Rmu_co8427783.1_g000001

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8427783.1
OG0000279
Physical Location & Seq
Forward (+)
1 .. 1467
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8427783.1_g000001.1.cds

Sequence Viewer

Length: 1043 bp
gtgcaggggatccccgacacatttgtgacatcgacaagttacaggaaatcattcattccttcacttcttgaggaaactcatgctgatttactatcgaatatgaagactctgtcacatgcacctacttgtgaaatactgtcaatcgaagattcagctagacctcctggtgacttgttttacgatataatgtataatagagatacagaaactgatgagaatcacaaaggaccgatgtatgagccacaggttggagatatcattgccttgacaaatgttagaccaaattgcattgatgatttgaacaggcctccaaggttctatctaatcgcttatgttcataaagcaaatgatattgatgaatttcctgatgatctccagttcaaaatactatcatcgaagcctatcaactatggagaaccagatatgcataagagcaatagagaaacactttttgctgtctatcttatgaacttgattacatatctccgtgtatggaaggctttgaactcagagggaaatacaaatatcattaacaaagttctgcaacccaagtcagatgatggggattcttgttcagtttgcttccccagggaaaaatgctacactggcatttctgctatatggcctacaatttgctctcaaaatctaaatgaatcccaagaagctgcggttttgaactgtatcagtgtggctcaatgccatcaccagaattctgtaaaattaatatggggtcctcctggtactggcaagacgaagacaatgagtctgacactctttgctctctttcatttaaagtgcagaactctcacatgtgctcccaccaatattgcagtgctagaagtagcagcaagactccggagattggttaaccagtcactcgagtacggcaggtatggactaggagatatagttctctttggtaacaagaagcgaatgaagattgacaacaatgatgatcttcatgacatatttcttgatcatcgtgttaaaatcctcatcaagtgtttggtccctttatctgggtggaaacatttgttagaatc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

348

Amino Acids

39.39

Weight (kDa)

6.28

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 879
AccB7I CCANNNNNTGG 1 cut(s) 248
AccIII TCCGGA 1 cut(s) 855
AciI CCGC 1 cut(s) 668
AclWI GGATC 2 cut(s) 4, 17
AcsI RAATTY 2 cut(s) 359, 709
AfaI GTAC 2 cut(s) 742, 884
AfiI CCNNNNNNNGG 4 cut(s) 248, 743, 862, 1019
AflIII ACRYGT 1 cut(s) 809
AgsI TTSAA 4 cut(s) 301, 382, 505, 676
AhdI GACNNNNNGTC 1 cut(s) 762
AjnI CCWGG 3 cut(s) 163, 587, 736
AleI CACNNNNGTG 1 cut(s) 23
AloI GAACNNNNNNTCC 2 cut(s) 894, 926
AluBI AGCT 2 cut(s) 155, 665
AluI AGCT 2 cut(s) 155, 665
Alw21I GWGCWC 1 cut(s) 817
AlwI GGATC 2 cut(s) 4, 17
AlwNI CAGNNNCTG 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 878
Aor13HI TCCGGA 1 cut(s) 855
AoxI GGCC 2 cut(s) 305, 623
ApeKI GCWGC 2 cut(s) 665, 845
ApoI RAATTY 2 cut(s) 359, 709
AseI ATTAAT 1 cut(s) 722
Asp700I GAANNNNTTC 1 cut(s) 50
AspS9I GGNCC 3 cut(s) 227, 731, 1009
AsuHPI GGTGA 2 cut(s) 179, 695
AvaI CYCGRG 1 cut(s) 878
AvaII GGWCC 3 cut(s) 227, 731, 1009
BamHI GGATCC 1 cut(s) 9
BbsI GAAGAC 2 cut(s) 110, 761
Bbv12I GWGCWC 1 cut(s) 817
BbvI GCAGC 2 cut(s) 652, 857
BccI CCATC 2 cut(s) 554, 708
BceAI ACGGC 1 cut(s) 901
BciT130I CCWGG 3 cut(s) 165, 589, 738
BclI TGATCA 1 cut(s) 976
BfaI CTAG 3 cut(s) 156, 836, 899
BfuAI ACCTGC 1 cut(s) 879
BisI GCNGC 2 cut(s) 666, 846
BlsI GCNGC 2 cut(s) 667, 847
Bme1390I CCNGG 3 cut(s) 165, 589, 738
Bme18I GGWCC 3 cut(s) 227, 731, 1009
BmeRI GACNNNNNGTC 1 cut(s) 762
BmeT110I CYCGRG 1 cut(s) 878
BmgT120I GGNCC 3 cut(s) 227, 731, 1009
BmiI GGNNCC 3 cut(s) 11, 732, 1011
BmrFI CCNGG 3 cut(s) 165, 589, 738
BpiI GAAGAC 2 cut(s) 110, 761
BpmI CTGGAG 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 311, 587, 588
BsaWI WCCGGW 1 cut(s) 855
BsaXI ACNNNNNCTCC 4 cut(s) 799, 829, 894, 924
Bsc4I CCNNNNNNNGG 4 cut(s) 248, 743, 862, 1019
Bse1I ACTGG 4 cut(s) 376, 610, 748, 871
Bse3DI GCAATG 1 cut(s) 258
Bse8I GATNNNNATC 1 cut(s) 216
BseAI TCCGGA 1 cut(s) 855
BseBI CCWGG 3 cut(s) 165, 589, 738
BseDI CCNNGG 3 cut(s) 311, 587, 588
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 4 cut(s) 248, 743, 862, 1019
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 4 cut(s) 376, 610, 748, 871
BseXI GCAGC 2 cut(s) 652, 857
BsgI GTGCAG 2 cut(s) 23, 817
BshFI GGCC 2 cut(s) 307, 625
BsiHKAI GWGCWC 1 cut(s) 817
BsiHKCI CYCGRG 1 cut(s) 878
BsiSI CCGG 1 cut(s) 856
BslFI GGGAC 1 cut(s) 995
BslI CCNNNNNNNGG 4 cut(s) 248, 743, 862, 1019
BsmFI GGGAC 1 cut(s) 995
BsnI GGCC 2 cut(s) 307, 625
BsoBI CYCGRG 1 cut(s) 878
Bsp1286I GDGCHC 1 cut(s) 817
Bsp13I TCCGGA 1 cut(s) 855
Bsp143I GATC 4 cut(s) 9, 370, 955, 976
BspACI CCGC 1 cut(s) 668
BspANI GGCC 2 cut(s) 307, 625
BspCNI CTCAG 1 cut(s) 521
BspEI TCCGGA 1 cut(s) 855
BspHI TCATGA 1 cut(s) 961
BspLI GGNNCC 3 cut(s) 11, 732, 1011
BspMI ACCTGC 1 cut(s) 879
BspPI GGATC 2 cut(s) 4, 17
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 4 cut(s) 376, 610, 748, 871
BssECI CCNNGG 3 cut(s) 311, 587, 588
BssMI GATC 4 cut(s) 9, 370, 955, 976
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 3 cut(s) 165, 589, 738
Bst4CI ACNGT 2 cut(s) 138, 680
BstDEI CTNAG 1 cut(s) 508
BstKTI GATC 4 cut(s) 12, 373, 958, 979
BstMBI GATC 4 cut(s) 9, 370, 955, 976
BstMWI GCNNNNNNNGC 1 cut(s) 606
BstNI CCWGG 3 cut(s) 165, 589, 738
BstNSI RCATGY 2 cut(s) 119, 813
BstSCI CCNGG 3 cut(s) 163, 587, 736
BstV1I GCAGC 2 cut(s) 652, 857
BstV2I GAAGAC 2 cut(s) 110, 761
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 2 cut(s) 307, 625
BtsI GCAGTG 1 cut(s) 837
BtsIMutI CAGTG 3 cut(s) 603, 691, 837
BveI ACCTGC 1 cut(s) 879
CaiI CAGNNNCTG 1 cut(s) 209
CciI TCATGA 1 cut(s) 961
Cfr13I GGNCC 3 cut(s) 227, 731, 1009
Csp6I GTAC 2 cut(s) 741, 883
CspCI CAANNNNNGTGG 2 cut(s) 808, 843
CviAII CATG 4 cut(s) 80, 116, 810, 962
CviJI RGCY 8 cut(s) 155, 241, 307, 400, 500, 625, 665, 692
CviKI_1 RGCY 8 cut(s) 155, 241, 307, 400, 500, 625, 665, 692
CviQI GTAC 2 cut(s) 741, 883
DdeI CTNAG 1 cut(s) 508
DpnI GATC 4 cut(s) 11, 372, 957, 978
DpnII GATC 4 cut(s) 9, 370, 955, 976
DraI TTTAAA 1 cut(s) 792
DriI GACNNNNNGTC 1 cut(s) 762
Eam1105I GACNNNNNGTC 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 311
Eco147I AGGCCT 1 cut(s) 307
Eco32I GATATC 1 cut(s) 256
Eco47I GGWCC 3 cut(s) 227, 731, 1009
Eco88I CYCGRG 1 cut(s) 878
EcoO109I RGGNCCY 1 cut(s) 731
EcoRI GAATTC 1 cut(s) 709
EcoRII CCWGG 3 cut(s) 163, 587, 736
EcoRV GATATC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 311
EcoT22I ATGCAT 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 4 cut(s) 83, 119, 813, 965
FaqI GGGAC 1 cut(s) 995
FatI CATG 4 cut(s) 79, 115, 809, 961
FbaI TGATCA 1 cut(s) 976
Fnu4HI GCNGC 2 cut(s) 666, 846
Fsp4HI GCNGC 2 cut(s) 666, 846
FspBI CTAG 3 cut(s) 156, 836, 899
GluI GCNGC 2 cut(s) 666, 846
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 2 cut(s) 307, 625
HapII CCGG 1 cut(s) 856
Hin1II CATG 4 cut(s) 83, 119, 813, 965
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HinfI GANTC 8 cut(s) 106, 149, 217, 566, 653, 763, 852, 1040
HpaI GTTAAC 1 cut(s) 868
HpaII CCGG 1 cut(s) 856
HphI GGTGA 2 cut(s) 179, 695
Hpy166II GTNNAC 1 cut(s) 868
Hpy188I TCNGA 3 cut(s) 511, 556, 768
Hpy188III TCNNGA 5 cut(s) 68, 365, 856, 962, 974
Hpy8I GTNNAC 1 cut(s) 868
HpyAV CCTTC 2 cut(s) 69, 490
HpyCH4III ACNGT 2 cut(s) 138, 680
HpyCH4V TGCA 7 cut(s) 4, 119, 288, 427, 544, 798, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 606
HpyF3I CTNAG 1 cut(s) 508
Hsp92II CATG 4 cut(s) 83, 119, 813, 965
Kpn2I TCCGGA 1 cut(s) 855
Ksp22I TGATCA 1 cut(s) 976
KspAI GTTAAC 1 cut(s) 868
Kzo9I GATC 4 cut(s) 9, 370, 955, 976
LmnI GCTCC 1 cut(s) 820
Lsp1109I GCAGC 2 cut(s) 652, 857
MaeI CTAG 3 cut(s) 156, 836, 899
MaeIII GTNAC 6 cut(s) 25, 38, 111, 167, 873, 920
MalI GATC 4 cut(s) 11, 372, 957, 978
MboI GATC 4 cut(s) 9, 370, 955, 976
MboII GAAGA 5 cut(s) 115, 158, 766, 949, 950
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 817
MluCI AATT 5 cut(s) 283, 359, 630, 709, 719
MlyI GAGTC 3 cut(s) 100, 772, 846
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 6 cut(s) 64, 171, 318, 505, 744, 1004
Mph1103I ATGCAT 1 cut(s) 429
MroI TCCGGA 1 cut(s) 855
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 5 cut(s) 531, 722, 791, 867, 987
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 1 cut(s) 856
MspR9I CCNGG 3 cut(s) 165, 589, 738
MvaI CCWGG 3 cut(s) 165, 589, 738
MwoI GCNNNNNNNGC 1 cut(s) 606
NdeII GATC 4 cut(s) 9, 370, 955, 976
NlaIII CATG 4 cut(s) 83, 119, 813, 965
NlaIV GGNNCC 3 cut(s) 11, 732, 1011
NmuCI GTSAC 4 cut(s) 25, 111, 167, 873
NsiI ATGCAT 1 cut(s) 429
NspI RCATGY 2 cut(s) 119, 813
OliI CACNNNNGTG 1 cut(s) 23
PaeR7I CTCGAG 1 cut(s) 878
PagI TCATGA 1 cut(s) 961
PasI CCCWGGG 1 cut(s) 588
PceI AGGCCT 1 cut(s) 307
PciI ACATGT 1 cut(s) 809
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 5 cut(s) 149, 217, 566, 653, 1040
PflFI GACNNNGTC 1 cut(s) 109
PflMI CCANNNNNTGG 1 cut(s) 248
PkrI GCNGC 2 cut(s) 667, 847
PleI GAGTC 3 cut(s) 100, 771, 846
PpsI GAGTC 3 cut(s) 100, 771, 846
PpuMI RGGWCCY 1 cut(s) 731
PscI ACATGT 1 cut(s) 809
PshBI ATTAAT 1 cut(s) 722
Psp5II RGGWCCY 1 cut(s) 731
Psp6I CCWGG 3 cut(s) 163, 587, 736
PspGI CCWGG 3 cut(s) 163, 587, 736
PspN4I GGNNCC 3 cut(s) 11, 732, 1011
PspPI GGNCC 3 cut(s) 227, 731, 1009
PspPPI RGGWCCY 1 cut(s) 731
PspXI VCTCGAGB 1 cut(s) 878
PstNI CAGNNNCTG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 9
PsyI GACNNNGTC 1 cut(s) 109
RsaI GTAC 2 cut(s) 742, 884
RsaNI GTAC 2 cut(s) 741, 883
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 5 cut(s) 531, 722, 791, 867, 987
SatI GCNGC 2 cut(s) 666, 846
Sau3AI GATC 4 cut(s) 9, 370, 955, 976
Sau96I GGNCC 3 cut(s) 227, 731, 1009
SchI GAGTC 3 cut(s) 100, 772, 846
ScrFI CCNGG 3 cut(s) 165, 589, 738
SduI GDGCHC 1 cut(s) 817
SetI ASST 7 cut(s) 124, 157, 163, 249, 317, 667, 893
Sfr274I CTCGAG 1 cut(s) 878
SinI GGWCC 3 cut(s) 227, 731, 1009
SlaI CTCGAG 1 cut(s) 878
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 2 cut(s) 68, 878
SmoI CTYRAG 2 cut(s) 68, 878
Sse9I AATT 5 cut(s) 283, 359, 630, 709, 719
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 1 cut(s) 668
SspI AATATT 1 cut(s) 826
SspMI CTAG 3 cut(s) 156, 836, 899
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 3 cut(s) 163, 587, 736
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 2 cut(s) 138, 680
TaqI TCGA 5 cut(s) 32, 95, 144, 395, 879
TaqII GACCGA 1 cut(s) 244
TasI AATT 5 cut(s) 283, 359, 630, 709, 719
TfiI GAWTC 5 cut(s) 149, 217, 566, 653, 1040
Tru1I TTAA 5 cut(s) 531, 722, 791, 867, 987
Tru9I TTAA 5 cut(s) 531, 722, 791, 867, 987
TscAI CASTG 3 cut(s) 610, 691, 837
TseFI GTSAC 4 cut(s) 25, 111, 167, 873
TseI GCWGC 2 cut(s) 665, 845
Tsp45I GTSAC 4 cut(s) 25, 111, 167, 873
TspDTI ATGAA 9 cut(s) 43, 116, 326, 372, 482, 666, 776, 950, 950
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 3 cut(s) 610, 691, 837
Tth111I GACNNNGTC 1 cut(s) 109
Van91I CCANNNNNTGG 1 cut(s) 248
VpaK11BI GGWCC 3 cut(s) 227, 731, 1009
VspI ATTAAT 1 cut(s) 722
XapI RAATTY 2 cut(s) 359, 709
XceI RCATGY 2 cut(s) 119, 813
XhoI CTCGAG 1 cut(s) 878
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 3 cut(s) 156, 836, 899
Zsp2I ATGCAT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.