AAA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1242 |
| AccB1I | GGYRCC | 2 cut(s) | 232, 2718 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 359, 866, 1000 |
| AccII | CGCG | 1 cut(s) | 229 |
| AciI | CCGC | 3 cut(s) | 229, 658, 2591 |
| AcoI | YGGCCR | 1 cut(s) | 2996 |
| AcuI | CTGAAG | 1 cut(s) | 3059 |
| AcvI | CACGTG | 1 cut(s) | 2393 |
| AcyI | GRCGYC | 1 cut(s) | 2719 |
| AdeI | CACNNNGTG | 2 cut(s) | 759, 1547 |
| AfaI | GTAC | 7 cut(s) | 594, 1331, 1364, 1630, 2230, 2385, 2844 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 228, 229, 359, 866, 985, 1000, 1142 |
| AflIII | ACRYGT | 3 cut(s) | 595, 2390, 2839 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2757 |
| AhlI | ACTAGT | 1 cut(s) | 1852 |
| AjnI | CCWGG | 3 cut(s) | 111, 859, 1744 |
| Alw21I | GWGCWC | 1 cut(s) | 1271 |
| Alw26I | GTCTC | 7 cut(s) | 125, 313, 382, 1318, 1843, 2529, 3071 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 866 |
| AoxI | GGCC | 2 cut(s) | 2996, 3150 |
| ApeKI | GCWGC | 4 cut(s) | 726, 788, 1700, 2949 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2178, 2210, 2900, 2932 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1500, 1994, 2704 |
| AspLEI | GCGC | 1 cut(s) | 2721 |
| AspS9I | GGNCC | 3 cut(s) | 854, 1510, 1961 |
| AsuHPI | GGTGA | 6 cut(s) | 374, 818, 1271, 2169, 2306, 2746 |
| AvaII | GGWCC | 3 cut(s) | 854, 1510, 1961 |
| BaeGI | GKGCMC | 1 cut(s) | 235 |
| BalI | TGGCCA | 1 cut(s) | 2998 |
| BamHI | GGATCC | 2 cut(s) | 1186, 2790 |
| BanI | GGYRCC | 2 cut(s) | 232, 2718 |
| BanII | GRGCYC | 1 cut(s) | 1271 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1922, 1954 |
| BbrPI | CACGTG | 1 cut(s) | 2393 |
| BbsI | GAAGAC | 1 cut(s) | 1742 |
| Bbv12I | GWGCWC | 1 cut(s) | 1271 |
| BbvI | GCAGC | 4 cut(s) | 713, 775, 1687, 2936 |
| BceAI | ACGGC | 1 cut(s) | 989 |
| BciT130I | CCWGG | 3 cut(s) | 113, 861, 1746 |
| BclI | TGATCA | 1 cut(s) | 1099 |
| BcoDI | GTCTC | 7 cut(s) | 125, 313, 382, 1318, 1843, 2529, 3071 |
| BcuI | ACTAGT | 1 cut(s) | 1852 |
| BfaI | CTAG | 4 cut(s) | 744, 1160, 1491, 1853 |
| BfmI | CTRYAG | 1 cut(s) | 789 |
| BfoI | RGCGCY | 1 cut(s) | 2722 |
| BisI | GCNGC | 4 cut(s) | 727, 789, 1701, 2950 |
| BlpI | GCTNAGC | 2 cut(s) | 1270, 1704 |
| BlsI | GCNGC | 4 cut(s) | 728, 790, 1702, 2951 |
| BmcAI | AGTACT | 1 cut(s) | 1331 |
| Bme1390I | CCNGG | 3 cut(s) | 113, 861, 1746 |
| Bme18I | GGWCC | 3 cut(s) | 854, 1510, 1961 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2757 |
| BmgT120I | GGNCC | 3 cut(s) | 854, 1510, 1961 |
| BmiI | GGNNCC | 6 cut(s) | 234, 855, 977, 1188, 2720, 2792 |
| BmrFI | CCNGG | 3 cut(s) | 113, 861, 1746 |
| BmsI | GCATC | 8 cut(s) | 500, 1223, 1643, 1912, 2464, 2546, 3113, 3134 |
| BpiI | GAAGAC | 1 cut(s) | 1742 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 122, 154 |
| BpmI | CTGGAG | 1 cut(s) | 843 |
| Bpu10I | CCTNAGC | 1 cut(s) | 732 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1270, 1704 |
| BpuEI | CTTGAG | 6 cut(s) | 193, 203, 1106, 1202, 2021, 2987 |
| BsaAI | YACGTR | 2 cut(s) | 596, 2393 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2312 |
| BsaHI | GRCGYC | 1 cut(s) | 2719 |
| BsaI | GGTCTC | 1 cut(s) | 382 |
| BsaJI | CCNNGG | 4 cut(s) | 267, 860, 2287, 3167 |
| BsaWI | WCCGGW | 2 cut(s) | 1142, 3155 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 922, 952, 1313, 1343 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 228, 229, 359, 866, 985, 1000, 1142 |
| Bse1I | ACTGG | 7 cut(s) | 871, 994, 1404, 1680, 1891, 2254, 2999 |
| Bse3DI | GCAATG | 3 cut(s) | 369, 1485, 2646 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2312 |
| BseBI | CCWGG | 3 cut(s) | 113, 861, 1746 |
| BseDI | CCNNGG | 4 cut(s) | 267, 860, 2287, 3167 |
| BseGI | GGATG | 5 cut(s) | 1400, 1903, 2308, 2686, 3125 |
| BseJI | GATNNNNATC | 1 cut(s) | 2312 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 228, 229, 359, 866, 985, 1000, 1142 |
| BseMI | GCAATG | 3 cut(s) | 369, 1485, 2646 |
| BseNI | ACTGG | 7 cut(s) | 871, 994, 1404, 1680, 1891, 2254, 2999 |
| BseRI | GAGGAG | 5 cut(s) | 331, 525, 528, 1066, 1451 |
| BseSI | GKGCMC | 1 cut(s) | 235 |
| BseXI | GCAGC | 4 cut(s) | 713, 775, 1687, 2936 |
| BsgI | GTGCAG | 2 cut(s) | 940, 1337 |
| Bsh1236I | CGCG | 1 cut(s) | 229 |
| Bsh1285I | CGRYCG | 1 cut(s) | 144 |
| BshFI | GGCC | 2 cut(s) | 2998, 3152 |
| BshNI | GGYRCC | 2 cut(s) | 232, 2718 |
| BsiEI | CGRYCG | 1 cut(s) | 144 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1271 |
| BsiSI | CCGG | 2 cut(s) | 1143, 3156 |
| BsiWI | CGTACG | 1 cut(s) | 592 |
| BslFI | GGGAC | 4 cut(s) | 205, 877, 2987, 3092 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 228, 229, 359, 866, 985, 1000, 1142 |
| BsmAI | GTCTC | 7 cut(s) | 125, 313, 382, 1318, 1843, 2529, 3071 |
| BsmBI | CGTCTC | 1 cut(s) | 125 |
| BsmFI | GGGAC | 4 cut(s) | 205, 877, 2987, 3092 |
| BsmI | GAATGC | 2 cut(s) | 1825, 1905 |
| BsnI | GGCC | 2 cut(s) | 2998, 3152 |
| Bso31I | GGTCTC | 1 cut(s) | 382 |
| Bsp1286I | GDGCHC | 2 cut(s) | 235, 1271 |
| Bsp1407I | TGTACA | 1 cut(s) | 2842 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1270, 1704 |
| BspACI | CCGC | 3 cut(s) | 229, 658, 2591 |
| BspANI | GGCC | 2 cut(s) | 2998, 3152 |
| BspFNI | CGCG | 1 cut(s) | 229 |
| BspHI | TCATGA | 2 cut(s) | 573, 2728 |
| BspLI | GGNNCC | 6 cut(s) | 234, 855, 977, 1188, 2720, 2792 |
| BspMAI | CTGCAG | 1 cut(s) | 793 |
| BspT107I | GGYRCC | 2 cut(s) | 232, 2718 |
| BspTNI | GGTCTC | 1 cut(s) | 382 |
| BsrDI | GCAATG | 3 cut(s) | 369, 1485, 2646 |
| BsrGI | TGTACA | 1 cut(s) | 2842 |
| BsrI | ACTGG | 7 cut(s) | 871, 994, 1404, 1680, 1891, 2254, 2999 |
| BssECI | CCNNGG | 4 cut(s) | 267, 860, 2287, 3167 |
| BssNI | GRCGYC | 1 cut(s) | 2719 |
| BssT1I | CCWWGG | 3 cut(s) | 267, 2287, 3167 |
| Bst2UI | CCWGG | 3 cut(s) | 113, 861, 1746 |
| Bst6I | CTCTTC | 2 cut(s) | 2202, 2292 |
| BstACI | GRCGYC | 1 cut(s) | 2719 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1315 |
| BstAUI | TGTACA | 1 cut(s) | 2842 |
| BstBAI | YACGTR | 2 cut(s) | 596, 2393 |
| BstC8I | GCNNGC | 4 cut(s) | 231, 1615, 3087, 3150 |
| BstF5I | GGATG | 5 cut(s) | 1400, 1903, 2308, 2686, 3125 |
| BstFNI | CGCG | 1 cut(s) | 229 |
| BstH2I | RGCGCY | 1 cut(s) | 2722 |
| BstHHI | GCGC | 1 cut(s) | 2721 |
| BstMAI | GTCTC | 7 cut(s) | 125, 313, 382, 1318, 1843, 2529, 3071 |
| BstMCI | CGRYCG | 1 cut(s) | 144 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1315, 1820 |
| BstNI | CCWGG | 3 cut(s) | 113, 861, 1746 |
| BstNSI | RCATGY | 3 cut(s) | 936, 1760, 2843 |
| BstSCI | CCNGG | 3 cut(s) | 111, 859, 1744 |
| BstSFI | CTRYAG | 1 cut(s) | 789 |
| BstSLI | GKGCMC | 1 cut(s) | 235 |
| BstUI | CGCG | 1 cut(s) | 229 |
| BstV1I | GCAGC | 4 cut(s) | 713, 775, 1687, 2936 |
| BstV2I | GAAGAC | 1 cut(s) | 1742 |
| BstX2I | RGATCY | 5 cut(s) | 416, 1186, 2018, 2551, 2790 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2994 |
| BstYI | RGATCY | 5 cut(s) | 416, 1186, 2018, 2551, 2790 |
| BsuRI | GGCC | 2 cut(s) | 2998, 3152 |
| BtsCI | GGATG | 5 cut(s) | 1400, 1903, 2308, 2686, 3125 |
| BtsI | GCAGTG | 1 cut(s) | 3028 |
| Cac8I | GCNNGC | 4 cut(s) | 231, 1615, 3087, 3150 |
| CaiI | CAGNNNCTG | 1 cut(s) | 866 |
| CciI | TCATGA | 2 cut(s) | 573, 2728 |
| CfoI | GCGC | 1 cut(s) | 2721 |
| Cfr13I | GGNCC | 3 cut(s) | 854, 1510, 1961 |
| CseI | GACGC | 1 cut(s) | 2891 |
| CsiI | ACCWGGT | 2 cut(s) | 111, 1744 |
| Csp6I | GTAC | 7 cut(s) | 593, 1330, 1363, 1629, 2229, 2384, 2843 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 931, 966, 3118, 3153 |
| CviQI | GTAC | 7 cut(s) | 593, 1330, 1363, 1629, 2229, 2384, 2843 |
| DinI | GGCGCC | 1 cut(s) | 2720 |
| DraIII | CACNNNGTG | 2 cut(s) | 759, 1547 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2757 |
| EaeI | YGGCCR | 1 cut(s) | 2996 |
| Eam1104I | CTCTTC | 2 cut(s) | 2202, 2292 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2757 |
| EarI | CTCTTC | 2 cut(s) | 2202, 2292 |
| Ecl136II | GAGCTC | 1 cut(s) | 1269 |
| Eco130I | CCWWGG | 3 cut(s) | 267, 2287, 3167 |
| Eco24I | GRGCYC | 1 cut(s) | 1271 |
| Eco31I | GGTCTC | 1 cut(s) | 382 |
| Eco47I | GGWCC | 3 cut(s) | 854, 1510, 1961 |
| Eco53kI | GAGCTC | 1 cut(s) | 1269 |
| Eco57I | CTGAAG | 1 cut(s) | 3059 |
| Eco72I | CACGTG | 1 cut(s) | 2393 |
| EcoICRI | GAGCTC | 1 cut(s) | 1269 |
| EcoO109I | RGGNCCY | 1 cut(s) | 854 |
| EcoRI | GAATTC | 3 cut(s) | 691, 2135, 2830 |
| EcoRII | CCWGG | 3 cut(s) | 111, 859, 1744 |
| EcoT14I | CCWWGG | 3 cut(s) | 267, 2287, 3167 |
| EcoT22I | ATGCAT | 2 cut(s) | 1905, 3127 |
| EcoT38I | GRGCYC | 1 cut(s) | 1271 |
| EgeI | GGCGCC | 1 cut(s) | 2720 |
| EheI | GGCGCC | 1 cut(s) | 2720 |
| ErhI | CCWWGG | 3 cut(s) | 267, 2287, 3167 |
| Esp3I | CGTCTC | 1 cut(s) | 125 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2606, 2638 |
| FaqI | GGGAC | 4 cut(s) | 205, 877, 2987, 3092 |
| FauI | CCCGC | 2 cut(s) | 222, 651 |
| FauNDI | CATATG | 1 cut(s) | 346 |
| FbaI | TGATCA | 1 cut(s) | 1099 |
| Fnu4HI | GCNGC | 4 cut(s) | 727, 789, 1701, 2950 |
| FokI | GGATG | 5 cut(s) | 1387, 1890, 2315, 2693, 3112 |
| FriOI | GRGCYC | 1 cut(s) | 1271 |
| Fsp4HI | GCNGC | 4 cut(s) | 727, 789, 1701, 2950 |
| FspBI | CTAG | 4 cut(s) | 744, 1160, 1491, 1853 |
| GlaI | GCGC | 1 cut(s) | 2720 |
| GluI | GCNGC | 4 cut(s) | 727, 789, 1701, 2950 |
| GsuI | CTGGAG | 1 cut(s) | 843 |
| HaeII | RGCGCY | 1 cut(s) | 2722 |
| HaeIII | GGCC | 2 cut(s) | 2998, 3152 |
| HapII | CCGG | 2 cut(s) | 1143, 3156 |
| HgaI | GACGC | 1 cut(s) | 2891 |
| HhaI | GCGC | 1 cut(s) | 2721 |
| Hin1I | GRCGYC | 1 cut(s) | 2719 |
| Hin6I | GCGC | 1 cut(s) | 2719 |
| HinP1I | GCGC | 1 cut(s) | 2719 |
| HincII | GTYRAC | 1 cut(s) | 991 |
| HindII | GTYRAC | 1 cut(s) | 991 |
| HindIII | AAGCTT | 3 cut(s) | 476, 1837, 2702 |
| HpaI | GTTAAC | 1 cut(s) | 991 |
| HpaII | CCGG | 2 cut(s) | 1143, 3156 |
| HphI | GGTGA | 6 cut(s) | 374, 818, 1271, 2169, 2306, 2746 |
| Hpy166II | GTNNAC | 5 cut(s) | 568, 991, 2069, 2620, 2815 |
| Hpy8I | GTNNAC | 5 cut(s) | 568, 991, 2069, 2620, 2815 |
| Hpy99I | CGWCG | 1 cut(s) | 2679 |
| HpyCH4IV | ACGT | 6 cut(s) | 134, 591, 595, 1301, 2392, 2562 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1315, 1820 |
| HpySE526I | ACGT | 6 cut(s) | 134, 591, 595, 1301, 2392, 2562 |
| Hsp92I | GRCGYC | 1 cut(s) | 2719 |
| HspAI | GCGC | 1 cut(s) | 2719 |
| KasI | GGCGCC | 1 cut(s) | 2718 |
| Ksp22I | TGATCA | 1 cut(s) | 1099 |
| KspAI | GTTAAC | 1 cut(s) | 991 |
| LmnI | GCTCC | 4 cut(s) | 45, 341, 981, 1266 |
| Lsp1109I | GCAGC | 4 cut(s) | 713, 775, 1687, 2936 |
| LweI | GCATC | 8 cut(s) | 500, 1223, 1643, 1912, 2464, 2546, 3113, 3134 |
| MabI | ACCWGGT | 2 cut(s) | 111, 1744 |
| MaeI | CTAG | 4 cut(s) | 744, 1160, 1491, 1853 |
| MaeII | ACGT | 6 cut(s) | 134, 591, 595, 1301, 2392, 2562 |
| MaeIII | GTNAC | 9 cut(s) | 115, 145, 152, 891, 964, 1412, 1539, 2444, 2924 |
| MfeI | CAATTG | 5 cut(s) | 882, 1505, 2202, 2346, 2488 |
| MflI | RGATCY | 5 cut(s) | 416, 1186, 2018, 2551, 2790 |
| MhlI | GDGCHC | 2 cut(s) | 235, 1271 |
| MlsI | TGGCCA | 1 cut(s) | 2998 |
| MluNI | TGGCCA | 1 cut(s) | 2998 |
| Mly113I | GGCGCC | 1 cut(s) | 2719 |
| MlyI | GAGTC | 2 cut(s) | 527, 1172 |
| MmeI | TCCRAC | 4 cut(s) | 16, 1127, 1586, 3153 |
| Mox20I | TGGCCA | 1 cut(s) | 2998 |
| Mph1103I | ATGCAT | 2 cut(s) | 1905, 3127 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1500, 1994, 2704 |
| MscI | TGGCCA | 1 cut(s) | 2998 |
| MseI | TTAA | 9 cut(s) | 537, 645, 990, 1619, 1710, 1800, 2637, 2658, 2943 |
| MslI | CAYNNNNRTG | 3 cut(s) | 578, 931, 2880 |
| Msp20I | TGGCCA | 1 cut(s) | 2998 |
| MspA1I | CMGCKG | 4 cut(s) | 726, 2593, 2764, 3089 |
| MspI | CCGG | 2 cut(s) | 1143, 3156 |
| MspR9I | CCNGG | 3 cut(s) | 113, 861, 1746 |
| MunI | CAATTG | 5 cut(s) | 882, 1505, 2202, 2346, 2488 |
| Mva1269I | GAATGC | 2 cut(s) | 1825, 1905 |
| MvaI | CCWGG | 3 cut(s) | 113, 861, 1746 |
| MvnI | CGCG | 1 cut(s) | 229 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1315, 1820 |
| NarI | GGCGCC | 1 cut(s) | 2719 |
| NdeI | CATATG | 1 cut(s) | 346 |
| NlaIV | GGNNCC | 6 cut(s) | 234, 855, 977, 1188, 2720, 2792 |
| NmuCI | GTSAC | 4 cut(s) | 891, 964, 1412, 1539 |
| NsiI | ATGCAT | 2 cut(s) | 1905, 3127 |
| NspI | RCATGY | 3 cut(s) | 936, 1760, 2843 |
| PagI | TCATGA | 2 cut(s) | 573, 2728 |
| PciI | ACATGT | 1 cut(s) | 2839 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 146 |
| PctI | GAATGC | 2 cut(s) | 1825, 1905 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1500, 1994, 2704 |
| Pfl23II | CGTACG | 1 cut(s) | 592 |
| PflFI | GACNNNGTC | 1 cut(s) | 2434 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 359, 866, 1000 |
| PkrI | GCNGC | 4 cut(s) | 728, 790, 1702, 2951 |
| PleI | GAGTC | 2 cut(s) | 526, 1171 |
| PluTI | GGCGCC | 1 cut(s) | 2722 |
| PmaCI | CACGTG | 1 cut(s) | 2393 |
| PmlI | CACGTG | 1 cut(s) | 2393 |
| PpsI | GAGTC | 2 cut(s) | 526, 1171 |
| Ppu21I | YACGTR | 2 cut(s) | 596, 2393 |
| PpuMI | RGGWCCY | 1 cut(s) | 854 |
| PscI | ACATGT | 1 cut(s) | 2839 |
| PsiI | TTATAA | 1 cut(s) | 1242 |
| Psp124BI | GAGCTC | 1 cut(s) | 1271 |
| Psp5II | RGGWCCY | 1 cut(s) | 854 |
| Psp6I | CCWGG | 3 cut(s) | 111, 859, 1744 |
| PspCI | CACGTG | 1 cut(s) | 2393 |
| PspGI | CCWGG | 3 cut(s) | 111, 859, 1744 |
| PspLI | CGTACG | 1 cut(s) | 592 |
| PspN4I | GGNNCC | 6 cut(s) | 234, 855, 977, 1188, 2720, 2792 |
| PspPI | GGNCC | 3 cut(s) | 854, 1510, 1961 |
| PspPPI | RGGWCCY | 1 cut(s) | 854 |
| PstI | CTGCAG | 1 cut(s) | 793 |
| PstNI | CAGNNNCTG | 1 cut(s) | 866 |
| PsuI | RGATCY | 5 cut(s) | 416, 1186, 2018, 2551, 2790 |
| PsyI | GACNNNGTC | 1 cut(s) | 2434 |
| PvuII | CAGCTG | 3 cut(s) | 726, 2764, 3089 |
| RsaI | GTAC | 7 cut(s) | 594, 1331, 1364, 1630, 2230, 2385, 2844 |
| RsaNI | GTAC | 7 cut(s) | 593, 1330, 1363, 1629, 2229, 2384, 2843 |
| RseI | CAYNNNNRTG | 3 cut(s) | 578, 931, 2880 |
| SacI | GAGCTC | 1 cut(s) | 1271 |
| SaqAI | TTAA | 9 cut(s) | 537, 645, 990, 1619, 1710, 1800, 2637, 2658, 2943 |
| SatI | GCNGC | 4 cut(s) | 727, 789, 1701, 2950 |
| Sau96I | GGNCC | 3 cut(s) | 854, 1510, 1961 |
| ScaI | AGTACT | 1 cut(s) | 1331 |
| SchI | GAGTC | 2 cut(s) | 527, 1172 |
| ScrFI | CCNGG | 3 cut(s) | 113, 861, 1746 |
| SduI | GDGCHC | 2 cut(s) | 235, 1271 |
| SexAI | ACCWGGT | 2 cut(s) | 111, 1744 |
| SfaNI | GCATC | 8 cut(s) | 500, 1223, 1643, 1912, 2464, 2546, 3113, 3134 |
| SfcI | CTRYAG | 1 cut(s) | 789 |
| SfoI | GGCGCC | 1 cut(s) | 2720 |
| SinI | GGWCC | 3 cut(s) | 854, 1510, 1961 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 578, 931, 2880 |
| SmlI | CTYRAG | 6 cut(s) | 182, 208, 1085, 1181, 2000, 2966 |
| SmoI | CTYRAG | 6 cut(s) | 182, 208, 1085, 1181, 2000, 2966 |
| SpeI | ACTAGT | 1 cut(s) | 1852 |
| SsiI | CCGC | 3 cut(s) | 229, 658, 2591 |
| SspDI | GGCGCC | 1 cut(s) | 2718 |
| SspI | AATATT | 3 cut(s) | 949, 1623, 3008 |
| SspMI | CTAG | 4 cut(s) | 744, 1160, 1491, 1853 |
| SstI | GAGCTC | 1 cut(s) | 1271 |
| StyD4I | CCNGG | 3 cut(s) | 111, 859, 1744 |
| StyI | CCWWGG | 3 cut(s) | 267, 2287, 3167 |
| TaiI | ACGT | 6 cut(s) | 137, 594, 598, 1304, 2395, 2565 |
| TaqI | TCGA | 6 cut(s) | 140, 1753, 1845, 1897, 2143, 2779 |
| TaqII | GACCGA | 1 cut(s) | 2259 |
| TatI | WGTACW | 6 cut(s) | 1329, 1362, 1628, 2228, 2383, 2842 |
| Tru1I | TTAA | 9 cut(s) | 537, 645, 990, 1619, 1710, 1800, 2637, 2658, 2943 |
| Tru9I | TTAA | 9 cut(s) | 537, 645, 990, 1619, 1710, 1800, 2637, 2658, 2943 |
| TseFI | GTSAC | 4 cut(s) | 891, 964, 1412, 1539 |
| TseI | GCWGC | 4 cut(s) | 726, 788, 1700, 2949 |
| Tsp45I | GTSAC | 4 cut(s) | 891, 964, 1412, 1539 |
| TspGWI | ACGGA | 2 cut(s) | 477, 1673 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2434 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 359, 866, 1000 |
| VpaK11BI | GGWCC | 3 cut(s) | 854, 1510, 1961 |
| XceI | RCATGY | 3 cut(s) | 936, 1760, 2843 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1143 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1500, 1994, 2704 |
| XspI | CTAG | 4 cut(s) | 744, 1160, 1491, 1853 |
| ZrmI | AGTACT | 1 cut(s) | 1331 |
| Zsp2I | ATGCAT | 2 cut(s) | 1905, 3127 |