pycom03g19170

Alpha-1,3 1,6-mannosyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
19870171 .. 19870653
483 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g19170.3

Sequence Viewer

Length: 396 bp
ATGCACTTCTCTCCCAATGCCTATGCTTCCTTTATACGCCAAAGGCGAAAATTACATAATTTTGTTCTTTCAAAATGTAGGATGAACACTTTGGCATTGTACGATCTGGAGGCAATGGCTTCTCATAAACCTGGCATTGCGTACAACAGTGGGGGCCCTGTAGAGACCGTTAAGAATGGTAAAACGAAATTTCTATGTAACTGTAACCCAAGAGAGTTCTCCTTGGTTATGGTTAAACTCATAGTTCATAACGCACCCGCAGATGGCGTCATAGTTCATGACCAAGAGAGTTATGGTCTTGGTCATGCAACTTTAATAATAAACAGTATTTTTCTTAACAAACGACAATCAATGATGTGTTCAAATTCCTTTTTAGCAATATATAATATTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

132

Amino Acids

14.74

Weight (kDa)

9.48

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029245)

Species Orthologous Gene IDs
pyrus_communis pycom03g19170 pycom03g19210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 258
AcsI RAATTY 2 cut(s) 188, 364
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 2 cut(s) 101, 143
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 72, 363
AjnI CCWGG 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 158
AoxI GGCC 1 cut(s) 154
ApaI GGGCCC 1 cut(s) 158
ApoI RAATTY 2 cut(s) 188, 364
AspS9I GGNCC 2 cut(s) 154, 155
BaeGI GKGCMC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 158
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 132
BmgT120I GGNCC 2 cut(s) 154, 155
BmiI GGNNCC 2 cut(s) 155, 156
BmrFI CCNGG 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse3DI GCAATG 2 cut(s) 120, 135
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMI GCAATG 2 cut(s) 120, 135
BseSI GKGCMC 1 cut(s) 158
BshFI GGCC 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 158
BsnI GGCC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 158
Bsp120I GGGCCC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 1 cut(s) 258
BspANI GGCC 1 cut(s) 156
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 155, 156
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 120, 135
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 4 cut(s) 149, 169, 203, 326
BstACI GRCGYC 1 cut(s) 267
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 159
BstSLI GKGCMC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 154
CciI TCATGA 1 cut(s) 277
Cfr13I GGNCC 2 cut(s) 154, 155
CseI GACGC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 100, 142
CviAII CATG 2 cut(s) 278, 305
CviJI RGCY 2 cut(s) 119, 156
CviKI_1 RGCY 2 cut(s) 119, 156
CviQI GTAC 2 cut(s) 100, 142
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 158
EcoO109I RGGNCCY 2 cut(s) 154, 155
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 281, 308
FatI CATG 2 cut(s) 277, 304
FauI CCCGC 1 cut(s) 265
FokI GGATG 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 156
HgaI GACGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 2 cut(s) 281, 308
Hpy188III TCNNGA 2 cut(s) 107, 278
HpyCH4III ACNGT 4 cut(s) 149, 169, 203, 326
HpyCH4V TGCA 2 cut(s) 4, 308
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 2 cut(s) 281, 308
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 4 cut(s) 92, 117, 144, 171
MaeIII GTNAC 2 cut(s) 197, 203
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 4 cut(s) 50, 58, 188, 364
MnlI CCTC 1 cut(s) 103
MseI TTAA 4 cut(s) 171, 234, 314, 336
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 281, 308
NlaIV GGNNCC 2 cut(s) 155, 156
PagI TCATGA 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 155, 156
PspOMI GGGCCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 154, 155
RsaI GTAC 2 cut(s) 101, 143
RsaNI GTAC 2 cut(s) 100, 142
SaqAI TTAA 4 cut(s) 171, 234, 314, 336
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 154, 155
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 158
SetI ASST 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 159
Sse9I AATT 4 cut(s) 50, 58, 188, 364
SsiI CCGC 1 cut(s) 258
SspI AATATT 1 cut(s) 388
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 4 cut(s) 149, 169, 203, 326
TasI AATT 4 cut(s) 50, 58, 188, 364
Tru1I TTAA 4 cut(s) 171, 234, 314, 336
Tru9I TTAA 4 cut(s) 171, 234, 314, 336
TscAI CASTG 1 cut(s) 154
TspDTI ATGAA 3 cut(s) 98, 236, 266
TspRI CASTG 1 cut(s) 154
XapI RAATTY 2 cut(s) 188, 364
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.