Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0029240

Physical Location & Seq

Genomic Coordinates Forward (+)

17280783 .. 17283861

Gene Structure 3079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCAGCTTCACATATCTCCCAGCCTGAGGCATGTGACGGTGTTTCCGGGAAAAGGAGTGAGGGAATTCATCAAGGTGAAAGTTGGATTAAGGCGGCTTTCGTACCGGATGCTCTTCTACTCCATTCTGTTCTTCACTTTTCTTCTCAGGTTCGCGTTTGTGATGACTGCTGTGGACACCATTGATGGGGAAAGCAAGTGCTCCTCACTAGGTTGCTTGGGGAAAAGATTAGGGCCAAAAATATTGGGAAGAAGAGAATCAAGGGTCCCAGAAGTAATATACCAAATATTAGAAGAACCCATCGGCAAGCATGAATTACAAGGAACGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0047262 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

111

Amino Acids

12.57

Weight (kDa)

10.01

Isoelectric Point (pI)

56.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029240)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g16100 pycom11g20020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	155
AciI	CCGC	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	65
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	3 cut(s)	27, 53, 186
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Alw21I	GWGCWC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	65
AspS9I	GGNCC	2 cut(s)	233, 265
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	179, 308
BcnI	CCSGG	1 cut(s)	48
BfaI	CTAG	1 cut(s)	209
BisI	GCNGC	2 cut(s)	5, 95
BlsI	GCNGC	2 cut(s)	6, 96
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	233, 265
BmiI	GGNNCC	2 cut(s)	266, 267
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 53, 186
Bse21I	CCTNAGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	27, 53, 186
BseMII	CTCAG	2 cut(s)	17, 160
BseRI	GAGGAG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	47, 106
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	3 cut(s)	27, 53, 186
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	327
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	2 cut(s)	18, 159
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	2 cut(s)	266, 267
BspQI	GCTCTTC	1 cut(s)	119
BssMI	GATC	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	2 cut(s)	119, 247
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	2 cut(s)	26, 146
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	233, 265
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	32, 311
CviJI	RGCY	4 cut(s)	7, 24, 97, 235
CviKI_1	RGCY	4 cut(s)	7, 24, 97, 235
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	26, 146
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
Eam1104I	CTCTTC	2 cut(s)	119, 247
EarI	CTCTTC	2 cut(s)	119, 247
Eco47I	GGWCC	1 cut(s)	265
Eco81I	CCTNAGG	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	65
FaeI	CATG	2 cut(s)	35, 314
FaiI	YATR	4 cut(s)	14, 33, 280, 312
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	2 cut(s)	31, 310
Fnu4HI	GCNGC	2 cut(s)	5, 95
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	5, 95
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	2 cut(s)	5, 95
GsaI	CCCAGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	2 cut(s)	47, 106
Hin1II	CATG	2 cut(s)	35, 314
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	2 cut(s)	47, 106
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	26, 146
Hsp92II	CATG	2 cut(s)	35, 314
KflI	GGGWCCC	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	327
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	6 cut(s)	34, 38, 60, 119, 133, 282
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	6 cut(s)	106, 124, 134, 261, 264, 305
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	2 cut(s)	65, 314
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	3 cut(s)	21, 54, 214
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	74
MspI	CCGG	2 cut(s)	47, 106
MspR9I	CCNGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	155
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	2 cut(s)	35, 314
NlaIV	GGNNCC	2 cut(s)	266, 267
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	6, 96
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	266, 267
PspPI	GGNCC	2 cut(s)	233, 265
PspPPI	RGGWCCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	2 cut(s)	5, 95
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	2 cut(s)	233, 265
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	4 cut(s)	9, 78, 152, 214
SfaNI	GCATC	1 cut(s)	99
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	2 cut(s)	65, 314
SsiI	CCGC	1 cut(s)	94
SspI	AATATT	2 cut(s)	243, 288
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	40
TasI	AATT	2 cut(s)	65, 314
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	58, 327
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	35
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.