RchiOBHm_Chr3g0488211

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000279
Physical Location & Seq
Forward (+)
35847828 .. 35848887
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45259

Sequence Viewer

Length: 954 bp
ATGTATGAGCCACAGGTTGGAGATATCATTGCCTTGACTAATGTTAGACCAAAATGCATTGATGATTTGAACAGGCCTCCAAGGTTCTATCTAATTGCTTATGTTGATAAAGCAAATGATATTGAAGAATTTCCTGATGATCTCCAGTTCAAAATACTATCATCGAAGCCTATCAACTATGGAGAACCAGACATGCATAAGAGCAAGAGAGAGACACTTTTTGCTGTCTATCTTATGAACTTGACAACAAATCTCCGTGTATGGAAGGCTTTGAAATCAGAGGGAAATACAAATATCATTAACAAAGTTCTGCAACCCAAGTCATATGATGGGGATTCTTGTTCAGTTTGCTTCTCCAAAGAAAAATGCAATGCTGGCATTTCTGCTATATGGCCTACAATTTGCTCTCAAAATCTAAATGAATCCCAAGAAGCTGCAGTTTTGAACTGTATCAGTTTGACTCAATGCCATCACCAGAATTCCGTAAAATTAATATGGGGTCCTCCTGGTACTGGCAAGACGAAGACAATGAGTCTGACACTCTTTGCTCTCTTTCAGTTAAAGTGCAGAACTCTCACATGTGCTCCCACCAATATTGCGGTGCTAGAAGTAGCAGCAAGACTCCGGAGATTGGTTAACCAGTCACTCGAGTATGGCAGGTATGGACTAGGAGATATAGTTCTCTTTGGTAACAAGAAGCAAATGAAGATTGACAATAATGATGATCTTCGTGATATATTTCTTGATCATCGTGTTAAAATTCTCATCAAGTGTTTGGTCCCTTTATCTGGGTGGAAACATTTGTTAGAATCAATGATACATTTACTTGATGATCCTGAGGAACAATATTCTTTGTATTTGGAAAAGAGAGCTGAAAAGCAGAAACAGAATGCACAAAAAAATGAGGAGGATAATCGAAAACATAATGGAGATGAGGATTATCCTTTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

317

Amino Acids

36.24

Weight (kDa)

7.52

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 2 - 96 6e-13 Domain of unknown function (DUF6469)
AAA_11 PF13086 138 - 305 2.5e-15 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 648
AccB7I CCANNNNNTGG 1 cut(s) 17
AccIII TCCGGA 1 cut(s) 624
AciI CCGC 1 cut(s) 599
AclWI GGATC 1 cut(s) 827
AcsI RAATTY 3 cut(s) 128, 478, 759
AfaI GTAC 1 cut(s) 511
AfiI CCNNNNNNNGG 4 cut(s) 17, 512, 631, 788
AflIII ACRYGT 1 cut(s) 578
AgsI TTSAA 5 cut(s) 70, 125, 151, 274, 445
AhdI GACNNNNNGTC 1 cut(s) 531
AjnI CCWGG 1 cut(s) 505
AloI GAACNNNNNNTCC 2 cut(s) 663, 695
AluBI AGCT 2 cut(s) 434, 872
AluI AGCT 2 cut(s) 434, 872
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 1 cut(s) 827
Ama87I CYCGRG 1 cut(s) 647
Aor13HI TCCGGA 1 cut(s) 624
AoxI GGCC 2 cut(s) 74, 392
ApeKI GCWGC 2 cut(s) 434, 614
ApoI RAATTY 3 cut(s) 128, 478, 759
AseI ATTAAT 1 cut(s) 491
Asp700I GAANNNNTTC 1 cut(s) 129
AspS9I GGNCC 2 cut(s) 500, 778
AsuHPI GGTGA 1 cut(s) 464
AvaI CYCGRG 1 cut(s) 647
AvaII GGWCC 2 cut(s) 500, 778
AxyI CCTNAGG 1 cut(s) 837
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 2 cut(s) 421, 626
BccI CCATC 2 cut(s) 323, 477
BciT130I CCWGG 1 cut(s) 507
BclI TGATCA 1 cut(s) 745
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 2 cut(s) 605, 668
BfmI CTRYAG 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 648
BisI GCNGC 2 cut(s) 435, 615
BlsI GCNGC 2 cut(s) 436, 616
Bme1390I CCNGG 1 cut(s) 507
Bme18I GGWCC 2 cut(s) 500, 778
BmeRI GACNNNNNGTC 1 cut(s) 531
BmeT110I CYCGRG 1 cut(s) 647
BmgT120I GGNCC 2 cut(s) 500, 778
BmiI GGNNCC 2 cut(s) 501, 780
BmrFI CCNGG 1 cut(s) 507
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 624
BsaXI ACNNNNNCTCC 4 cut(s) 568, 598, 663, 693
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 512, 631, 788
Bse1I ACTGG 3 cut(s) 145, 517, 640
Bse21I CCTNAGG 1 cut(s) 837
Bse3DI GCAATG 2 cut(s) 27, 376
BseAI TCCGGA 1 cut(s) 624
BseBI CCWGG 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 80
BseLI CCNNNNNNNGG 4 cut(s) 17, 512, 631, 788
BseMI GCAATG 2 cut(s) 27, 376
BseMII CTCAG 1 cut(s) 828
BseNI ACTGG 3 cut(s) 145, 517, 640
BseRI GAGGAG 1 cut(s) 920
BseXI GCAGC 2 cut(s) 421, 626
BsgI GTGCAG 1 cut(s) 586
BshFI GGCC 2 cut(s) 76, 394
BsiHKAI GWGCWC 1 cut(s) 586
BsiHKCI CYCGRG 1 cut(s) 647
BsiSI CCGG 1 cut(s) 625
BslFI GGGAC 1 cut(s) 764
BslI CCNNNNNNNGG 4 cut(s) 17, 512, 631, 788
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 764
BsmI GAATGC 1 cut(s) 895
BsnI GGCC 2 cut(s) 76, 394
BsoBI CYCGRG 1 cut(s) 647
Bsp1286I GDGCHC 1 cut(s) 586
Bsp13I TCCGGA 1 cut(s) 624
Bsp143I GATC 4 cut(s) 139, 724, 745, 832
BspACI CCGC 1 cut(s) 599
BspANI GGCC 2 cut(s) 76, 394
BspCNI CTCAG 1 cut(s) 829
BspEI TCCGGA 1 cut(s) 624
BspLI GGNNCC 2 cut(s) 501, 780
BspMAI CTGCAG 1 cut(s) 439
BspMI ACCTGC 1 cut(s) 648
BspPI GGATC 1 cut(s) 827
BsrDI GCAATG 2 cut(s) 27, 376
BsrI ACTGG 3 cut(s) 145, 517, 640
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 4 cut(s) 139, 724, 745, 832
BssT1I CCWWGG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 1 cut(s) 449
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 1 cut(s) 837
BstKTI GATC 4 cut(s) 142, 727, 748, 835
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 4 cut(s) 139, 724, 745, 832
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNI CCWGG 1 cut(s) 507
BstNSI RCATGY 2 cut(s) 196, 582
BstSCI CCNGG 1 cut(s) 505
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 2 cut(s) 421, 626
BstV2I GAAGAC 1 cut(s) 530
Bsu36I CCTNAGG 1 cut(s) 837
BsuRI GGCC 2 cut(s) 76, 394
BveI ACCTGC 1 cut(s) 648
Cac8I GCNNGC 1 cut(s) 376
Cfr13I GGNCC 2 cut(s) 500, 778
Csp6I GTAC 1 cut(s) 510
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
CviAII CATG 2 cut(s) 193, 579
CviJI RGCY 7 cut(s) 10, 76, 169, 269, 394, 434, 872
CviKI_1 RGCY 7 cut(s) 10, 76, 169, 269, 394, 434, 872
CviQI GTAC 1 cut(s) 510
DdeI CTNAG 1 cut(s) 837
DpnI GATC 4 cut(s) 141, 726, 747, 834
DpnII GATC 4 cut(s) 139, 724, 745, 832
DriI GACNNNNNGTC 1 cut(s) 531
Eam1105I GACNNNNNGTC 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 80
Eco147I AGGCCT 1 cut(s) 76
Eco32I GATATC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 500, 778
Eco81I CCTNAGG 1 cut(s) 837
Eco88I CYCGRG 1 cut(s) 647
EcoO109I RGGNCCY 1 cut(s) 500
EcoRI GAATTC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 505
EcoRV GATATC 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 80
EcoT22I ATGCAT 2 cut(s) 59, 198
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 2 cut(s) 196, 582
FaqI GGGAC 1 cut(s) 764
FatI CATG 2 cut(s) 192, 578
FauNDI CATATG 1 cut(s) 325
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 2 cut(s) 435, 615
Fsp4HI GCNGC 2 cut(s) 435, 615
FspBI CTAG 2 cut(s) 605, 668
GluI GCNGC 2 cut(s) 435, 615
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 2 cut(s) 76, 394
HapII CCGG 1 cut(s) 625
Hin1II CATG 2 cut(s) 196, 582
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HinfI GANTC 6 cut(s) 335, 422, 460, 532, 621, 809
HpaI GTTAAC 1 cut(s) 637
HpaII CCGG 1 cut(s) 625
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 1 cut(s) 637
Hpy188I TCNGA 2 cut(s) 280, 537
Hpy188III TCNNGA 5 cut(s) 134, 625, 731, 743, 836
Hpy8I GTNNAC 1 cut(s) 637
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 449
HpyCH4V TGCA 7 cut(s) 57, 196, 313, 369, 437, 567, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpyF3I CTNAG 1 cut(s) 837
Hsp92II CATG 2 cut(s) 196, 582
Kpn2I TCCGGA 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 745
KspAI GTTAAC 1 cut(s) 637
Kzo9I GATC 4 cut(s) 139, 724, 745, 832
LmnI GCTCC 1 cut(s) 589
Lsp1109I GCAGC 2 cut(s) 421, 626
MaeI CTAG 2 cut(s) 605, 668
MaeIII GTNAC 2 cut(s) 642, 689
MalI GATC 4 cut(s) 141, 726, 747, 834
MboI GATC 4 cut(s) 139, 724, 745, 832
MboII GAAGA 4 cut(s) 137, 535, 718, 719
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 6 cut(s) 93, 128, 399, 478, 488, 759
MlyI GAGTC 3 cut(s) 454, 541, 615
MnlI CCTC 7 cut(s) 87, 274, 513, 832, 898, 901, 928
Mph1103I ATGCAT 2 cut(s) 59, 198
MroI TCCGGA 1 cut(s) 624
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 5 cut(s) 300, 491, 560, 636, 756
MspI CCGG 1 cut(s) 625
MspR9I CCNGG 1 cut(s) 507
Mva1269I GAATGC 1 cut(s) 895
MvaI CCWGG 1 cut(s) 507
MwoI GCNNNNNNNGC 1 cut(s) 375
NdeI CATATG 1 cut(s) 325
NdeII GATC 4 cut(s) 139, 724, 745, 832
NlaIII CATG 2 cut(s) 196, 582
NlaIV GGNNCC 2 cut(s) 501, 780
NmuCI GTSAC 1 cut(s) 642
NsiI ATGCAT 2 cut(s) 59, 198
NspI RCATGY 2 cut(s) 196, 582
PaeR7I CTCGAG 1 cut(s) 647
PceI AGGCCT 1 cut(s) 76
PciI ACATGT 1 cut(s) 578
PctI GAATGC 1 cut(s) 895
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 3 cut(s) 335, 422, 809
PflMI CCANNNNNTGG 1 cut(s) 17
PkrI GCNGC 2 cut(s) 436, 616
PleI GAGTC 3 cut(s) 454, 540, 615
PpsI GAGTC 3 cut(s) 454, 540, 615
PpuMI RGGWCCY 1 cut(s) 500
PscI ACATGT 1 cut(s) 578
PshBI ATTAAT 1 cut(s) 491
Psp5II RGGWCCY 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 505
PspGI CCWGG 1 cut(s) 505
PspN4I GGNNCC 2 cut(s) 501, 780
PspPI GGNCC 2 cut(s) 500, 778
PspPPI RGGWCCY 1 cut(s) 500
PspXI VCTCGAGB 1 cut(s) 647
PstI CTGCAG 1 cut(s) 439
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
SaqAI TTAA 5 cut(s) 300, 491, 560, 636, 756
SatI GCNGC 2 cut(s) 435, 615
Sau3AI GATC 4 cut(s) 139, 724, 745, 832
Sau96I GGNCC 2 cut(s) 500, 778
SchI GAGTC 3 cut(s) 454, 541, 615
ScrFI CCNGG 1 cut(s) 507
SduI GDGCHC 1 cut(s) 586
SetI ASST 5 cut(s) 18, 86, 436, 662, 874
SfcI CTRYAG 1 cut(s) 435
Sfr274I CTCGAG 1 cut(s) 647
SinI GGWCC 2 cut(s) 500, 778
SlaI CTCGAG 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 6 cut(s) 93, 128, 399, 478, 488, 759
SseBI AGGCCT 1 cut(s) 76
SsiI CCGC 1 cut(s) 599
SspI AATATT 2 cut(s) 595, 848
SspMI CTAG 2 cut(s) 605, 668
StuI AGGCCT 1 cut(s) 76
StyD4I CCNGG 1 cut(s) 505
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 449
TaqI TCGA 3 cut(s) 164, 648, 916
TasI AATT 6 cut(s) 93, 128, 399, 478, 488, 759
TfiI GAWTC 3 cut(s) 335, 422, 809
Tru1I TTAA 5 cut(s) 300, 491, 560, 636, 756
Tru9I TTAA 5 cut(s) 300, 491, 560, 636, 756
TseFI GTSAC 1 cut(s) 642
TseI GCWGC 2 cut(s) 434, 614
Tsp45I GTSAC 1 cut(s) 642
TspDTI ATGAA 3 cut(s) 251, 435, 719
TspGWI ACGGA 2 cut(s) 245, 472
Van91I CCANNNNNTGG 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 500, 778
VspI ATTAAT 1 cut(s) 491
XapI RAATTY 3 cut(s) 128, 478, 759
XceI RCATGY 2 cut(s) 196, 582
XhoI CTCGAG 1 cut(s) 647
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 2 cut(s) 605, 668
Zsp2I ATGCAT 2 cut(s) 59, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.