RchiOBHm_Chr3g0488431

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000279
Physical Location & Seq
Forward (+)
36126613 .. 36127511
899 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45278

Sequence Viewer

Length: 327 bp
ATGGGGAAGAATAGTAAGCTGAAACAGGAACAAGTTACAGATACAAGAAGCCTAGTGGATTTGGTATTCTCTTGGTCTATTAGGGATATTCTCAATGACAACCTTTACAGAAATCAGACGATCCCCAACACATTTGTGACATTGACGAGTTACAAGAAGTCATTCATTCCTTCACTTGTTGAGGAAGCTCATGCTGATTTACTATCGAATATGTTGACTCTGTCACATGCACCTACTTGTGAAATTCTGACAATTGAAGATTCAGCTGGACCTCCTGGTGACTTGTTTTACGATAAAACATCAGTTATGAGAATCACAAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

108

Amino Acids

12.19

Weight (kDa)

5.27

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 115
AcsI RAATTY 1 cut(s) 243
AgsI TTSAA 1 cut(s) 257
AjnI CCWGG 1 cut(s) 274
AleI CACNNNNGTG 1 cut(s) 134
AluBI AGCT 3 cut(s) 19, 188, 266
AluI AGCT 3 cut(s) 19, 188, 266
AlwI GGATC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 243
Asp700I GAANNNNTTC 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 276
BfaI CTAG 1 cut(s) 53
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 276
Bsp143I GATC 1 cut(s) 120
BspPI GGATC 1 cut(s) 115
BssMI GATC 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 276
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 269
CviAII CATG 2 cut(s) 191, 227
CviJI RGCY 4 cut(s) 19, 51, 188, 266
CviKI_1 RGCY 4 cut(s) 19, 51, 188, 266
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 194, 230
FaiI YATR 4 cut(s) 192, 212, 228, 308
FatI CATG 2 cut(s) 190, 226
FspBI CTAG 1 cut(s) 53
Hin1II CATG 2 cut(s) 194, 230
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 3 cut(s) 217, 260, 312
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 2 cut(s) 117, 249
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 230
Hsp92II CATG 2 cut(s) 194, 230
Kzo9I GATC 1 cut(s) 120
LpnPI CCDG 4 cut(s) 11, 252, 261, 288
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 5 cut(s) 34, 136, 149, 222, 278
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 2 cut(s) 19, 269
MfeI CAATTG 1 cut(s) 252
MluCI AATT 2 cut(s) 243, 252
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 2 cut(s) 175, 282
MroXI GAANNNNTTC 1 cut(s) 161
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 276
MunI CAATTG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 276
NdeII GATC 1 cut(s) 120
NlaIII CATG 2 cut(s) 194, 230
NmuCI GTSAC 3 cut(s) 136, 222, 278
NspI RCATGY 1 cut(s) 230
OliI CACNNNNGTG 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 260, 312
PflFI GACNNNGTC 1 cut(s) 220
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspPI GGNCC 1 cut(s) 269
PsyI GACNNNGTC 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 134
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 276
SetI ASST 6 cut(s) 21, 105, 190, 235, 268, 274
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 2 cut(s) 243, 252
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 274
TaqI TCGA 1 cut(s) 206
TasI AATT 2 cut(s) 243, 252
TfiI GAWTC 2 cut(s) 260, 312
TseFI GTSAC 3 cut(s) 136, 222, 278
Tsp45I GTSAC 3 cut(s) 136, 222, 278
TspDTI ATGAA 1 cut(s) 154
Tth111I GACNNNGTC 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 1 cut(s) 243
XceI RCATGY 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.