AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 170 |
| AccBSI | CCGCTC | 1 cut(s) | 13 |
| AciI | CCGC | 2 cut(s) | 13, 105 |
| AcsI | RAATTY | 1 cut(s) | 90 |
| AcvI | CACGTG | 3 cut(s) | 25, 76, 102 |
| AflIII | ACRYGT | 3 cut(s) | 24, 75, 99 |
| AgsI | TTSAA | 1 cut(s) | 88 |
| AjiI | CACGTC | 1 cut(s) | 57 |
| AoxI | GGCC | 1 cut(s) | 180 |
| ApoI | RAATTY | 1 cut(s) | 90 |
| AspS9I | GGNCC | 1 cut(s) | 180 |
| AsuHPI | GGTGA | 1 cut(s) | 51 |
| BanII | GRGCYC | 1 cut(s) | 53 |
| BbrPI | CACGTG | 3 cut(s) | 25, 76, 102 |
| BccI | CCATC | 1 cut(s) | 196 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 48 |
| BmgBI | CACGTC | 1 cut(s) | 57 |
| BmgT120I | GGNCC | 1 cut(s) | 180 |
| BmiI | GGNNCC | 1 cut(s) | 52 |
| BsaAI | YACGTR | 3 cut(s) | 25, 76, 102 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 35, 65 |
| Bse3DI | GCAATG | 2 cut(s) | 153, 192 |
| BseGI | GGATG | 3 cut(s) | 130, 188, 216 |
| BseMI | GCAATG | 2 cut(s) | 153, 192 |
| BshFI | GGCC | 1 cut(s) | 182 |
| BslFI | GGGAC | 1 cut(s) | 164 |
| BsmFI | GGGAC | 1 cut(s) | 164 |
| BsnI | GGCC | 1 cut(s) | 182 |
| Bsp1286I | GDGCHC | 1 cut(s) | 53 |
| BspACI | CCGC | 2 cut(s) | 13, 105 |
| BspANI | GGCC | 1 cut(s) | 182 |
| BspLI | GGNNCC | 1 cut(s) | 52 |
| BsrBI | CCGCTC | 1 cut(s) | 13 |
| BsrDI | GCAATG | 2 cut(s) | 153, 192 |
| BstBAI | YACGTR | 3 cut(s) | 25, 76, 102 |
| BstC8I | GCNNGC | 1 cut(s) | 32 |
| BstEII | GGTNACC | 1 cut(s) | 16 |
| BstF5I | GGATG | 3 cut(s) | 130, 188, 216 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 48, 102 |
| BstNSI | RCATGY | 1 cut(s) | 34 |
| BstPI | GGTNACC | 1 cut(s) | 16 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 80 |
| BsuRI | GGCC | 1 cut(s) | 182 |
| BtrI | CACGTC | 1 cut(s) | 57 |
| BtsCI | GGATG | 3 cut(s) | 130, 188, 216 |
| Cac8I | GCNNGC | 1 cut(s) | 32 |
| Cfr13I | GGNCC | 1 cut(s) | 180 |
| CviAII | CATG | 2 cut(s) | 31, 138 |
| CviJI | RGCY | 4 cut(s) | 42, 51, 84, 182 |
| CviKI_1 | RGCY | 4 cut(s) | 42, 51, 84, 182 |
| Eco24I | GRGCYC | 1 cut(s) | 53 |
| Eco72I | CACGTG | 3 cut(s) | 25, 76, 102 |
| Eco91I | GGTNACC | 1 cut(s) | 16 |
| EcoO65I | GGTNACC | 1 cut(s) | 16 |
| EcoT38I | GRGCYC | 1 cut(s) | 53 |
| FaeI | CATG | 2 cut(s) | 34, 141 |
| FaiI | YATR | 8 cut(s) | 32, 81, 124, 126, 128, 139, 162, 170 |
| FaqI | GGGAC | 1 cut(s) | 164 |
| FatI | CATG | 2 cut(s) | 30, 137 |
| FauI | CCCGC | 2 cut(s) | 6, 98 |
| FokI | GGATG | 2 cut(s) | 117, 175 |
| FriOI | GRGCYC | 1 cut(s) | 53 |
| HaeIII | GGCC | 1 cut(s) | 182 |
| Hin1II | CATG | 2 cut(s) | 34, 141 |
| HphI | GGTGA | 1 cut(s) | 51 |
| Hpy166II | GTNNAC | 1 cut(s) | 73 |
| Hpy188I | TCNGA | 1 cut(s) | 10 |
| Hpy8I | GTNNAC | 1 cut(s) | 73 |
| HpyCH4IV | ACGT | 4 cut(s) | 24, 56, 75, 101 |
| HpyCH4V | TGCA | 1 cut(s) | 30 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 48, 102 |
| HpySE526I | ACGT | 4 cut(s) | 24, 56, 75, 101 |
| Hsp92II | CATG | 2 cut(s) | 34, 141 |
| LmnI | GCTCC | 1 cut(s) | 56 |
| MaeII | ACGT | 4 cut(s) | 24, 56, 75, 101 |
| MaeIII | GTNAC | 2 cut(s) | 16, 57 |
| MbiI | CCGCTC | 1 cut(s) | 13 |
| MfeI | CAATTG | 1 cut(s) | 199 |
| MhlI | GDGCHC | 1 cut(s) | 53 |
| MluCI | AATT | 2 cut(s) | 90, 199 |
| MnlI | CCTC | 1 cut(s) | 45 |
| MslI | CAYNNNNRTG | 1 cut(s) | 78 |
| MunI | CAATTG | 1 cut(s) | 199 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 48, 102 |
| NlaIII | CATG | 2 cut(s) | 34, 141 |
| NlaIV | GGNNCC | 1 cut(s) | 52 |
| NmuCI | GTSAC | 1 cut(s) | 57 |
| NspI | RCATGY | 1 cut(s) | 34 |
| PaeI | GCATGC | 1 cut(s) | 34 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 53 |
| PmaCI | CACGTG | 3 cut(s) | 25, 76, 102 |
| PmlI | CACGTG | 3 cut(s) | 25, 76, 102 |
| Ppu21I | YACGTR | 3 cut(s) | 25, 76, 102 |
| PsiI | TTATAA | 1 cut(s) | 170 |
| PspCI | CACGTG | 3 cut(s) | 25, 76, 102 |
| PspEI | GGTNACC | 1 cut(s) | 16 |
| PspN4I | GGNNCC | 1 cut(s) | 52 |
| PspPI | GGNCC | 1 cut(s) | 180 |
| RseI | CAYNNNNRTG | 1 cut(s) | 78 |
| Sau96I | GGNCC | 1 cut(s) | 180 |
| SduI | GDGCHC | 1 cut(s) | 53 |
| SetI | ASST | 4 cut(s) | 27, 59, 78, 104 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 78 |
| SphI | GCATGC | 1 cut(s) | 34 |
| Sse9I | AATT | 2 cut(s) | 90, 199 |
| SsiI | CCGC | 2 cut(s) | 13, 105 |
| TaiI | ACGT | 4 cut(s) | 27, 59, 78, 104 |
| TasI | AATT | 2 cut(s) | 90, 199 |
| TseFI | GTSAC | 1 cut(s) | 57 |
| Tsp45I | GTSAC | 1 cut(s) | 57 |
| XapI | RAATTY | 1 cut(s) | 90 |
| XceI | RCATGY | 1 cut(s) | 34 |