pycom03g15960

NDR1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
17177851 .. 17180394
2544 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1794 bp
ATGTCAAGGCTGATTTGGTATCCTATTAAAAAAATTCATCATTTCTCAAAACATTTCTCAGAAACATATCTTGAATTTTTTTTTTTTTTAAGACTAAAAAACTTAAATAAATCAAAGAGAGAGAAAGAAGAAAGAGGGTCAAATGAGATAAAGAGGAGGAGAGAGAAAGAGAGAGAGATAGAAAGAAGGAAGAAGAGACAAAATGAAGAAAGTAGATTAGAGAAGAGAGAAAGAAGAAAAGAAAGATTCAAAGTAAGAAGGGAGGAGGGAGAACATAAACGAGTGAGTTTTAAAAACCCTAAAAACTCATTTTTGATGTTTTTAGAGAATATAGTCATACCAAATAAGTTTTTAAATCAAATAGAGTACCAAACATTTACCCAAGTTATCCAAGATTTAATTATCACTTTATTGAAGTTTCATATAAAATATAAAAATGTACAAAAAACCCTTACACACAACTCCAAGGAAACTGCTAAGCTTTTACCATCAGCGACTCAAGCATTCAAGTCCATGCGCAAATTGATTGCTAAGAAGTTGTTTCTCTCAATTAACTCGTTTATGCGACTGATACAAAAATGTATACATCGGAATATCACAAATTCTAGCGCACTAGTCCTACAATGTATTGGCGAGTATATACCTGACCAAAGACTTTTAAAAAGATTAATTAAAGACCAAACAATACCAAAGACCTTAACATATTTTTTCCAATCATTTCTCTCTCCCTCTAACCGTCGTTTCATTTCTCTCTCTCTAACCACAAACATGGCGGATCAATCAGCCGGGTGCTGCAGCTGCTGCTTCAGCTTAATATTCACTCTCGGCCTCACAGCCCTCTTCATGTGGCTGAGCGTCGACACCAAAAACTCCACCCTCTTCTTTTATAGGACGCCGTCAACCACGCCTTCCGGCTGCTGCCCAACACCCCCGCCCGTAGCTAACTTCTGCTGTGCCCCAGTTCTACCAGGTATAATTTATAAGCATATGTGTAGACGTTTAGTTAAGACTGACACAGAATGGACAGGTGAGTATAGGGATTGTAGATCAAATGTCCAAGTAATAAGCATACATGTGGTGATTGAACTAGCTTCGATCATGAAAGGAAAATATTTCCATATTTTCGTGTTAGGTTCCATATTTTGCTTCTTGTACTCCAAGAGCCTTAATATTGAAACCCTGTGTATACATATTTGTTTCTCTCGTCTTACTCGGCTATCACTAGTACAAAAACATGTTTGCGCGACGCAGCTAAATGCGTCGCGCAAAGTATGTTTGCGTGACGCTAAACAAAAAACGTCACGCAAAGTGCTGCAAGTTTTTGGCACTAAACCAAGGCTACATGAGTCGCGCACGCAAAACAGTTTTGCGCACGCAAAACATTTTTGCGTGACGTATGTAGCGTCACGCAAAACAGTTTTGCGCGACTCCTGTAGCCCTGCGTCACTCAACAACTTTTTTCTCCTTTACTTCATCAGTTTGGGTGGTAGAAACTGCAAACTAATTGACTTTTTTCTCAATGCTAAGACAATAGGTTTTAGTTCAACAATGAGCGGGTTGATTTTTGTGAGCATATCTTTTTCTCCGTTAAATCGTTATTTTTCATTTATAACCGTCGAAAAGTGTTTGTCGTGTTACTTGATCTCTAAATGTTTTTTTTTCCTATTTTTGGCGTATGCGATCTCGAAGCATATGCAAACAAGTTTGACGGTTGGATCGTTGAAACTAGTTTCGTACAATGTGTTTCCCATCAAAATGGTTGATTTATTAATACTTTCATTAAGTATAACATAA

Protein Analysis

598

Amino Acids

69.56

Weight (kDa)

9.97

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028727)

Species Orthologous Gene IDs
malus_domestica MD12G1175500.v1.1
pyrus_communis pycom03g15960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 981, 1610
Acc16I TGCGCA 2 cut(s) 518, 1371
AccBSI CCGCTC 1 cut(s) 1554
AccI GTMKAC 4 cut(s) 583, 858, 994, 1186
AccII CGCG 4 cut(s) 1244, 1264, 1351, 1425
AciI CCGC 3 cut(s) 773, 932, 1554
AclWI GGATC 2 cut(s) 783, 1723
AcsI RAATTY 3 cut(s) 33, 74, 601
AcuI CTGAAG 1 cut(s) 790
AcyI GRCGYC 1 cut(s) 893
AfaI GTAC 5 cut(s) 368, 441, 1154, 1227, 1736
AfiI CCNNNNNNNGG 1 cut(s) 1669
AflIII ACRYGT 2 cut(s) 1072, 1234
AgsI TTSAA 8 cut(s) 74, 250, 415, 508, 1085, 1175, 1545, 1723
AhlI ACTAGT 3 cut(s) 613, 1222, 1726
AjnI CCWGG 1 cut(s) 967
AluBI AGCT 6 cut(s) 481, 798, 810, 941, 1091, 1252
AluI AGCT 6 cut(s) 481, 798, 810, 941, 1091, 1252
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 2 cut(s) 783, 1723
AlwNI CAGNNNCTG 1 cut(s) 801
AoxI GGCC 1 cut(s) 826
ApeKI GCWGC 8 cut(s) 792, 795, 798, 801, 915, 918, 1249, 1312
ApoI RAATTY 3 cut(s) 33, 74, 601
AseI ATTAAT 2 cut(s) 668, 1769
AspLEI GCGC 7 cut(s) 519, 611, 1244, 1266, 1353, 1372, 1425
AsuC2I CCSGG 1 cut(s) 787
AsuHPI GGTGA 2 cut(s) 1040, 1090
BaeGI GKGCMC 1 cut(s) 958
BbvI GCAGC 8 cut(s) 779, 785, 788, 807, 902, 905, 1261, 1299
BccI CCATC 2 cut(s) 496, 1757
BceAI ACGGC 1 cut(s) 880
BcgI CGANNNNNNTGC 2 cut(s) 1675, 1709
BciT130I CCWGG 1 cut(s) 969
BciVI GTATCC 1 cut(s) 30
BcnI CCSGG 1 cut(s) 787
BcoDI GTCTC 1 cut(s) 190
BcuI ACTAGT 3 cut(s) 613, 1222, 1726
BfaI CTAG 5 cut(s) 606, 614, 1088, 1223, 1727
BfmI CTRYAG 2 cut(s) 793, 1432
BfuI GTATCC 1 cut(s) 30
BisI GCNGC 8 cut(s) 793, 796, 799, 802, 916, 919, 1250, 1313
BlpI GCTNAGC 2 cut(s) 477, 851
BlsI GCNGC 8 cut(s) 794, 797, 800, 803, 917, 920, 1251, 1314
Bme1390I CCNGG 2 cut(s) 787, 969
BmiI GGNNCC 1 cut(s) 1135
BmrFI CCNGG 2 cut(s) 787, 969
BmrI ACTGGG 1 cut(s) 953
BmuI ACTGGG 1 cut(s) 953
Bpu1102I GCTNAGC 2 cut(s) 477, 851
BpuEI CTTGAG 1 cut(s) 483
BpuMI CCSGG 1 cut(s) 787
BsaHI GRCGYC 1 cut(s) 893
BsaJI CCNNGG 2 cut(s) 465, 1334
Bsc4I CCNNNNNNNGG 1 cut(s) 1669
Bse1I ACTGG 1 cut(s) 959
BseBI CCWGG 1 cut(s) 969
BseDI CCNNGG 2 cut(s) 465, 1334
BseLI CCNNNNNNNGG 1 cut(s) 1669
BseMII CTCAG 2 cut(s) 72, 842
BseNI ACTGG 1 cut(s) 959
BseRI GAGGAG 3 cut(s) 169, 172, 278
BseSI GKGCMC 1 cut(s) 958
BseXI GCAGC 8 cut(s) 779, 785, 788, 807, 902, 905, 1261, 1299
Bsh1236I CGCG 4 cut(s) 1244, 1264, 1351, 1425
BshFI GGCC 1 cut(s) 828
BsiSI CCGG 2 cut(s) 786, 912
BslI CCNNNNNNNGG 1 cut(s) 1669
BsmAI GTCTC 1 cut(s) 190
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 1 cut(s) 828
Bsp1286I GDGCHC 1 cut(s) 958
Bsp1407I TGTACA 1 cut(s) 439
Bsp143I GATC 6 cut(s) 775, 1046, 1095, 1641, 1680, 1715
Bsp1720I GCTNAGC 2 cut(s) 477, 851
BspACI CCGC 3 cut(s) 773, 932, 1554
BspANI GGCC 1 cut(s) 828
BspCNI CTCAG 2 cut(s) 71, 843
BspFNI CGCG 4 cut(s) 1244, 1264, 1351, 1425
BspHI TCATGA 1 cut(s) 1098
BspLI GGNNCC 1 cut(s) 1135
BspMAI CTGCAG 1 cut(s) 797
BspPI GGATC 2 cut(s) 783, 1723
BsrBI CCGCTC 1 cut(s) 1554
BsrGI TGTACA 1 cut(s) 439
BsrI ACTGG 1 cut(s) 959
BssECI CCNNGG 2 cut(s) 465, 1334
BssMI GATC 6 cut(s) 775, 1046, 1095, 1641, 1680, 1715
BssNAI GTATAC 2 cut(s) 584, 1187
BssNI GRCGYC 1 cut(s) 893
BssT1I CCWWGG 2 cut(s) 465, 1334
Bst1107I GTATAC 2 cut(s) 584, 1187
Bst2UI CCWGG 1 cut(s) 969
Bst4CI ACNGT 5 cut(s) 737, 1364, 1417, 1615, 1711
Bst6I CTCTTC 4 cut(s) 188, 218, 845, 884
BstACI GRCGYC 1 cut(s) 893
BstAPI GCANNNNNTGC 1 cut(s) 801
BstAUI TGTACA 1 cut(s) 439
BstC8I GCNNGC 2 cut(s) 1355, 1374
BstDEI CTNAG 5 cut(s) 58, 477, 531, 851, 1524
BstFNI CGCG 4 cut(s) 1244, 1264, 1351, 1425
BstHHI GCGC 7 cut(s) 519, 611, 1244, 1266, 1353, 1372, 1425
BstKTI GATC 6 cut(s) 778, 1049, 1098, 1644, 1683, 1718
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 6 cut(s) 775, 1046, 1095, 1641, 1680, 1715
BstMWI GCNNNNNNNGC 4 cut(s) 500, 798, 801, 807
BstNI CCWGG 1 cut(s) 969
BstNSI RCATGY 2 cut(s) 1076, 1238
BstSCI CCNGG 2 cut(s) 785, 967
BstSFI CTRYAG 2 cut(s) 793, 1432
BstSLI GKGCMC 1 cut(s) 958
BstUI CGCG 4 cut(s) 1244, 1264, 1351, 1425
BstV1I GCAGC 8 cut(s) 779, 785, 788, 807, 902, 905, 1261, 1299
BstXI CCANNNNNNTGG 2 cut(s) 769, 1756
BstZ17I GTATAC 2 cut(s) 584, 1187
BsuI GTATCC 1 cut(s) 30
BsuRI GGCC 1 cut(s) 828
Cac8I GCNNGC 2 cut(s) 1355, 1374
CaiI CAGNNNCTG 1 cut(s) 801
CciI TCATGA 1 cut(s) 1098
CfoI GCGC 7 cut(s) 519, 611, 1244, 1266, 1353, 1372, 1425
CseI GACGC 7 cut(s) 844, 901, 1248, 1255, 1292, 1392, 1431
CsiI ACCWGGT 1 cut(s) 967
Csp6I GTAC 5 cut(s) 367, 440, 1153, 1226, 1735
CviAII CATG 7 cut(s) 514, 769, 844, 1073, 1099, 1235, 1343
CviQI GTAC 5 cut(s) 367, 440, 1153, 1226, 1735
DdeI CTNAG 5 cut(s) 58, 477, 531, 851, 1524
DpnI GATC 6 cut(s) 777, 1048, 1097, 1643, 1682, 1717
DpnII GATC 6 cut(s) 775, 1046, 1095, 1641, 1680, 1715
DraI TTTAAA 3 cut(s) 292, 354, 660
Eam1104I CTCTTC 4 cut(s) 188, 218, 845, 884
EarI CTCTTC 4 cut(s) 188, 218, 845, 884
EciI GGCGGA 1 cut(s) 788
Eco130I CCWWGG 2 cut(s) 465, 1334
Eco57I CTGAAG 1 cut(s) 790
EcoRII CCWGG 1 cut(s) 967
EcoT14I CCWWGG 2 cut(s) 465, 1334
ErhI CCWWGG 2 cut(s) 465, 1334
FaeI CATG 7 cut(s) 517, 772, 847, 1076, 1102, 1238, 1346
FatI CATG 7 cut(s) 513, 768, 843, 1072, 1098, 1234, 1342
FauI CCCGC 2 cut(s) 939, 1547
FauNDI CATATG 2 cut(s) 987, 1692
FblI GTMKAC 4 cut(s) 583, 858, 994, 1186
Fnu4HI GCNGC 8 cut(s) 793, 796, 799, 802, 916, 919, 1250, 1313
Fsp4HI GCNGC 8 cut(s) 793, 796, 799, 802, 916, 919, 1250, 1313
FspBI CTAG 5 cut(s) 606, 614, 1088, 1223, 1727
FspI TGCGCA 2 cut(s) 518, 1371
GlaI GCGC 7 cut(s) 518, 610, 1243, 1265, 1352, 1371, 1424
GluI GCNGC 8 cut(s) 793, 796, 799, 802, 916, 919, 1250, 1313
HaeIII GGCC 1 cut(s) 828
HapII CCGG 2 cut(s) 786, 912
HgaI GACGC 7 cut(s) 844, 901, 1248, 1255, 1292, 1392, 1431
HhaI GCGC 7 cut(s) 519, 611, 1244, 1266, 1353, 1372, 1425
Hin1I GRCGYC 1 cut(s) 893
Hin1II CATG 7 cut(s) 517, 772, 847, 1076, 1102, 1238, 1346
Hin6I GCGC 7 cut(s) 517, 609, 1242, 1264, 1351, 1370, 1423
HinP1I GCGC 7 cut(s) 517, 609, 1242, 1264, 1351, 1370, 1423
HincII GTYRAC 2 cut(s) 859, 900
HindII GTYRAC 2 cut(s) 859, 900
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 4 cut(s) 246, 496, 1346, 1427
HpaII CCGG 2 cut(s) 786, 912
HphI GGTGA 2 cut(s) 1040, 1090
Hpy166II GTNNAC 5 cut(s) 584, 859, 900, 995, 1187
Hpy188I TCNGA 2 cut(s) 61, 591
Hpy188III TCNNGA 3 cut(s) 71, 1099, 1684
Hpy8I GTNNAC 5 cut(s) 584, 859, 900, 995, 1187
Hpy99I CGWCG 5 cut(s) 741, 860, 1249, 1264, 1619
HpyAV CCTTC 3 cut(s) 180, 252, 918
HpyCH4III ACNGT 5 cut(s) 737, 1364, 1417, 1615, 1711
HpyCH4IV ACGT 3 cut(s) 997, 1298, 1394
HpyCH4V TGCA 4 cut(s) 795, 1315, 1497, 1696
HpyF10VI GCNNNNNNNGC 4 cut(s) 500, 798, 801, 807
HpyF3I CTNAG 5 cut(s) 58, 477, 531, 851, 1524
HpySE526I ACGT 3 cut(s) 997, 1298, 1394
Hsp92I GRCGYC 1 cut(s) 893
Hsp92II CATG 7 cut(s) 517, 772, 847, 1076, 1102, 1238, 1346
HspAI GCGC 7 cut(s) 517, 609, 1242, 1264, 1351, 1370, 1423
Kzo9I GATC 6 cut(s) 775, 1046, 1095, 1641, 1680, 1715
Lsp1109I GCAGC 8 cut(s) 779, 785, 788, 807, 902, 905, 1261, 1299
MabI ACCWGGT 1 cut(s) 967
MaeI CTAG 5 cut(s) 606, 614, 1088, 1223, 1727
MaeII ACGT 3 cut(s) 997, 1298, 1394
MaeIII GTNAC 6 cut(s) 1280, 1299, 1390, 1404, 1443, 1634
MalI GATC 6 cut(s) 777, 1048, 1097, 1643, 1682, 1717
MbiI CCGCTC 1 cut(s) 1554
MboI GATC 6 cut(s) 775, 1046, 1095, 1641, 1680, 1715
MboII GAAGA 8 cut(s) 140, 202, 205, 218, 235, 246, 832, 871
MhlI GDGCHC 1 cut(s) 958
MluCI AATT 9 cut(s) 33, 74, 399, 521, 549, 601, 669, 975, 1503
MlyI GAGTC 3 cut(s) 490, 1355, 1421
MmeI TCCRAC 1 cut(s) 1693
MnlI CCTC 9 cut(s) 128, 147, 150, 256, 259, 739, 839, 848, 887
MslI CAYNNNNRTG 3 cut(s) 767, 1073, 1754
MspA1I CMGCKG 1 cut(s) 798
MspI CCGG 2 cut(s) 786, 912
MspR9I CCNGG 2 cut(s) 787, 969
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 1 cut(s) 969
MvnI CGCG 4 cut(s) 1244, 1264, 1351, 1425
MwoI GCNNNNNNNGC 4 cut(s) 500, 798, 801, 807
NciI CCSGG 1 cut(s) 787
NdeI CATATG 2 cut(s) 987, 1692
NdeII GATC 6 cut(s) 775, 1046, 1095, 1641, 1680, 1715
NlaIII CATG 7 cut(s) 517, 772, 847, 1076, 1102, 1238, 1346
NlaIV GGNNCC 1 cut(s) 1135
NmeAIII GCCGAG 2 cut(s) 804, 1192
NmuCI GTSAC 5 cut(s) 1280, 1299, 1390, 1404, 1443
NsbI TGCGCA 2 cut(s) 518, 1371
NspI RCATGY 2 cut(s) 1076, 1238
PacI TTAATTAA 1 cut(s) 672
PagI TCATGA 1 cut(s) 1098
PciI ACATGT 2 cut(s) 1072, 1234
PcsI WCGNNNNNNNCGW 2 cut(s) 1400, 1715
PctI GAATGC 1 cut(s) 503
PfeI GAWTC 1 cut(s) 246
PflFI GACNNNGTC 1 cut(s) 895
PkrI GCNGC 8 cut(s) 794, 797, 800, 803, 917, 920, 1251, 1314
PleI GAGTC 3 cut(s) 490, 1354, 1421
PpsI GAGTC 3 cut(s) 490, 1354, 1421
PscI ACATGT 2 cut(s) 1072, 1234
PshBI ATTAAT 2 cut(s) 668, 1769
PsiI TTATAA 2 cut(s) 981, 1610
Psp6I CCWGG 1 cut(s) 967
PspGI CCWGG 1 cut(s) 967
PspN4I GGNNCC 1 cut(s) 1135
PstI CTGCAG 1 cut(s) 797
PstNI CAGNNNCTG 1 cut(s) 801
PsyI GACNNNGTC 1 cut(s) 895
PvuII CAGCTG 1 cut(s) 798
RsaI GTAC 5 cut(s) 368, 441, 1154, 1227, 1736
RsaNI GTAC 5 cut(s) 367, 440, 1153, 1226, 1735
RseI CAYNNNNRTG 3 cut(s) 767, 1073, 1754
SalI GTCGAC 1 cut(s) 857
SatI GCNGC 8 cut(s) 793, 796, 799, 802, 916, 919, 1250, 1313
Sau3AI GATC 6 cut(s) 775, 1046, 1095, 1641, 1680, 1715
SchI GAGTC 3 cut(s) 490, 1355, 1421
ScrFI CCNGG 2 cut(s) 787, 969
SduI GDGCHC 1 cut(s) 958
SexAI ACCWGGT 1 cut(s) 967
SfcI CTRYAG 2 cut(s) 793, 1432
SmiMI CAYNNNNRTG 3 cut(s) 767, 1073, 1754
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
SpeI ACTAGT 3 cut(s) 613, 1222, 1726
Sse9I AATT 9 cut(s) 33, 74, 399, 521, 549, 601, 669, 975, 1503
SsiI CCGC 3 cut(s) 773, 932, 1554
SspI AATATT 3 cut(s) 816, 1112, 1171
SspMI CTAG 5 cut(s) 606, 614, 1088, 1223, 1727
StyD4I CCNGG 2 cut(s) 785, 967
StyI CCWWGG 2 cut(s) 465, 1334
TaaI ACNGT 5 cut(s) 737, 1364, 1417, 1615, 1711
TaiI ACGT 3 cut(s) 1000, 1301, 1397
TaqI TCGA 4 cut(s) 858, 1094, 1617, 1685
TasI AATT 9 cut(s) 33, 74, 399, 521, 549, 601, 669, 975, 1503
TatI WGTACW 3 cut(s) 439, 1152, 1225
TfiI GAWTC 1 cut(s) 246
TseFI GTSAC 5 cut(s) 1280, 1299, 1390, 1404, 1443
TseI GCWGC 8 cut(s) 792, 795, 798, 801, 915, 918, 1249, 1312
Tsp45I GTSAC 5 cut(s) 1280, 1299, 1390, 1404, 1443
TspDTI ATGAA 9 cut(s) 26, 219, 410, 733, 832, 1115, 1462, 1593, 1767
TspGWI ACGGA 1 cut(s) 1575
Tth111I GACNNNGTC 1 cut(s) 895
VspI ATTAAT 2 cut(s) 668, 1769
XapI RAATTY 3 cut(s) 33, 74, 601
XceI RCATGY 2 cut(s) 1076, 1238
XmiI GTMKAC 4 cut(s) 583, 858, 994, 1186
XspI CTAG 5 cut(s) 606, 614, 1088, 1223, 1727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.