pycom03g16790

Targeting protein for Xklp2 (TPX2)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
17974877 .. 17975200
324 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 216 bp
ATGGGGAAGAGGAAGTGGCATAAGAGATTGGGAAGAAGGCGACCAAGTGGGCATTGCCCGGATTGCAGCCTCTTCTTAAGGCACCGGAAACACAGGTGTCGTTTTCTTCGCCCGTCAAACTTGTTCTTAACGTCGGAGAATCTCGATCTGGATCAAAGAACTTCAGTCTCTTCTTCTTGGGATGGAAGTCTGTGTCTCAAGCGGGACTTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

8.51

Weight (kDa)

10.81

Isoelectric Point (pI)

74.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028477)

Species Orthologous Gene IDs
malus_domestica MD03G1218600.v1.1
pyrus_communis pycom03g16790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AciI CCGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 147
AflII CTTAAG 1 cut(s) 76
Alw26I GTCTC 2 cut(s) 172, 200
AlwI GGATC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 210
BanI GGYRCC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 78
BccI CCATC 1 cut(s) 176
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 172, 200
BfrI CTTAAG 1 cut(s) 76
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 59
Bpu14I TTCGAA 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 52
Bse8I GATNNNNATC 1 cut(s) 150
BseGI GGATG 1 cut(s) 187
BseJI GATNNNNATC 1 cut(s) 150
BseMI GCAATG 1 cut(s) 52
BseXI GCAGC 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 81
BsiSI CCGG 2 cut(s) 59, 85
BsmAI GTCTC 2 cut(s) 172, 200
Bsp119I TTCGAA 1 cut(s) 210
Bsp143I GATC 2 cut(s) 145, 151
BspACI CCGC 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 1 cut(s) 159
BspT104I TTCGAA 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 81
BspTI CTTAAG 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 52
BssMI GATC 2 cut(s) 145, 151
Bst6I CTCTTC 3 cut(s) 2, 77, 175
BstAFI CTTAAG 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 210
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 2 cut(s) 148, 154
BstMAI GTCTC 2 cut(s) 172, 200
BstMBI GATC 2 cut(s) 145, 151
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 187
CviJI RGCY 1 cut(s) 69
CviKI_1 RGCY 1 cut(s) 69
DpnI GATC 2 cut(s) 147, 153
DpnII GATC 2 cut(s) 145, 151
Eam1104I CTCTTC 3 cut(s) 2, 77, 175
EarI CTCTTC 3 cut(s) 2, 77, 175
Eco57I CTGAAG 1 cut(s) 147
FaiI YATR 1 cut(s) 21
FalI AAGNNNNNCTT 1 cut(s) 191
FauI CCCGC 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 67
HapII CCGG 2 cut(s) 59, 85
HinfI GANTC 1 cut(s) 139
HpaII CCGG 2 cut(s) 59, 85
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 143, 149
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 131
Kzo9I GATC 2 cut(s) 145, 151
LpnPI CCDG 4 cut(s) 72, 79, 98, 134
Lsp1109I GCAGC 1 cut(s) 78
MaeII ACGT 1 cut(s) 131
MalI GATC 2 cut(s) 147, 153
MboI GATC 2 cut(s) 145, 151
MboII GAAGA 6 cut(s) 19, 45, 64, 98, 162, 165
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 2 cut(s) 3, 80
MseI TTAA 2 cut(s) 77, 128
MspCI CTTAAG 1 cut(s) 76
MspI CCGG 2 cut(s) 59, 85
MspR9I CCNGG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 63
NciI CCSGG 1 cut(s) 59
NdeII GATC 2 cut(s) 145, 151
NlaIV GGNNCC 1 cut(s) 83
NspV TTCGAA 1 cut(s) 210
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 83
SaqAI TTAA 2 cut(s) 77, 128
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 2 cut(s) 145, 151
ScrFI CCNGG 1 cut(s) 59
SetI ASST 2 cut(s) 98, 134
SfuI TTCGAA 1 cut(s) 210
SmlI CTYRAG 2 cut(s) 76, 197
SmoI CTYRAG 2 cut(s) 76, 197
SsiI CCGC 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 57
TaiI ACGT 1 cut(s) 134
TaqI TCGA 2 cut(s) 144, 210
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 2 cut(s) 77, 128
Tru9I TTAA 2 cut(s) 77, 128
TseI GCWGC 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.