Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0029238

Physical Location & Seq

Genomic Coordinates Forward (+)

17111494 .. 17113131

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGTGGAGGGACGCCGGAATTCCTGCTGATTCTTTCTATGAAGTCCGCCCTGAGTGTACAGATGTGCCCAAAACCCGCTTCAAGATCAAGGCAGGTAAAACTCTAAGTGTAAGGAAATGGCGGGCTGCATTTAGTCCTGAAGGCCAACTGGATATAGGCAAGACTTTAAGTCGAATTTATCGCGGGGGAATTCATCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTAGGTTGTTATCGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

83

Amino Acids

9.4

Weight (kDa)

9.75

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029238)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g15860
rosa_multiflora	Rmu_co8431587.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
AccII	CGCG	1 cut(s)	183
AciI	CCGC	4 cut(s)	46, 76, 121, 183
AclWI	GGATC	1 cut(s)	237
AcsI	RAATTY	4 cut(s)	18, 174, 189, 221
AcuI	CTGAAG	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	82
AhdI	GACNNNNNGTC	1 cut(s)	168
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AlwI	GGATC	1 cut(s)	237
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	4 cut(s)	18, 174, 189, 221
BaeGI	GKGCMC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmeRI	GACNNNNNGTC	1 cut(s)	168
Bsa29I	ATCGAT	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	153
BseCI	ATCGAT	1 cut(s)	241
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	144
BshVI	ATCGAT	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp1407I	TGTACA	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	84, 242
BspACI	CCGC	4 cut(s)	46, 76, 121, 183
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	43
BspDI	ATCGAT	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	183
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	153
BssMI	GATC	2 cut(s)	84, 242
BssNI	GRCGYC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	12
BstAUI	TGTACA	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	51, 104
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	2 cut(s)	87, 245
BstMBI	GATC	2 cut(s)	84, 242
BstSLI	GKGCMC	1 cut(s)	69
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	112
Bsu15I	ATCGAT	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	144
BsuTUI	ATCGAT	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	123
ClaI	ATCGAT	1 cut(s)	241
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	57
CviJI	RGCY	2 cut(s)	125, 144
CviKI_1	RGCY	2 cut(s)	125, 144
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	2 cut(s)	51, 104
DpnI	GATC	2 cut(s)	86, 244
DpnII	GATC	2 cut(s)	84, 242
DriI	GACNNNNNGTC	1 cut(s)	168
Eam1105I	GACNNNNNGTC	1 cut(s)	168
EciI	GGCGGA	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	159
EcoRI	GAATTC	2 cut(s)	18, 189
FaiI	YATR	2 cut(s)	39, 155
FaqI	GGGAC	1 cut(s)	23
FauI	CCCGC	3 cut(s)	83, 114, 176
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	1 cut(s)	15
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188III	TCNNGA	2 cut(s)	82, 137
Hpy8I	GTNNAC	1 cut(s)	57
HpyAV	CCTTC	1 cut(s)	134
HpyCH4V	TGCA	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	51, 104
Hsp92I	GRCGYC	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	84, 242
LpnPI	CCDG	6 cut(s)	28, 36, 63, 78, 134, 150
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	230
MalI	GATC	2 cut(s)	86, 244
MboI	GATC	2 cut(s)	84, 242
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	5 cut(s)	18, 174, 189, 201, 221
MnlI	CCTC	1 cut(s)	200
MseI	TTAA	1 cut(s)	167
MspI	CCGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	183
NdeII	GATC	2 cut(s)	84, 242
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	127
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	84, 242
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	2 cut(s)	97, 235
Sse9I	AATT	5 cut(s)	18, 174, 189, 201, 221
SsiI	CCGC	4 cut(s)	46, 76, 121, 183
SspMI	CTAG	1 cut(s)	230
TaqI	TCGA	2 cut(s)	172, 241
TasI	AATT	5 cut(s)	18, 174, 189, 201, 221
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	54, 182
XapI	RAATTY	4 cut(s)	18, 174, 189, 221
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.