pycom03g18300

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0029244
Physical Location & Seq
Reverse (-)
19287794 .. 19288084
291 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGCTAGTGGGCAACAAGGCTGACCTGCGTCACCTTCGTGCTGTGTCTGTTGAGGATGCCAAGGCCTTCGCTGAGAGGGAAAACACCTTTTTTATGGAGACATCAGCACTCGAGTCTATGAACGTTGAAAATGCGTTCACTGAAGTCCTAACACAAATATACCATGTAGTCAGCCGGAAAGCACTAGAGGTAGGAGATGATCCTGCAGCATTGCCCAAGGGACAGACCATAAATGTCGGAAACAAGGATGACGTTTCTGCTGTTAAGAAAGCTGGTTGCTGTTCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

97

Amino Acids

10.37

Weight (kDa)

5.29

Isoelectric Point (pI)

27.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 1 - 54 1.4e-14 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029244)

Species Orthologous Gene IDs
pyrus_communis pycom03g18300
rosa_multiflora Rmu_sc0032500.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 33
AclI AACGTT 1 cut(s) 123
AclWI GGATC 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 162
AgsI TTSAA 1 cut(s) 128
AleI CACNNNNGTG 1 cut(s) 36
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 110
BbvI GCAGC 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 2 cut(s) 5, 185
BfmI CTRYAG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 33
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 110
BmsI GCATC 1 cut(s) 46
BoxI GACNNNNGTC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 60, 216
Bse3DI GCAATG 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 60, 216
BseGI GGATG 2 cut(s) 61, 253
BseMI GCAATG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 175
BslFI GGGAC 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 110
Bsp143I GATC 1 cut(s) 199
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 33
BspPI GGATC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 60, 216
BssMI GATC 1 cut(s) 199
BssT1I CCWWGG 2 cut(s) 60, 216
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 61, 253
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 199
BstPAI GACNNNNGTC 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 61, 253
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 33
CseI GACGC 1 cut(s) 17
CviAII CATG 1 cut(s) 164
CviJI RGCY 4 cut(s) 20, 65, 174, 272
CviKI_1 RGCY 4 cut(s) 20, 65, 174, 272
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 60, 216
Eco147I AGGCCT 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 110
EcoT14I CCWWGG 2 cut(s) 60, 216
ErhI CCWWGG 2 cut(s) 60, 216
FaeI CATG 1 cut(s) 167
FaiI YATR 5 cut(s) 95, 119, 160, 165, 230
FaqI GGGAC 1 cut(s) 234
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 2 cut(s) 68, 260
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 2 cut(s) 5, 185
GluI GCNGC 1 cut(s) 207
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 175
HgaI GACGC 1 cut(s) 17
Hin1II CATG 1 cut(s) 167
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 175
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 2 cut(s) 44, 76
HpyCH4IV ACGT 2 cut(s) 123, 252
HpyCH4V TGCA 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 2 cut(s) 123, 252
Hsp92II CATG 1 cut(s) 167
Kzo9I GATC 1 cut(s) 199
LpnPI CCDG 4 cut(s) 38, 188, 216, 258
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 46
MaeI CTAG 2 cut(s) 5, 185
MaeII ACGT 2 cut(s) 123, 252
MaeIII GTNAC 1 cut(s) 29
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 3 cut(s) 46, 69, 181
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 36
MspI CCGG 1 cut(s) 175
NdeII GATC 1 cut(s) 199
NlaIII CATG 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 29
OliI CACNNNNGTG 1 cut(s) 36
PaeR7I CTCGAG 1 cut(s) 110
PceI AGGCCT 1 cut(s) 65
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PshAI GACNNNNGTC 1 cut(s) 27
Psp1406I AACGTT 1 cut(s) 123
PspXI VCTCGAGB 1 cut(s) 110
PstI CTGCAG 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 199
SchI GAGTC 1 cut(s) 122
SetI ASST 7 cut(s) 27, 36, 89, 126, 192, 255, 274
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SseBI AGGCCT 1 cut(s) 65
SspMI CTAG 2 cut(s) 5, 185
StuI AGGCCT 1 cut(s) 65
StyI CCWWGG 2 cut(s) 60, 216
TaiI ACGT 2 cut(s) 126, 255
TaqI TCGA 1 cut(s) 111
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 1 cut(s) 145
XhoI CTCGAG 1 cut(s) 110
XspI CTAG 2 cut(s) 5, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.