RLG00000030376

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000279
Physical Location & Seq
Forward (+)
60320900 .. 60321542
643 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030376

Sequence Viewer

Length: 348 bp
ATGGTGGAGGTTGCTGTAGTCTCTGGGATGGTAGCAAGCCTTTATAAAGAATTCATTGGAACAAAGAAGAAAGTTAGTGGTGAAGAAGATGTGATAATTATGTCTACTGTCCGATGTAATGGGAATGGGTCAGTTGGTTTCTTGTCGAACCAGCAAAGAGCAATTATTTCCTTAACACATGCAAGGTATTGCCTTTGGATATTGGGGAATGCGTCAACTTTGATTGCTAGTGACTCTGTTTGGAAGAAGCTAGTCCTTGATGCCAAGAAACGGAACTGTTTTTATAATGCTGATGAAGACAGCAACTTGGCTCAGGCTATTACAGCTGCCCTGCTGGAGCTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

116

Amino Acids

12.53

Weight (kDa)

6.56

Isoelectric Point (pI)

27.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_12 PF13087 24 - 71 1.9e-11 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 45, 285
AccI GTMKAC 1 cut(s) 104
AcsI RAATTY 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 270
AluBI AGCT 3 cut(s) 250, 326, 340
AluI AGCT 3 cut(s) 250, 326, 340
Alw26I GTCTC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 2 cut(s) 228, 251
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
BmsI GCATC 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 303
Bpu10I CCTNAGC 1 cut(s) 312
Bsc4I CCNNNNNNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 313
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 25
BsmI GAATGC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 325
Bst4CI ACNGT 2 cut(s) 109, 278
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 37
CseI GACGC 1 cut(s) 201
CviAII CATG 1 cut(s) 179
CviJI RGCY 6 cut(s) 39, 250, 311, 317, 326, 340
CviKI_1 RGCY 6 cut(s) 39, 250, 311, 317, 326, 340
DdeI CTNAG 1 cut(s) 312
EcoRI GAATTC 1 cut(s) 50
FaeI CATG 1 cut(s) 182
FaiI YATR 4 cut(s) 45, 101, 180, 285
FatI CATG 1 cut(s) 178
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 1 cut(s) 327
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 327
FspBI CTAG 2 cut(s) 228, 251
GluI GCNGC 1 cut(s) 327
HgaI GACGC 1 cut(s) 201
Hin1II CATG 1 cut(s) 182
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 1 cut(s) 233
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 105, 216
Hpy188I TCNGA 1 cut(s) 113
Hpy8I GTNNAC 2 cut(s) 105, 216
HpyCH4III ACNGT 2 cut(s) 109, 278
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 1 cut(s) 312
Hsp92II CATG 1 cut(s) 182
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 5 cut(s) 9, 164, 299, 320, 344
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 1 cut(s) 250
MaeI CTAG 2 cut(s) 228, 251
MaeIII GTNAC 1 cut(s) 230
MboII GAAGA 5 cut(s) 79, 95, 98, 256, 308
MluCI AATT 3 cut(s) 50, 96, 162
MlyI GAGTC 1 cut(s) 227
MseI TTAA 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 326
Mva1269I GAATGC 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 323
NlaIII CATG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 182
PctI GAATGC 1 cut(s) 214
PkrI GCNGC 1 cut(s) 328
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PsiI TTATAA 2 cut(s) 45, 285
PvuII CAGCTG 1 cut(s) 326
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 1 cut(s) 327
SchI GAGTC 1 cut(s) 227
SetI ASST 5 cut(s) 12, 188, 252, 328, 342
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 15
Sse9I AATT 3 cut(s) 50, 96, 162
SspMI CTAG 2 cut(s) 228, 251
TaaI ACNGT 2 cut(s) 109, 278
TaqI TCGA 1 cut(s) 146
TasI AATT 3 cut(s) 50, 96, 162
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 43, 309
TspGWI ACGGA 1 cut(s) 286
XapI RAATTY 1 cut(s) 50
XceI RCATGY 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 104
XspI CTAG 2 cut(s) 228, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.