Rmu_sc0032500.1_g000001

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032500.1
OG0029244
Physical Location & Seq
Reverse (-)
1342 .. 1632
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032500.1_g000001.1.cds

Sequence Viewer

Length: 291 bp
atgcttgtgggtaacaaggccgacctgcgtcacctgcgtgctgtttctgttgaggatgctaaagcctttgctgagagagaaaacaccttctttatggagacgtcagcactcgagtctatgaatgttgaaaatgcattcactgaagtcttaacccaaatacataatgttgtgagccggaaagcacttgaggttggagatgatcctgcagccgtgcctaagggacaaaccataaatgttggaggcaaggatgatgtttcagccattaagaaagatgggtgttgttctgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

96

Amino Acids

10.31

Weight (kDa)

5.06

Isoelectric Point (pI)

28.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029244)

Species Orthologous Gene IDs
pyrus_communis pycom03g18300
rosa_multiflora Rmu_sc0032500.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 42
AatII GACGTC 1 cut(s) 104
Acc36I ACCTGC 2 cut(s) 33, 42
AclWI GGATC 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 101
AgsI TTSAA 1 cut(s) 128
AleI CACNNNNGTG 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 110
AxyI CCTNAGG 1 cut(s) 216
BbvI GCAGC 1 cut(s) 218
BccI CCATC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 204
BfuAI ACCTGC 2 cut(s) 33, 42
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 110
BmsI GCATC 1 cut(s) 46
BoxI GACNNNNGTC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 101
Bse21I CCTNAGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 61, 253
BseMII CTCAG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 175
BslFI GGGAC 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 234
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 110
Bsp143I GATC 1 cut(s) 199
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 208
BspMI ACCTGC 2 cut(s) 33, 42
BspPI GGATC 1 cut(s) 194
BssMI GATC 1 cut(s) 199
BssNI GRCGYC 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 72, 216
BstF5I GGATG 2 cut(s) 61, 253
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstPAI GACNNNNGTC 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 218
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 2 cut(s) 61, 253
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 2 cut(s) 33, 42
Cac8I GCNNGC 1 cut(s) 39
CseI GACGC 1 cut(s) 17
CviJI RGCY 5 cut(s) 20, 65, 174, 209, 260
CviKI_1 RGCY 5 cut(s) 20, 65, 174, 209, 260
DdeI CTNAG 2 cut(s) 72, 216
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 162
Eco81I CCTNAGG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 110
EcoT22I ATGCAT 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 92
FaiI YATR 4 cut(s) 95, 119, 162, 230
FaqI GGGAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 2 cut(s) 68, 260
Fsp4HI GCNGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 207
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 175
HgaI GACGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 101
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 175
HphI GGTGA 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 2 cut(s) 134, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 2 cut(s) 72, 216
HpySE526I ACGT 1 cut(s) 101
Hsp92I GRCGYC 1 cut(s) 101
Kzo9I GATC 1 cut(s) 199
LpnPI CCDG 4 cut(s) 38, 47, 188, 216
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 46
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 11, 29
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 2 cut(s) 172, 217
MnlI CCTC 3 cut(s) 46, 181, 233
Mph1103I ATGCAT 1 cut(s) 136
MseI TTAA 2 cut(s) 149, 264
MslI CAYNNNNRTG 1 cut(s) 36
MspI CCGG 1 cut(s) 175
Mva1269I GAATGC 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 29
NsiI ATGCAT 1 cut(s) 136
OliI CACNNNNGTG 1 cut(s) 36
PaeR7I CTCGAG 1 cut(s) 110
PaqCI CACCTGC 1 cut(s) 42
PctI GAATGC 1 cut(s) 134
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PshAI GACNNNNGTC 1 cut(s) 27
PspXI VCTCGAGB 1 cut(s) 110
PstI CTGCAG 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 2 cut(s) 149, 264
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 199
SchI GAGTC 1 cut(s) 122
SetI ASST 5 cut(s) 27, 36, 89, 104, 192
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 110, 185
SmoI CTYRAG 2 cut(s) 110, 185
TaiI ACGT 1 cut(s) 104
TaqI TCGA 1 cut(s) 111
Tru1I TTAA 2 cut(s) 149, 264
Tru9I TTAA 2 cut(s) 149, 264
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 1 cut(s) 145
XhoI CTCGAG 1 cut(s) 110
ZraI GACGTC 1 cut(s) 102
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.