AAA domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AAA_11 | PF13086 | 243 - 443 | 1.5e-14 | AAA domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 704 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 368 |
| AccI | GTMKAC | 1 cut(s) | 1168 |
| AccII | CGCG | 3 cut(s) | 848, 1095, 1152 |
| AciI | CCGC | 2 cut(s) | 1093, 1150 |
| AclWI | GGATC | 4 cut(s) | 428, 441, 495, 610 |
| AcsI | RAATTY | 2 cut(s) | 573, 1013 |
| AcuI | CTGAAG | 2 cut(s) | 202, 614 |
| AfaI | GTAC | 3 cut(s) | 826, 1054, 1247 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 368, 827 |
| AflII | CTTAAG | 1 cut(s) | 767 |
| AflIII | ACRYGT | 1 cut(s) | 1255 |
| AgsI | TTSAA | 3 cut(s) | 278, 1277, 1316 |
| AjnI | CCWGG | 1 cut(s) | 820 |
| AluBI | AGCT | 4 cut(s) | 25, 216, 749, 1273 |
| AluI | AGCT | 4 cut(s) | 25, 216, 749, 1273 |
| Alw21I | GWGCWC | 2 cut(s) | 901, 973 |
| Alw26I | GTCTC | 3 cut(s) | 247, 257, 1232 |
| AlwI | GGATC | 4 cut(s) | 428, 441, 495, 610 |
| Ama87I | CYCGRG | 2 cut(s) | 185, 211 |
| AoxI | GGCC | 1 cut(s) | 413 |
| ApeKI | GCWGC | 2 cut(s) | 599, 749 |
| ApoI | RAATTY | 2 cut(s) | 573, 1013 |
| AseI | ATTAAT | 2 cut(s) | 323, 552 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 253 |
| AspS9I | GGNCC | 1 cut(s) | 815 |
| AsuHPI | GGTGA | 1 cut(s) | 482 |
| AsuII | TTCGAA | 1 cut(s) | 1011 |
| AvaI | CYCGRG | 2 cut(s) | 185, 211 |
| AvaII | GGWCC | 1 cut(s) | 815 |
| BamHI | GGATCC | 1 cut(s) | 433 |
| Bbv12I | GWGCWC | 2 cut(s) | 901, 973 |
| BbvI | GCAGC | 2 cut(s) | 586, 736 |
| BccI | CCATC | 2 cut(s) | 677, 1185 |
| BciT130I | CCWGG | 1 cut(s) | 822 |
| BcoDI | GTCTC | 3 cut(s) | 247, 257, 1232 |
| BfaI | CTAG | 4 cut(s) | 60, 446, 498, 1268 |
| BfmI | CTRYAG | 1 cut(s) | 648 |
| BfrI | CTTAAG | 1 cut(s) | 767 |
| BglII | AGATCT | 2 cut(s) | 100, 221 |
| BisI | GCNGC | 2 cut(s) | 600, 750 |
| BlsI | GCNGC | 2 cut(s) | 601, 751 |
| Bme1390I | CCNGG | 1 cut(s) | 822 |
| Bme18I | GGWCC | 1 cut(s) | 815 |
| BmeT110I | CYCGRG | 2 cut(s) | 185, 211 |
| BmgT120I | GGNCC | 1 cut(s) | 815 |
| BmiI | GGNNCC | 3 cut(s) | 308, 435, 816 |
| BmrFI | CCNGG | 1 cut(s) | 822 |
| BmsI | GCATC | 3 cut(s) | 586, 628, 1317 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 194, 226 |
| Bpu14I | TTCGAA | 1 cut(s) | 1011 |
| BpuEI | CTTGAG | 1 cut(s) | 1247 |
| Bsa29I | ATCGAT | 2 cut(s) | 296, 423 |
| BsaBI | GATNNNNATC | 1 cut(s) | 226 |
| BsaJI | CCNNGG | 1 cut(s) | 108 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 368, 827 |
| Bse8I | GATNNNNATC | 1 cut(s) | 226 |
| BseBI | CCWGG | 1 cut(s) | 822 |
| BseCI | ATCGAT | 2 cut(s) | 296, 423 |
| BseDI | CCNNGG | 1 cut(s) | 108 |
| BseGI | GGATG | 2 cut(s) | 601, 1196 |
| BseJI | GATNNNNATC | 1 cut(s) | 226 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 368, 827 |
| BseMII | CTCAG | 5 cut(s) | 176, 192, 377, 386, 524 |
| BseXI | GCAGC | 2 cut(s) | 586, 736 |
| Bsh1236I | CGCG | 3 cut(s) | 848, 1095, 1152 |
| Bsh1285I | CGRYCG | 1 cut(s) | 846 |
| BshFI | GGCC | 1 cut(s) | 415 |
| BshVI | ATCGAT | 2 cut(s) | 296, 423 |
| BsiEI | CGRYCG | 1 cut(s) | 846 |
| BsiHKAI | GWGCWC | 2 cut(s) | 901, 973 |
| BsiHKCI | CYCGRG | 2 cut(s) | 185, 211 |
| BslFI | GGGAC | 1 cut(s) | 828 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 368, 827 |
| BsmAI | GTCTC | 3 cut(s) | 247, 257, 1232 |
| BsmFI | GGGAC | 1 cut(s) | 828 |
| BsnI | GGCC | 1 cut(s) | 415 |
| BsoBI | CYCGRG | 2 cut(s) | 185, 211 |
| Bsp119I | TTCGAA | 1 cut(s) | 1011 |
| Bsp1286I | GDGCHC | 2 cut(s) | 901, 973 |
| Bsp143I | GATC | 6 cut(s) | 100, 221, 297, 433, 500, 615 |
| Bsp68I | TCGCGA | 1 cut(s) | 848 |
| BspACI | CCGC | 2 cut(s) | 1093, 1150 |
| BspANI | GGCC | 1 cut(s) | 415 |
| BspCNI | CTCAG | 5 cut(s) | 175, 193, 378, 387, 523 |
| BspDI | ATCGAT | 2 cut(s) | 296, 423 |
| BspFNI | CGCG | 3 cut(s) | 848, 1095, 1152 |
| BspLI | GGNNCC | 3 cut(s) | 308, 435, 816 |
| BspPI | GGATC | 4 cut(s) | 428, 441, 495, 610 |
| BspT104I | TTCGAA | 1 cut(s) | 1011 |
| BspTI | CTTAAG | 1 cut(s) | 767 |
| BssECI | CCNNGG | 1 cut(s) | 108 |
| BssMI | GATC | 6 cut(s) | 100, 221, 297, 433, 500, 615 |
| BssT1I | CCWWGG | 1 cut(s) | 108 |
| Bst2UI | CCWGG | 1 cut(s) | 822 |
| Bst4CI | ACNGT | 5 cut(s) | 701, 844, 889, 1064, 1173 |
| Bst6I | CTCTTC | 3 cut(s) | 742, 1193, 1311 |
| BstAFI | CTTAAG | 1 cut(s) | 767 |
| BstBI | TTCGAA | 1 cut(s) | 1011 |
| BstDEI | CTNAG | 7 cut(s) | 162, 201, 386, 395, 510, 951, 1242 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 825 |
| BstF5I | GGATG | 2 cut(s) | 601, 1196 |
| BstFNI | CGCG | 3 cut(s) | 848, 1095, 1152 |
| BstKTI | GATC | 6 cut(s) | 103, 224, 300, 436, 503, 618 |
| BstMAI | GTCTC | 3 cut(s) | 247, 257, 1232 |
| BstMBI | GATC | 6 cut(s) | 100, 221, 297, 433, 500, 615 |
| BstMCI | CGRYCG | 1 cut(s) | 846 |
| BstNI | CCWGG | 1 cut(s) | 822 |
| BstNSI | RCATGY | 1 cut(s) | 1259 |
| BstSCI | CCNGG | 1 cut(s) | 820 |
| BstSFI | CTRYAG | 1 cut(s) | 648 |
| BstUI | CGCG | 3 cut(s) | 848, 1095, 1152 |
| BstV1I | GCAGC | 2 cut(s) | 586, 736 |
| BstX2I | RGATCY | 4 cut(s) | 100, 221, 433, 500 |
| BstYI | RGATCY | 4 cut(s) | 100, 221, 433, 500 |
| Bsu15I | ATCGAT | 2 cut(s) | 296, 423 |
| BsuRI | GGCC | 1 cut(s) | 415 |
| BsuTUI | ATCGAT | 2 cut(s) | 296, 423 |
| BtsCI | GGATG | 2 cut(s) | 601, 1196 |
| BtsIMutI | CAGTG | 2 cut(s) | 170, 383 |
| BtuMI | TCGCGA | 1 cut(s) | 848 |
| Cfr13I | GGNCC | 1 cut(s) | 815 |
| ClaI | ATCGAT | 2 cut(s) | 296, 423 |
| CseI | GACGC | 1 cut(s) | 918 |
| Csp6I | GTAC | 3 cut(s) | 825, 1053, 1246 |
| CviAII | CATG | 2 cut(s) | 311, 1256 |
| CviJI | RGCY | 8 cut(s) | 25, 216, 361, 415, 647, 749, 986, 1273 |
| CviKI_1 | RGCY | 8 cut(s) | 25, 216, 361, 415, 647, 749, 986, 1273 |
| CviQI | GTAC | 3 cut(s) | 825, 1053, 1246 |
| DdeI | CTNAG | 7 cut(s) | 162, 201, 386, 395, 510, 951, 1242 |
| DpnI | GATC | 6 cut(s) | 102, 223, 299, 435, 502, 617 |
| DpnII | GATC | 6 cut(s) | 100, 221, 297, 433, 500, 615 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 704 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 704 |
| Eam1104I | CTCTTC | 3 cut(s) | 742, 1193, 1311 |
| EarI | CTCTTC | 3 cut(s) | 742, 1193, 1311 |
| Eco130I | CCWWGG | 1 cut(s) | 108 |
| Eco32I | GATATC | 1 cut(s) | 88 |
| Eco47I | GGWCC | 1 cut(s) | 815 |
| Eco57I | CTGAAG | 2 cut(s) | 202, 614 |
| Eco88I | CYCGRG | 2 cut(s) | 185, 211 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 825 |
| EcoO109I | RGGNCCY | 1 cut(s) | 815 |
| EcoRI | GAATTC | 1 cut(s) | 1013 |
| EcoRII | CCWGG | 1 cut(s) | 820 |
| EcoRV | GATATC | 1 cut(s) | 88 |
| EcoT14I | CCWWGG | 1 cut(s) | 108 |
| ErhI | CCWWGG | 1 cut(s) | 108 |
| FaeI | CATG | 2 cut(s) | 314, 1259 |
| FaqI | GGGAC | 1 cut(s) | 828 |
| FatI | CATG | 2 cut(s) | 310, 1255 |
| FblI | GTMKAC | 1 cut(s) | 1168 |
| Fnu4HI | GCNGC | 2 cut(s) | 600, 750 |
| FokI | GGATG | 2 cut(s) | 608, 1203 |
| Fsp4HI | GCNGC | 2 cut(s) | 600, 750 |
| FspBI | CTAG | 4 cut(s) | 60, 446, 498, 1268 |
| GluI | GCNGC | 2 cut(s) | 600, 750 |
| HaeIII | GGCC | 1 cut(s) | 415 |
| HgaI | GACGC | 1 cut(s) | 918 |
| Hin1II | CATG | 2 cut(s) | 314, 1259 |
| HinfI | GANTC | 6 cut(s) | 388, 420, 473, 605, 692, 1208 |
| HphI | GGTGA | 1 cut(s) | 482 |
| Hpy166II | GTNNAC | 5 cut(s) | 490, 785, 1160, 1169, 1342 |
| Hpy188I | TCNGA | 6 cut(s) | 221, 396, 513, 615, 691, 697 |
| Hpy188III | TCNNGA | 8 cut(s) | 211, 246, 498, 619, 632, 847, 1086, 1226 |
| Hpy8I | GTNNAC | 5 cut(s) | 490, 785, 1160, 1169, 1342 |
| HpyAV | CCTTC | 3 cut(s) | 282, 638, 1297 |
| HpyCH4III | ACNGT | 5 cut(s) | 701, 844, 889, 1064, 1173 |
| HpyCH4IV | ACGT | 3 cut(s) | 453, 718, 1051 |
| HpyCH4V | TGCA | 6 cut(s) | 335, 383, 534, 871, 882, 1330 |
| HpyF3I | CTNAG | 7 cut(s) | 162, 201, 386, 395, 510, 951, 1242 |
| HpySE526I | ACGT | 3 cut(s) | 453, 718, 1051 |
| Hsp92II | CATG | 2 cut(s) | 314, 1259 |
| Kzo9I | GATC | 6 cut(s) | 100, 221, 297, 433, 500, 615 |
| LmnI | GCTCC | 2 cut(s) | 904, 976 |
| LpnPI | CCDG | 9 cut(s) | 144, 252, 522, 617, 632, 807, 813, 834, 1071 |
| Lsp1109I | GCAGC | 2 cut(s) | 586, 736 |
| LweI | GCATC | 3 cut(s) | 586, 628, 1317 |
| MaeI | CTAG | 4 cut(s) | 60, 446, 498, 1268 |
| MaeII | ACGT | 3 cut(s) | 453, 718, 1051 |
| MaeIII | GTNAC | 2 cut(s) | 75, 449 |
| MalI | GATC | 6 cut(s) | 102, 223, 299, 435, 502, 617 |
| MboI | GATC | 6 cut(s) | 100, 221, 297, 433, 500, 615 |
| MfeI | CAATTG | 1 cut(s) | 960 |
| MflI | RGATCY | 4 cut(s) | 100, 221, 433, 500 |
| MhlI | GDGCHC | 2 cut(s) | 901, 973 |
| MluCI | AATT | 6 cut(s) | 320, 573, 778, 960, 1013, 1107 |
| MlyI | GAGTC | 2 cut(s) | 397, 1217 |
| MmeI | TCCRAC | 1 cut(s) | 998 |
| MnlI | CCTC | 7 cut(s) | 101, 181, 186, 402, 828, 1194, 1314 |
| MroXI | GAANNNNTTC | 1 cut(s) | 253 |
| MseI | TTAA | 5 cut(s) | 318, 323, 552, 768, 1143 |
| MslI | CAYNNNNRTG | 2 cut(s) | 594, 1260 |
| MspCI | CTTAAG | 1 cut(s) | 767 |
| MspR9I | CCNGG | 1 cut(s) | 822 |
| MunI | CAATTG | 1 cut(s) | 960 |
| MvaI | CCWGG | 1 cut(s) | 822 |
| MvnI | CGCG | 3 cut(s) | 848, 1095, 1152 |
| NdeII | GATC | 6 cut(s) | 100, 221, 297, 433, 500, 615 |
| NlaIII | CATG | 2 cut(s) | 314, 1259 |
| NlaIV | GGNNCC | 3 cut(s) | 308, 435, 816 |
| NmeAIII | GCCGAG | 1 cut(s) | 962 |
| NmuCI | GTSAC | 1 cut(s) | 75 |
| NruI | TCGCGA | 1 cut(s) | 848 |
| NspI | RCATGY | 1 cut(s) | 1259 |
| NspV | TTCGAA | 1 cut(s) | 1011 |
| PaeR7I | CTCGAG | 2 cut(s) | 185, 211 |
| PciI | ACATGT | 1 cut(s) | 1255 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 345 |
| PdmI | GAANNNNTTC | 1 cut(s) | 253 |
| PfeI | GAWTC | 4 cut(s) | 420, 473, 605, 692 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 368 |
| PkrI | GCNGC | 2 cut(s) | 601, 751 |
| PleI | GAGTC | 2 cut(s) | 396, 1216 |
| PpsI | GAGTC | 2 cut(s) | 396, 1216 |
| PpuMI | RGGWCCY | 1 cut(s) | 815 |
| PscI | ACATGT | 1 cut(s) | 1255 |
| PshBI | ATTAAT | 2 cut(s) | 323, 552 |
| Psp5II | RGGWCCY | 1 cut(s) | 815 |
| Psp6I | CCWGG | 1 cut(s) | 820 |
| PspGI | CCWGG | 1 cut(s) | 820 |
| PspN4I | GGNNCC | 3 cut(s) | 308, 435, 816 |
| PspPI | GGNCC | 1 cut(s) | 815 |
| PspPPI | RGGWCCY | 1 cut(s) | 815 |
| PspXI | VCTCGAGB | 1 cut(s) | 185 |
| PsuI | RGATCY | 4 cut(s) | 100, 221, 433, 500 |
| RruI | TCGCGA | 1 cut(s) | 848 |
| RsaI | GTAC | 3 cut(s) | 826, 1054, 1247 |
| RsaNI | GTAC | 3 cut(s) | 825, 1053, 1246 |
| RseI | CAYNNNNRTG | 2 cut(s) | 594, 1260 |
| SaqAI | TTAA | 5 cut(s) | 318, 323, 552, 768, 1143 |
| SatI | GCNGC | 2 cut(s) | 600, 750 |
| Sau3AI | GATC | 6 cut(s) | 100, 221, 297, 433, 500, 615 |
| Sau96I | GGNCC | 1 cut(s) | 815 |
| SchI | GAGTC | 2 cut(s) | 397, 1217 |
| ScrFI | CCNGG | 1 cut(s) | 822 |
| SduI | GDGCHC | 2 cut(s) | 901, 973 |
| SfaNI | GCATC | 3 cut(s) | 586, 628, 1317 |
| SfcI | CTRYAG | 1 cut(s) | 648 |
| Sfr274I | CTCGAG | 2 cut(s) | 185, 211 |
| SfuI | TTCGAA | 1 cut(s) | 1011 |
| SinI | GGWCC | 1 cut(s) | 815 |
| SlaI | CTCGAG | 2 cut(s) | 185, 211 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 594, 1260 |
| SmlI | CTYRAG | 4 cut(s) | 185, 211, 767, 1226 |
| SmoI | CTYRAG | 4 cut(s) | 185, 211, 767, 1226 |
| Sse9I | AATT | 6 cut(s) | 320, 573, 778, 960, 1013, 1107 |
| SsiI | CCGC | 2 cut(s) | 1093, 1150 |
| SspMI | CTAG | 4 cut(s) | 60, 446, 498, 1268 |
| StyD4I | CCNGG | 1 cut(s) | 820 |
| StyI | CCWWGG | 1 cut(s) | 108 |
| TaaI | ACNGT | 5 cut(s) | 701, 844, 889, 1064, 1173 |
| TaiI | ACGT | 3 cut(s) | 456, 721, 1054 |
| TaqI | TCGA | 8 cut(s) | 186, 212, 230, 296, 423, 571, 708, 1011 |
| TasI | AATT | 6 cut(s) | 320, 573, 778, 960, 1013, 1107 |
| TfiI | GAWTC | 4 cut(s) | 420, 473, 605, 692 |
| Tru1I | TTAA | 5 cut(s) | 318, 323, 552, 768, 1143 |
| Tru9I | TTAA | 5 cut(s) | 318, 323, 552, 768, 1143 |
| TscAI | CASTG | 2 cut(s) | 170, 390 |
| TseFI | GTSAC | 1 cut(s) | 75 |
| TseI | GCWGC | 2 cut(s) | 599, 749 |
| Tsp45I | GTSAC | 1 cut(s) | 75 |
| TspDTI | ATGAA | 3 cut(s) | 168, 1278, 1308 |
| TspGWI | ACGGA | 1 cut(s) | 136 |
| TspRI | CASTG | 2 cut(s) | 170, 390 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 368 |
| Vha464I | CTTAAG | 1 cut(s) | 767 |
| VpaK11BI | GGWCC | 1 cut(s) | 815 |
| VspI | ATTAAT | 2 cut(s) | 323, 552 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 825 |
| XapI | RAATTY | 2 cut(s) | 573, 1013 |
| XbaI | TCTAGA | 1 cut(s) | 497 |
| XceI | RCATGY | 1 cut(s) | 1259 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1063 |
| XhoI | CTCGAG | 2 cut(s) | 185, 211 |
| XmiI | GTMKAC | 1 cut(s) | 1168 |
| XmnI | GAANNNNTTC | 1 cut(s) | 253 |
| XspI | CTAG | 4 cut(s) | 60, 446, 498, 1268 |