Rw7G041380

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000279
Physical Location & Seq
Forward (+)
64546044 .. 64549315
3272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041380.1

Sequence Viewer

Length: 534 bp
ATGGCGGTTTGCTTCACTCATGACTTTTTGAACTCCATAACAAAAGTTAAAGACATTGTGATTCTTTGCGAAGTGCTTGCGTTATTAACCAAGCTTTTGAGTGGATGGTGCCGACCTCTTGAGGACAAAGGAACTTTAGTGTATGATGGGACTTCTGCTCAACTGTTAGAGAAGTATAAAATCAAAGGGAACTTGAATCTCATTTGGACTGTAGATATTCTCCAGGAGAATGCACATTACATCCAAATTATGAAGTTTTGGGATATTTTGCCATTTTCTCATATACCAGAACTAGCAAAGCGTCTTGACATTGTTTTTGGGAATTTTACAGTGGACAAAATGAACCGTTGCCGTCACAACGTTGACAGGTGGTCTTTCTTTGATTTGACTGTAATTCATGATGACCACAAAGATAGTACAGTAACAGTGCTACAAGCTGATTTTTATCGTGCCAATGAGTTGTTAGTACTGACAGATAAGCAAATAGTTTCCAAGGTGACATCTTACCTGTCAAAGTGCATCAAGGACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

177

Amino Acids

20.56

Weight (kDa)

6.58

Isoelectric Point (pI)

29.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AciI CCGC 1 cut(s) 5
AclI AACGTT 1 cut(s) 360
AcsI RAATTY 1 cut(s) 322
AfaI GTAC 2 cut(s) 418, 468
AgsI TTSAA 2 cut(s) 31, 196
AhdI GACNNNNNGTC 1 cut(s) 370
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 2 cut(s) 94, 437
AluI AGCT 2 cut(s) 94, 437
ApoI RAATTY 1 cut(s) 322
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AsuHPI GGTGA 1 cut(s) 508
BanI GGYRCC 1 cut(s) 108
BccI CCATC 2 cut(s) 99, 140
BceAI ACGGC 1 cut(s) 336
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BciT130I CCWGG 1 cut(s) 224
BfaI CTAG 2 cut(s) 293, 532
BfmI CTRYAG 1 cut(s) 210
BmcAI AGTACT 1 cut(s) 468
Bme1390I CCNGG 1 cut(s) 224
BmeRI GACNNNNNGTC 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 528
BpmI CTGGAG 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 492
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 492
BseGI GGATG 2 cut(s) 110, 240
BseJI GATNNNNATC 1 cut(s) 444
BshNI GGYRCC 1 cut(s) 108
BslFI GGGAC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 235
BspACI CCGC 1 cut(s) 5
BspHI TCATGA 2 cut(s) 19, 397
BspLI GGNNCC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 7 cut(s) 165, 211, 331, 347, 391, 421, 427
BstC8I GCNNGC 1 cut(s) 78
BstF5I GGATG 2 cut(s) 110, 240
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 210
BtsCI GGATG 2 cut(s) 110, 240
BtsIMutI CAGTG 2 cut(s) 336, 432
Cac8I GCNNGC 1 cut(s) 78
CciI TCATGA 2 cut(s) 19, 397
CseI GACGC 1 cut(s) 290
Csp6I GTAC 2 cut(s) 417, 467
CviAII CATG 2 cut(s) 20, 398
CviJI RGCY 2 cut(s) 94, 437
CviKI_1 RGCY 2 cut(s) 94, 437
CviQI GTAC 2 cut(s) 417, 467
DriI GACNNNNNGTC 1 cut(s) 370
Eam1105I GACNNNNNGTC 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 492
FaeI CATG 2 cut(s) 23, 401
FaiI YATR 8 cut(s) 21, 38, 144, 177, 251, 282, 284, 399
FaqI GGGAC 1 cut(s) 163
FatI CATG 2 cut(s) 19, 397
FokI GGATG 2 cut(s) 117, 227
FspBI CTAG 2 cut(s) 293, 532
GsuI CTGGAG 1 cut(s) 206
HgaI GACGC 1 cut(s) 290
Hin1II CATG 2 cut(s) 23, 401
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 2 cut(s) 61, 196
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 2 cut(s) 334, 364
Hpy188III TCNNGA 4 cut(s) 20, 119, 305, 398
Hpy8I GTNNAC 2 cut(s) 334, 364
HpyCH4III ACNGT 7 cut(s) 165, 211, 331, 347, 391, 421, 427
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 2 cut(s) 233, 519
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 2 cut(s) 23, 401
LpnPI CCDG 5 cut(s) 209, 236, 300, 352, 521
LweI GCATC 1 cut(s) 528
MaeI CTAG 2 cut(s) 293, 532
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 3 cut(s) 353, 421, 496
MluCI AATT 3 cut(s) 246, 322, 393
MnlI CCTC 2 cut(s) 115, 126
MseI TTAA 2 cut(s) 48, 86
MspR9I CCNGG 1 cut(s) 224
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 1 cut(s) 224
NlaIII CATG 2 cut(s) 23, 401
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 2 cut(s) 353, 496
PagI TCATGA 2 cut(s) 19, 397
PctI GAATGC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 61, 196
PfoI TCCNGGA 1 cut(s) 222
Psp1406I AACGTT 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 110
RsaI GTAC 2 cut(s) 418, 468
RsaNI GTAC 2 cut(s) 417, 467
SaqAI TTAA 2 cut(s) 48, 86
ScaI AGTACT 1 cut(s) 468
ScrFI CCNGG 1 cut(s) 224
SetI ASST 7 cut(s) 96, 118, 363, 371, 439, 498, 510
SfaNI GCATC 1 cut(s) 528
SfcI CTRYAG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 3 cut(s) 246, 322, 393
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 293, 532
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 7 cut(s) 165, 211, 331, 347, 391, 421, 427
TaiI ACGT 1 cut(s) 363
TasI AATT 3 cut(s) 246, 322, 393
TatI WGTACW 2 cut(s) 416, 466
TfiI GAWTC 2 cut(s) 61, 196
Tru1I TTAA 2 cut(s) 48, 86
Tru9I TTAA 2 cut(s) 48, 86
TscAI CASTG 2 cut(s) 336, 432
TseFI GTSAC 2 cut(s) 353, 496
Tsp45I GTSAC 2 cut(s) 353, 496
TspDTI ATGAA 3 cut(s) 266, 356, 386
TspRI CASTG 2 cut(s) 336, 432
XapI RAATTY 1 cut(s) 322
XspI CTAG 2 cut(s) 293, 532
ZrmI AGTACT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.