pycom03g14970
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
16354085 .. 16361172
7088 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGGATTTACGCCATCTAAATCATACAACAAACCCTAACTATCATCTTCTCTTCTCTGCCGCTGTGAACTTCTTCATCCTTGCATCTCCCCTTCGCAACCTTCCTCCTCATCCTCTTATCCGTGAACTTCAGCTCTGCATCTCCATTCCAGTTCTTCGATCTTCCCAATACTACATCTGTAACCAAAGATCTGCCTCTGTTTATCTGATTCCACTCCCCCTATTGAGCAGTACTGCATTCAGAGCTCTTTGTTTTCATTCTTCATCACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

91

Amino Acids

10.22

Weight (kDa)

9.41

Isoelectric Point (pI)

59.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028485)

Species Orthologous Gene IDs
malus_domestica MD03G1132000.v1.1
pyrus_communis pycom03g14970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 1 cut(s) 232
AluBI AGCT 2 cut(s) 133, 245
AluI AGCT 2 cut(s) 133, 245
Alw21I GWGCWC 1 cut(s) 247
Asp700I GAANNNNTTC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 258
BanII GRGCYC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 247
BccI CCATC 1 cut(s) 21
BglII AGATCT 1 cut(s) 188
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmcAI AGTACT 1 cut(s) 232
BmsI GCATC 2 cut(s) 92, 147
Bse1I ACTGG 1 cut(s) 149
BseGI GGATG 2 cut(s) 75, 109
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 247
BsmI GAATGC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 2 cut(s) 158, 188
BspACI CCGC 1 cut(s) 60
BsrI ACTGG 1 cut(s) 149
BssMI GATC 2 cut(s) 158, 188
Bst4CI ACNGT 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 56
BstF5I GGATG 2 cut(s) 75, 109
BstKTI GATC 2 cut(s) 161, 191
BstMBI GATC 2 cut(s) 158, 188
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
BtsCI GGATG 2 cut(s) 75, 109
Csp6I GTAC 1 cut(s) 231
CviJI RGCY 2 cut(s) 133, 245
CviKI_1 RGCY 2 cut(s) 133, 245
CviQI GTAC 1 cut(s) 231
DpnI GATC 2 cut(s) 160, 190
DpnII GATC 2 cut(s) 158, 188
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 247
FaiI YATR 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 2 cut(s) 62, 96
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 60
HinfI GANTC 1 cut(s) 208
HphI GGTGA 1 cut(s) 258
Hpy166II GTNNAC 2 cut(s) 67, 125
Hpy188I TCNGA 2 cut(s) 207, 242
Hpy8I GTNNAC 2 cut(s) 67, 125
HpyAV CCTTC 2 cut(s) 101, 110
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 83, 138, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Kzo9I GATC 2 cut(s) 158, 188
LpnPI CCDG 1 cut(s) 162
LweI GCATC 2 cut(s) 92, 147
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 160, 190
MboI GATC 2 cut(s) 158, 188
MboII GAAGA 6 cut(s) 38, 43, 64, 146, 153, 252
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 1 cut(s) 247
MnlI CCTC 4 cut(s) 114, 117, 123, 205
MroXI GAANNNNTTC 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 268
MspA1I CMGCKG 1 cut(s) 62
Mva1269I GAATGC 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 2 cut(s) 158, 188
PctI GAATGC 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 247
PsuI RGATCY 1 cut(s) 188
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 268
SacI GAGCTC 1 cut(s) 247
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 158, 188
ScaI AGTACT 1 cut(s) 232
SduI GDGCHC 1 cut(s) 247
SetI ASST 3 cut(s) 102, 135, 247
SfaNI GCATC 2 cut(s) 92, 147
SgeI CNNG 3 cut(s) 92, 134, 161
SmiMI CAYNNNNRTG 1 cut(s) 268
SsiI CCGC 1 cut(s) 60
SstI GAGCTC 1 cut(s) 247
TaaI ACNGT 1 cut(s) 270
TaqI TCGA 1 cut(s) 157
TatI WGTACW 1 cut(s) 230
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 64, 245, 252
TspGWI ACGGA 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 71
ZrmI AGTACT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.