AAA domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 3 - 79 | 1.7e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 172 |
| AcoI | YGGCCR | 1 cut(s) | 9 |
| AfaI | GTAC | 2 cut(s) | 166, 219 |
| AgsI | TTSAA | 1 cut(s) | 53 |
| AluBI | AGCT | 3 cut(s) | 31, 230, 239 |
| AluI | AGCT | 3 cut(s) | 31, 230, 239 |
| AoxI | GGCC | 1 cut(s) | 9 |
| ApeKI | GCWGC | 3 cut(s) | 28, 31, 86 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 31, 63 |
| BalI | TGGCCA | 1 cut(s) | 11 |
| BbsI | GAAGAC | 1 cut(s) | 41 |
| BbvI | GCAGC | 3 cut(s) | 18, 40, 73 |
| BfaI | CTAG | 3 cut(s) | 198, 227, 231 |
| BfuAI | ACCTGC | 1 cut(s) | 172 |
| BisI | GCNGC | 3 cut(s) | 29, 32, 87 |
| BlsI | GCNGC | 3 cut(s) | 30, 33, 88 |
| BmcAI | AGTACT | 1 cut(s) | 166 |
| BpiI | GAAGAC | 1 cut(s) | 41 |
| Bse3DI | GCAATG | 1 cut(s) | 96 |
| BseMI | GCAATG | 1 cut(s) | 96 |
| BseXI | GCAGC | 3 cut(s) | 18, 40, 73 |
| BshFI | GGCC | 1 cut(s) | 11 |
| BsnI | GGCC | 1 cut(s) | 11 |
| BspANI | GGCC | 1 cut(s) | 11 |
| BspMI | ACCTGC | 1 cut(s) | 172 |
| BsrDI | GCAATG | 1 cut(s) | 96 |
| Bst4CI | ACNGT | 1 cut(s) | 214 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 236 |
| BstV1I | GCAGC | 3 cut(s) | 18, 40, 73 |
| BstV2I | GAAGAC | 1 cut(s) | 41 |
| BsuRI | GGCC | 1 cut(s) | 11 |
| BveI | ACCTGC | 1 cut(s) | 172 |
| Csp6I | GTAC | 2 cut(s) | 165, 218 |
| CviAII | CATG | 2 cut(s) | 113, 160 |
| CviJI | RGCY | 5 cut(s) | 11, 31, 86, 230, 239 |
| CviKI_1 | RGCY | 5 cut(s) | 11, 31, 86, 230, 239 |
| CviQI | GTAC | 2 cut(s) | 165, 218 |
| EaeI | YGGCCR | 1 cut(s) | 9 |
| Eco32I | GATATC | 1 cut(s) | 148 |
| EcoRV | GATATC | 1 cut(s) | 148 |
| FaeI | CATG | 2 cut(s) | 116, 163 |
| FaiI | YATR | 4 cut(s) | 114, 161, 257, 259 |
| FatI | CATG | 2 cut(s) | 112, 159 |
| Fnu4HI | GCNGC | 3 cut(s) | 29, 32, 87 |
| Fsp4HI | GCNGC | 3 cut(s) | 29, 32, 87 |
| FspBI | CTAG | 3 cut(s) | 198, 227, 231 |
| GluI | GCNGC | 3 cut(s) | 29, 32, 87 |
| HaeIII | GGCC | 1 cut(s) | 11 |
| Hin1II | CATG | 2 cut(s) | 116, 163 |
| HinfI | GANTC | 1 cut(s) | 135 |
| Hpy188III | TCNNGA | 1 cut(s) | 174 |
| HpyCH4III | ACNGT | 1 cut(s) | 214 |
| HpyCH4V | TGCA | 2 cut(s) | 28, 181 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 236 |
| Hsp92II | CATG | 2 cut(s) | 116, 163 |
| LmnI | GCTCC | 2 cut(s) | 39, 199 |
| LpnPI | CCDG | 2 cut(s) | 159, 167 |
| Lsp1109I | GCAGC | 3 cut(s) | 18, 40, 73 |
| MaeI | CTAG | 3 cut(s) | 198, 227, 231 |
| MaeIII | GTNAC | 1 cut(s) | 206 |
| MboII | GAAGA | 1 cut(s) | 41 |
| MlsI | TGGCCA | 1 cut(s) | 11 |
| MluCI | AATT | 2 cut(s) | 69, 187 |
| MluNI | TGGCCA | 1 cut(s) | 11 |
| MnlI | CCTC | 3 cut(s) | 13, 76, 238 |
| Mox20I | TGGCCA | 1 cut(s) | 11 |
| MscI | TGGCCA | 1 cut(s) | 11 |
| MseI | TTAA | 3 cut(s) | 15, 126, 186 |
| Msp20I | TGGCCA | 1 cut(s) | 11 |
| MspA1I | CMGCKG | 1 cut(s) | 31 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 236 |
| NlaIII | CATG | 2 cut(s) | 116, 163 |
| PfeI | GAWTC | 1 cut(s) | 135 |
| PkrI | GCNGC | 3 cut(s) | 30, 33, 88 |
| PvuII | CAGCTG | 1 cut(s) | 31 |
| RsaI | GTAC | 2 cut(s) | 166, 219 |
| RsaNI | GTAC | 2 cut(s) | 165, 218 |
| SaqAI | TTAA | 3 cut(s) | 15, 126, 186 |
| SatI | GCNGC | 3 cut(s) | 29, 32, 87 |
| ScaI | AGTACT | 1 cut(s) | 166 |
| SetI | ASST | 5 cut(s) | 33, 156, 186, 232, 241 |
| Sse9I | AATT | 2 cut(s) | 69, 187 |
| SspMI | CTAG | 3 cut(s) | 198, 227, 231 |
| TaaI | ACNGT | 1 cut(s) | 214 |
| TaqI | TCGA | 1 cut(s) | 66 |
| TasI | AATT | 2 cut(s) | 69, 187 |
| TatI | WGTACW | 2 cut(s) | 164, 217 |
| TfiI | GAWTC | 1 cut(s) | 135 |
| Tru1I | TTAA | 3 cut(s) | 15, 126, 186 |
| Tru9I | TTAA | 3 cut(s) | 15, 126, 186 |
| TseI | GCWGC | 3 cut(s) | 28, 31, 86 |
| XspI | CTAG | 3 cut(s) | 198, 227, 231 |
| ZrmI | AGTACT | 1 cut(s) | 166 |