 |
| SspDI | GGCGCC | 1 cut(s) | 2703 |
| SspI | AATATT | 1 cut(s) | 1614 |
| SspMI | CTAG | 3 cut(s) | 153, 1667, 1676 |
| StyD4I | CCNGG | 5 cut(s) | 811, 1735, 2838, 2991, 3137 |
| StyI | CCWWGG | 3 cut(s) | 288, 1088, 2631 |
| TaiI | ACGT | 2 cut(s) | 2367, 2838 |
| TaqI | TCGA | 7 cut(s) | 57, 143, 448, 2052, 2134, 2662, 2817 |
| TaqII | GACCGA | 1 cut(s) | 52 |
| TatI | WGTACW | 6 cut(s) | 773, 1152, 1374, 1846, 1884, 3193 |
| TauI | GCSGC | 3 cut(s) | 335, 352, 2899 |
| TfiI | GAWTC | 9 cut(s) | 59, 422, 728, 1115, 1712, 2570, 2791, 2999, 3037 |
| TscAI | CASTG | 6 cut(s) | 1410, 1533, 2224, 2239, 2311, 2656 |
| TseFI | GTSAC | 4 cut(s) | 148, 228, 843, 1494 |
| Tsp45I | GTSAC | 4 cut(s) | 148, 228, 843, 1494 |
| TspGWI | ACGGA | 2 cut(s) | 2233, 3189 |
| TspRI | CASTG | 6 cut(s) | 1410, 1533, 2224, 2239, 2311, 2656 |
| Tth111I | GACNNNGTC | 1 cut(s) | 226 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3120 |
| VpaK11BI | GGWCC | 2 cut(s) | 806, 1952 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1037 |
| XbaI | TCTAGA | 1 cut(s) | 1666 |
| XceI | RCATGY | 4 cut(s) | 200, 638, 888, 3112 |
| XhoI | CTCGAG | 1 cut(s) | 2816 |
| XmnI | GAANNNNTTC | 1 cut(s) | 167 |
| XspI | CTAG | 3 cut(s) | 153, 1667, 1676 |
| ZrmI | AGTACT | 1 cut(s) | 1154 |
| Zsp2I | ATGCAT | 1 cut(s) | 1896 |